Rroxscaffold_4G00287600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0031026
Physical Location & Seq
Forward (+)
8600181 .. 8604519
4339 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00287600.1

Sequence Viewer

Length: 384 bp
ATGAGACCCGGGTCCGACACGGCAAAGGAGAACCACGAGAGCCTCTCTCAGCCTTGCACGTCGCCCAAGAAAGTAGCCAAGCAGTCAAGGAAACAGTCGAAAGCGACAAAGAAGACATCGAAGAGAACTGCAAGACCCGACCTCTCAAACACACTTGATCGGATCGCCGCCCCCAACAAGCACGATCCGCCGCAACACACCCTCAACCGCCATAGCCCCCGAGCTGCCTCGATTGGAGCCTTATTGCCTCAAAACATTTCCGTTGAGCACTTTACCCGAACAACGATGCCGCCGAACAAGAAGTCTGCCTGTCCCCTTGTCGTTGCCGTCCTTGCTACCGGTATGAGACTTCTAGGTCGCCGCTACCGCTACACGAAACCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.06

Weight (kDa)

11.06

Isoelectric Point (pI)

59.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031026)

Species Orthologous Gene IDs
rosa_multiflora Rmu_ssc0000484.1_g000020
rosa_roxburghii Rroxscaffold_4G00287600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 354
AciI CCGC 7 cut(s) 168, 188, 191, 208, 290, 361, 367
AclWI GGATC 2 cut(s) 170, 179
AgeI ACCGGT 1 cut(s) 338
AjiI CACGTC 1 cut(s) 60
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw21I GWGCWC 1 cut(s) 270
Alw26I GTCTC 1 cut(s) 340
AlwI GGATC 2 cut(s) 170, 179
Ama87I CYCGRG 2 cut(s) 8, 219
ApeKI GCWGC 1 cut(s) 224
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
AsiGI ACCGGT 1 cut(s) 338
AspS9I GGNCC 1 cut(s) 12
AsuC2I CCSGG 2 cut(s) 9, 10
AvaI CYCGRG 2 cut(s) 8, 219
AvaII GGWCC 1 cut(s) 12
BauI CACGAG 1 cut(s) 35
BbsI GAAGAC 1 cut(s) 119
Bbv12I GWGCWC 1 cut(s) 270
BbvI GCAGC 1 cut(s) 211
BceAI ACGGC 2 cut(s) 36, 311
BcnI CCSGG 2 cut(s) 9, 10
BcoDI GTCTC 1 cut(s) 340
BfaI CTAG 1 cut(s) 353
BisI GCNGC 5 cut(s) 168, 191, 225, 290, 361
BlsI GCNGC 5 cut(s) 169, 192, 226, 291, 362
Bme1390I CCNGG 2 cut(s) 9, 10
Bme18I GGWCC 1 cut(s) 12
BmeT110I CYCGRG 2 cut(s) 8, 219
BmgBI CACGTC 1 cut(s) 60
BmgT120I GGNCC 1 cut(s) 12
BmiI GGNNCC 2 cut(s) 13, 238
BmrFI CCNGG 2 cut(s) 9, 10
BmsI GCATC 1 cut(s) 276
BoxI GACNNNNGTC 1 cut(s) 10
BpiI GAAGAC 1 cut(s) 119
BplI GAGNNNNNCTC 4 cut(s) 29, 61, 31, 63
BpuMI CCSGG 2 cut(s) 9, 10
BsaJI CCNNGG 1 cut(s) 8
BsaWI WCCGGW 1 cut(s) 338
Bse118I RCCGGY 1 cut(s) 338
BseDI CCNNGG 1 cut(s) 8
BseMII CTCAG 1 cut(s) 62
BseXI GCAGC 1 cut(s) 211
BshTI ACCGGT 1 cut(s) 338
BsiHKAI GWGCWC 1 cut(s) 270
BsiHKCI CYCGRG 2 cut(s) 8, 219
BsiSI CCGG 2 cut(s) 9, 339
BslFI GGGAC 1 cut(s) 297
BsmAI GTCTC 1 cut(s) 340
BsmFI GGGAC 1 cut(s) 297
BsoBI CYCGRG 2 cut(s) 8, 219
Bsp1286I GDGCHC 1 cut(s) 270
Bsp143I GATC 3 cut(s) 157, 162, 184
BspACI CCGC 7 cut(s) 168, 188, 191, 208, 290, 361, 367
BspCNI CTCAG 1 cut(s) 61
BspLI GGNNCC 2 cut(s) 13, 238
BspPI GGATC 2 cut(s) 170, 179
BsrFI RCCGGY 1 cut(s) 338
BssAI RCCGGY 1 cut(s) 338
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 3 cut(s) 157, 162, 184
BssSI CACGAG 1 cut(s) 35
Bst2BI CACGAG 1 cut(s) 35
Bst4CI ACNGT 1 cut(s) 96
Bst6I CTCTTC 1 cut(s) 116
BstDEI CTNAG 1 cut(s) 48
BstKTI GATC 3 cut(s) 160, 165, 187
BstMAI GTCTC 1 cut(s) 340
BstMBI GATC 3 cut(s) 157, 162, 184
BstMWI GCNNNNNNNGC 3 cut(s) 187, 332, 366
BstPAI GACNNNNGTC 1 cut(s) 10
BstSCI CCNGG 2 cut(s) 7, 8
BstV1I GCAGC 1 cut(s) 211
BstV2I GAAGAC 1 cut(s) 119
BtrI CACGTC 1 cut(s) 60
Cfr10I RCCGGY 1 cut(s) 338
Cfr13I GGNCC 1 cut(s) 12
Cfr9I CCCGGG 1 cut(s) 8
CspAI ACCGGT 1 cut(s) 338
CviJI RGCY 6 cut(s) 42, 52, 77, 216, 224, 239
CviKI_1 RGCY 6 cut(s) 42, 52, 77, 216, 224, 239
DdeI CTNAG 1 cut(s) 48
DpnI GATC 3 cut(s) 159, 164, 186
DpnII GATC 3 cut(s) 157, 162, 184
DrdI GACNNNNNNGTC 1 cut(s) 354
DseDI GACNNNNNNGTC 1 cut(s) 354
Eam1104I CTCTTC 1 cut(s) 116
EarI CTCTTC 1 cut(s) 116
EciI GGCGGA 1 cut(s) 177
Eco47I GGWCC 1 cut(s) 12
Eco88I CYCGRG 2 cut(s) 8, 219
FaiI YATR 2 cut(s) 213, 344
FaqI GGGAC 1 cut(s) 297
Fnu4HI GCNGC 5 cut(s) 168, 191, 225, 290, 361
Fsp4HI GCNGC 5 cut(s) 168, 191, 225, 290, 361
FspBI CTAG 1 cut(s) 353
GluI GCNGC 5 cut(s) 168, 191, 225, 290, 361
HapII CCGG 2 cut(s) 9, 339
HpaII CCGG 2 cut(s) 9, 339
Hpy188I TCNGA 2 cut(s) 16, 162
Hpy99I CGWCG 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 96
HpyCH4IV ACGT 1 cut(s) 59
HpyCH4V TGCA 2 cut(s) 57, 131
HpyF10VI GCNNNNNNNGC 3 cut(s) 187, 332, 366
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 59
Kzo9I GATC 3 cut(s) 157, 162, 184
LmnI GCTCC 1 cut(s) 236
LpnPI CCDG 3 cut(s) 22, 322, 352
Lsp1109I GCAGC 1 cut(s) 211
LweI GCATC 1 cut(s) 276
MaeI CTAG 1 cut(s) 353
MaeII ACGT 1 cut(s) 59
MalI GATC 3 cut(s) 159, 164, 186
MboI GATC 3 cut(s) 157, 162, 184
MboII GAAGA 2 cut(s) 124, 133
MhlI GDGCHC 1 cut(s) 270
MmeI TCCRAC 1 cut(s) 39
MnlI CCTC 5 cut(s) 53, 152, 212, 238, 258
MspI CCGG 2 cut(s) 9, 339
MspR9I CCNGG 2 cut(s) 9, 10
MwoI GCNNNNNNNGC 3 cut(s) 187, 332, 366
NciI CCSGG 2 cut(s) 9, 10
NdeII GATC 3 cut(s) 157, 162, 184
NlaIV GGNNCC 2 cut(s) 13, 238
PcsI WCGNNNNNNNCGW 1 cut(s) 290
PinAI ACCGGT 1 cut(s) 338
PkrI GCNGC 5 cut(s) 169, 192, 226, 291, 362
PshAI GACNNNNGTC 1 cut(s) 10
PspN4I GGNNCC 2 cut(s) 13, 238
PspPI GGNCC 1 cut(s) 12
SatI GCNGC 5 cut(s) 168, 191, 225, 290, 361
Sau3AI GATC 3 cut(s) 157, 162, 184
Sau96I GGNCC 1 cut(s) 12
ScrFI CCNGG 2 cut(s) 9, 10
SduI GDGCHC 1 cut(s) 270
SetI ASST 4 cut(s) 62, 144, 226, 358
SfaNI GCATC 1 cut(s) 276
SinI GGWCC 1 cut(s) 12
SmaI CCCGGG 1 cut(s) 10
SsiI CCGC 7 cut(s) 168, 188, 191, 208, 290, 361, 367
SspMI CTAG 1 cut(s) 353
StyD4I CCNGG 2 cut(s) 7, 8
TaaI ACNGT 1 cut(s) 96
TaiI ACGT 1 cut(s) 62
TaqI TCGA 3 cut(s) 98, 119, 230
TauI GCSGC 4 cut(s) 170, 193, 292, 363
TseI GCWGC 1 cut(s) 224
TspGWI ACGGA 1 cut(s) 250
TspMI CCCGGG 1 cut(s) 8
VpaK11BI GGWCC 1 cut(s) 12
XmaI CCCGGG 1 cut(s) 8
XspI CTAG 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.