Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000166

Orthogroup ID

OG0031833

Physical Location & Seq

Genomic Coordinates Reverse (-)

111254 .. 112197

Gene Structure 944 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_166G00440790.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 195 bp

ATGGCTACTGGTGCCAAGTCTCTGAAGGGTACATCTTACTGGATGGCTCCTGATGTCGTTCTCCAGACTGATCATGGCATAACTGAGATTGGTTCTTCAGCTCTGCTGATATATGGAGTGTTGGATGTACTGCATGTGATTGAGATGGCCACGGGAAAGCCTCCTTGGAGGGGGAAACATTCAGAGAAGGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0097435 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

64

Amino Acids

6.85

Weight (kDa)

6.82

Isoelectric Point (pI)

27.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031833)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_166G00440790 Rroxscaffold_4G00302850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	11
AcoI	YGGCCR	1 cut(s)	147
AcuI	CTGAAG	2 cut(s)	44, 81
AfaI	GTAC	2 cut(s)	31, 129
AfiI	CCNNNNNNNGG	1 cut(s)	170
AjuI	GAANNNNNNNTTGG	2 cut(s)	148, 180
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	24
AoxI	GGCC	1 cut(s)	147
BalI	TGGCCA	1 cut(s)	149
BanI	GGYRCC	1 cut(s)	11
BccI	CCATC	2 cut(s)	37, 139
BclI	TGATCA	1 cut(s)	70
BcoDI	GTCTC	1 cut(s)	24
BmiI	GGNNCC	2 cut(s)	13, 48
BpmI	CTGGAG	1 cut(s)	47
BsaJI	CCNNGG	2 cut(s)	150, 164
Bsc4I	CCNNNNNNNGG	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	13, 44
BseDI	CCNNGG	2 cut(s)	150, 164
BseGI	GGATG	2 cut(s)	48, 130
BseLI	CCNNNNNNNGG	1 cut(s)	170
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	13, 44
BshFI	GGCC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	11
BslI	CCNNNNNNNGG	1 cut(s)	170
BsmAI	GTCTC	1 cut(s)	24
BsnI	GGCC	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	70
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	2 cut(s)	13, 48
BspT107I	GGYRCC	1 cut(s)	11
BsrI	ACTGG	2 cut(s)	13, 44
BssECI	CCNNGG	2 cut(s)	150, 164
BssMI	GATC	1 cut(s)	70
BssT1I	CCWWGG	1 cut(s)	164
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	48, 130
BstKTI	GATC	1 cut(s)	73
BstMAI	GTCTC	1 cut(s)	24
BstMBI	GATC	1 cut(s)	70
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	48, 130
Csp6I	GTAC	2 cut(s)	30, 128
CviAII	CATG	2 cut(s)	74, 134
CviJI	RGCY	5 cut(s)	5, 47, 101, 149, 160
CviKI_1	RGCY	5 cut(s)	5, 47, 101, 149, 160
CviQI	GTAC	2 cut(s)	30, 128
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	1 cut(s)	72
DpnII	GATC	1 cut(s)	70
EaeI	YGGCCR	1 cut(s)	147
Eco130I	CCWWGG	1 cut(s)	164
Eco57I	CTGAAG	2 cut(s)	44, 81
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	2 cut(s)	77, 137
FaiI	YATR	5 cut(s)	75, 80, 112, 114, 135
FatI	CATG	2 cut(s)	73, 133
FbaI	TGATCA	1 cut(s)	70
FokI	GGATG	2 cut(s)	55, 137
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	149
Hin1II	CATG	2 cut(s)	77, 137
Hpy188I	TCNGA	2 cut(s)	24, 184
Hpy188III	TCNNGA	2 cut(s)	50, 64
HpyAV	CCTTC	2 cut(s)	19, 181
HpyCH4V	TGCA	1 cut(s)	133
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	84
Hsp92II	CATG	2 cut(s)	77, 137
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	1 cut(s)	70
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	3 cut(s)	25, 63, 77
MalI	GATC	1 cut(s)	72
MboI	GATC	1 cut(s)	70
MboII	GAAGA	1 cut(s)	87
MlsI	TGGCCA	1 cut(s)	149
MluNI	TGGCCA	1 cut(s)	149
MmeI	TCCRAC	1 cut(s)	102
MnlI	CCTC	2 cut(s)	162, 171
Mox20I	TGGCCA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	149
Msp20I	TGGCCA	1 cut(s)	149
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	70
NlaIII	CATG	2 cut(s)	77, 137
NlaIV	GGNNCC	2 cut(s)	13, 48
NspI	RCATGY	1 cut(s)	137
PspN4I	GGNNCC	2 cut(s)	13, 48
RsaI	GTAC	2 cut(s)	31, 129
RsaNI	GTAC	2 cut(s)	30, 128
Sau3AI	GATC	1 cut(s)	70
SetI	ASST	1 cut(s)	103
StyI	CCWWGG	1 cut(s)	164
TatI	WGTACW	1 cut(s)	127
XceI	RCATGY	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.