Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0031833

Physical Location & Seq

Genomic Coordinates Forward (+)

23190535 .. 23194373

Gene Structure 3839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00302850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCTACTGGTGCCAAGTCTCTGAAGGGTACATCTTACTGGATGGCTCCTGATGTCGTTCTCCAGACTGATCATGGCATAACTGAGATTGGTTCTTCAGCTCTGCTGATATATGGAGTGTTGGATGTACTGCATGTGATTGAGATGGCCACGGGAAAGCCTCCTTGGAGGGAAACATTCAGAGAAGGGCTGGACTTTGAGACACGTGTACAGAAGAGTCTGGATCCACCGATCCCGGAGCATCTATACTCCGATGGGAAAGATTTTTTGCTACGCTGCCTGCAAAAGTGCAAAGGTATTTTAATCTTGTTGTCCTTCAATCGTTTGAACTTAAATTGGAATCTTCTAATATACGTTGGATTGATCTTATCCGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000165 GO:0000186 GO:0000226 GO:0001932 GO:0001934 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006979 GO:0006996 GO:0007010 GO:0007017 GO:0007154 GO:0007165 GO:0007346 GO:0008150 GO:0008152 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0016043 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0030865 GO:0031098 GO:0031122 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0043622 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048046 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071840 GO:0071900 GO:0071902 GO:0080090 GO:0097435 GO:0140096 GO:1901564 GO:1902531 GO:1902533

KEGG Pathways

Metabolic & Signaling

ko04016 map04016

Pfam Domains

Protein Families

Pkinase

Protein Analysis

125

Amino Acids

14.03

Weight (kDa)

6.26

Isoelectric Point (pI)

29.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031833)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_166G00440790 Rroxscaffold_4G00302850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	11
AclWI	GGATC	3 cut(s)	218, 226, 231
AcoI	YGGCCR	1 cut(s)	147
AcuI	CTGAAG	2 cut(s)	44, 81
AcvI	CACGTG	1 cut(s)	206
AfaI	GTAC	3 cut(s)	31, 129, 210
AflIII	ACRYGT	2 cut(s)	203, 205
AgsI	TTSAA	2 cut(s)	319, 328
AjuI	GAANNNNNNNTTGG	2 cut(s)	148, 180
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw26I	GTCTC	2 cut(s)	24, 194
AlwI	GGATC	3 cut(s)	218, 226, 231
AoxI	GGCC	1 cut(s)	147
ApeKI	GCWGC	1 cut(s)	276
AsuC2I	CCSGG	1 cut(s)	236
BalI	TGGCCA	1 cut(s)	149
BamHI	GGATCC	1 cut(s)	223
BanI	GGYRCC	1 cut(s)	11
BbrPI	CACGTG	1 cut(s)	206
BbvI	GCAGC	1 cut(s)	263
BccI	CCATC	3 cut(s)	37, 139, 248
BclI	TGATCA	1 cut(s)	70
BcnI	CCSGG	1 cut(s)	236
BcoDI	GTCTC	2 cut(s)	24, 194
BisI	GCNGC	1 cut(s)	277
BlsI	GCNGC	1 cut(s)	278
Bme1390I	CCNGG	1 cut(s)	236
BmiI	GGNNCC	3 cut(s)	13, 48, 225
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	1 cut(s)	250
BpmI	CTGGAG	1 cut(s)	47
BpuMI	CCSGG	1 cut(s)	236
BsaAI	YACGTR	1 cut(s)	206
BsaJI	CCNNGG	2 cut(s)	150, 164
Bse1I	ACTGG	2 cut(s)	13, 44
BseDI	CCNNGG	2 cut(s)	150, 164
BseGI	GGATG	2 cut(s)	48, 130
BseMII	CTCAG	1 cut(s)	75
BseNI	ACTGG	2 cut(s)	13, 44
BseXI	GCAGC	1 cut(s)	263
BshFI	GGCC	1 cut(s)	149
BshNI	GGYRCC	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	236
BsmAI	GTCTC	2 cut(s)	24, 194
BsnI	GGCC	1 cut(s)	149
Bsp1407I	TGTACA	1 cut(s)	208
Bsp143I	GATC	4 cut(s)	70, 223, 231, 363
BspANI	GGCC	1 cut(s)	149
BspCNI	CTCAG	1 cut(s)	76
BspLI	GGNNCC	3 cut(s)	13, 48, 225
BspPI	GGATC	3 cut(s)	218, 226, 231
BspT107I	GGYRCC	1 cut(s)	11
BsrGI	TGTACA	1 cut(s)	208
BsrI	ACTGG	2 cut(s)	13, 44
BssECI	CCNNGG	2 cut(s)	150, 164
BssMI	GATC	4 cut(s)	70, 223, 231, 363
BssT1I	CCWWGG	1 cut(s)	164
Bst6I	CTCTTC	1 cut(s)	209
BstAUI	TGTACA	1 cut(s)	208
BstBAI	YACGTR	1 cut(s)	206
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	1 cut(s)	84
BstDSI	CCRYGG	1 cut(s)	150
BstF5I	GGATG	2 cut(s)	48, 130
BstKTI	GATC	4 cut(s)	73, 226, 234, 366
BstMAI	GTCTC	2 cut(s)	24, 194
BstMBI	GATC	4 cut(s)	70, 223, 231, 363
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	137
BstSCI	CCNGG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	263
BstX2I	RGATCY	1 cut(s)	223
BstYI	RGATCY	1 cut(s)	223
BsuRI	GGCC	1 cut(s)	149
BtgI	CCRYGG	1 cut(s)	150
BtsCI	GGATG	2 cut(s)	48, 130
Cac8I	GCNNGC	1 cut(s)	281
Csp6I	GTAC	3 cut(s)	30, 128, 209
CviAII	CATG	2 cut(s)	74, 134
CviJI	RGCY	6 cut(s)	5, 47, 101, 149, 160, 190
CviKI_1	RGCY	6 cut(s)	5, 47, 101, 149, 160, 190
CviQI	GTAC	3 cut(s)	30, 128, 209
DdeI	CTNAG	1 cut(s)	84
DpnI	GATC	4 cut(s)	72, 225, 233, 365
DpnII	GATC	4 cut(s)	70, 223, 231, 363
EaeI	YGGCCR	1 cut(s)	147
Eam1104I	CTCTTC	1 cut(s)	209
EarI	CTCTTC	1 cut(s)	209
Eco130I	CCWWGG	1 cut(s)	164
Eco57I	CTGAAG	2 cut(s)	44, 81
Eco72I	CACGTG	1 cut(s)	206
EcoT14I	CCWWGG	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	164
FaeI	CATG	2 cut(s)	77, 137
FaiI	YATR	7 cut(s)	75, 80, 112, 114, 135, 247, 352
FatI	CATG	2 cut(s)	73, 133
FbaI	TGATCA	1 cut(s)	70
Fnu4HI	GCNGC	1 cut(s)	277
FokI	GGATG	2 cut(s)	55, 137
Fsp4HI	GCNGC	1 cut(s)	277
GluI	GCNGC	1 cut(s)	277
GsuI	CTGGAG	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	149
HapII	CCGG	1 cut(s)	236
Hin1II	CATG	2 cut(s)	77, 137
HinfI	GANTC	2 cut(s)	217, 340
HpaII	CCGG	1 cut(s)	236
Hpy166II	GTNNAC	1 cut(s)	209
Hpy188I	TCNGA	3 cut(s)	24, 182, 253
Hpy188III	TCNNGA	3 cut(s)	50, 64, 221
Hpy8I	GTNNAC	1 cut(s)	209
HpyAV	CCTTC	3 cut(s)	19, 179, 325
HpyCH4IV	ACGT	2 cut(s)	205, 354
HpyCH4V	TGCA	3 cut(s)	133, 283, 291
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
HpyF3I	CTNAG	1 cut(s)	84
HpySE526I	ACGT	2 cut(s)	205, 354
Hsp92II	CATG	2 cut(s)	77, 137
Ksp22I	TGATCA	1 cut(s)	70
Kzo9I	GATC	4 cut(s)	70, 223, 231, 363
LmnI	GCTCC	2 cut(s)	52, 238
LpnPI	CCDG	7 cut(s)	25, 63, 77, 176, 206, 249, 293
Lsp1109I	GCAGC	1 cut(s)	263
LweI	GCATC	1 cut(s)	250
MaeII	ACGT	2 cut(s)	205, 354
MalI	GATC	4 cut(s)	72, 225, 233, 365
MboI	GATC	4 cut(s)	70, 223, 231, 363
MboII	GAAGA	3 cut(s)	87, 226, 335
MflI	RGATCY	1 cut(s)	223
MlsI	TGGCCA	1 cut(s)	149
MluCI	AATT	1 cut(s)	334
MluNI	TGGCCA	1 cut(s)	149
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	2 cut(s)	102, 337
MnlI	CCTC	2 cut(s)	162, 171
Mox20I	TGGCCA	1 cut(s)	149
MscI	TGGCCA	1 cut(s)	149
MseI	TTAA	2 cut(s)	302, 332
Msp20I	TGGCCA	1 cut(s)	149
MspI	CCGG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	236
MwoI	GCNNNNNNNGC	1 cut(s)	11
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	4 cut(s)	70, 223, 231, 363
NlaIII	CATG	2 cut(s)	77, 137
NlaIV	GGNNCC	3 cut(s)	13, 48, 225
NspI	RCATGY	1 cut(s)	137
PfeI	GAWTC	1 cut(s)	340
PfoI	TCCNGGA	1 cut(s)	234
PkrI	GCNGC	1 cut(s)	278
PleI	GAGTC	1 cut(s)	225
PmaCI	CACGTG	1 cut(s)	206
PmlI	CACGTG	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	225
Ppu21I	YACGTR	1 cut(s)	206
PspCI	CACGTG	1 cut(s)	206
PspN4I	GGNNCC	3 cut(s)	13, 48, 225
PsuI	RGATCY	1 cut(s)	223
RsaI	GTAC	3 cut(s)	31, 129, 210
RsaNI	GTAC	3 cut(s)	30, 128, 209
SaqAI	TTAA	2 cut(s)	302, 332
SatI	GCNGC	1 cut(s)	277
Sau3AI	GATC	4 cut(s)	70, 223, 231, 363
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	1 cut(s)	236
SetI	ASST	4 cut(s)	103, 208, 298, 357
SfaNI	GCATC	1 cut(s)	250
Sse9I	AATT	1 cut(s)	334
StyD4I	CCNGG	1 cut(s)	234
StyI	CCWWGG	1 cut(s)	164
TaiI	ACGT	2 cut(s)	208, 357
TasI	AATT	1 cut(s)	334
TatI	WGTACW	2 cut(s)	127, 208
TfiI	GAWTC	1 cut(s)	340
Tru1I	TTAA	2 cut(s)	302, 332
Tru9I	TTAA	2 cut(s)	302, 332
TseI	GCWGC	1 cut(s)	276
TspGWI	ACGGA	1 cut(s)	361
XceI	RCATGY	1 cut(s)	137
XcmI	CCANNNNNNNNNTGG	1 cut(s)	71

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.