Rroxscaffold_1G00030020

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Reverse (-)
39221978 .. 39227101
5124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00030020.1

Sequence Viewer

Length: 558 bp
ATGGGTTTCTCCAAAGACAATCTTAAAGGCCTTCTTCTAGCTCTCCTATCAAGTGGGTTCATAGGGGCAAGCTTCATCATCAAGAAAAAAGGCCTCCGAAGAGCCGCAGCTGCTTCTGGGGTAATGAGTATTAAAGCCCTAGGAACTGCTCTAAAATTAACTTTTGAGGGAAAGAATCAGTTAATCTATCCAGAGACATGGTTTTTTATGTTGGTTGTAACTACATGTGTCATCACTCAGATGAACTATCTGAACAAGTCTGCTTCTTGGACCCTTGCTTGGGACCGGGCAACGTTTAGGAGACAGGAAACTGTAGCCAATAACAATTTAGGTGTCATTAGGGGGTTCAAAAATTTGAATCATAGACATCTTGGGACAAAATTAACCCCAGATATTCACTACTCTGGATCCAAGTTTATGGAAGAAGAGTTCTGCAAGGGTTGCTCCACATTTGGTGGTTTAAAGAACTCAGTTTCTAACACTTATAATCTAAAGCATCTCTCACATTGTCCAAATTTGGTTTCTAGGGCACTAATTGGAGAAAAGATATCCACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

185

Amino Acids

20.48

Weight (kDa)

9.94

Isoelectric Point (pI)

24.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mg_trans_NIPA PF05653 6 - 38 3.4e-06 Magnesium transporter NIPA
Mg_trans_NIPA PF05653 38 - 88 5.1e-15 Magnesium transporter NIPA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0024861)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0163331
rosa_roxburghii Rroxscaffold_1G00030020
rosa_samantha Rh5AG335500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 486
AciI CCGC 1 cut(s) 105
AclI AACGTT 1 cut(s) 293
AclWI GGATC 2 cut(s) 402, 415
AcsI RAATTY 2 cut(s) 352, 514
AfiI CCNNNNNNNGG 2 cut(s) 279, 280
AflIII ACRYGT 1 cut(s) 224
AgsI TTSAA 2 cut(s) 349, 358
AjuI GAANNNNNNNTTGG 2 cut(s) 505, 537
AloI GAACNNNNNNTCC 2 cut(s) 413, 445
AluBI AGCT 3 cut(s) 41, 72, 110
AluI AGCT 3 cut(s) 41, 72, 110
Alw26I GTCTC 2 cut(s) 188, 295
AlwI GGATC 2 cut(s) 402, 415
AoxI GGCC 2 cut(s) 28, 91
ApeKI GCWGC 2 cut(s) 107, 110
ApoI RAATTY 2 cut(s) 352, 514
AspA2I CCTAGG 1 cut(s) 139
AspS9I GGNCC 2 cut(s) 270, 283
AsuC2I CCSGG 1 cut(s) 287
AvaII GGWCC 2 cut(s) 270, 283
AvrII CCTAGG 1 cut(s) 139
BaeGI GKGCMC 1 cut(s) 532
BamHI GGATCC 1 cut(s) 407
BbvI GCAGC 2 cut(s) 97, 119
BcnI CCSGG 1 cut(s) 287
BcoDI GTCTC 2 cut(s) 188, 295
BfaI CTAG 4 cut(s) 38, 140, 525, 556
BfmI CTRYAG 1 cut(s) 312
BisI GCNGC 3 cut(s) 105, 108, 111
BlnI CCTAGG 1 cut(s) 139
BlsI GCNGC 3 cut(s) 106, 109, 112
Bme1390I CCNGG 1 cut(s) 287
Bme18I GGWCC 2 cut(s) 270, 283
BmgT120I GGNCC 2 cut(s) 270, 283
BmiI GGNNCC 3 cut(s) 272, 284, 409
BmrFI CCNGG 1 cut(s) 287
BmsI GCATC 1 cut(s) 505
BpuMI CCSGG 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 139
Bsc4I CCNNNNNNNGG 2 cut(s) 279, 280
BseDI CCNNGG 1 cut(s) 139
BseLI CCNNNNNNNGG 2 cut(s) 279, 280
BseMII CTCAG 2 cut(s) 251, 483
BseSI GKGCMC 1 cut(s) 532
BseXI GCAGC 2 cut(s) 97, 119
BshFI GGCC 2 cut(s) 30, 93
BsiSI CCGG 1 cut(s) 286
BslFI GGGAC 2 cut(s) 296, 388
BslI CCNNNNNNNGG 2 cut(s) 279, 280
BsmAI GTCTC 2 cut(s) 188, 295
BsmFI GGGAC 2 cut(s) 296, 388
BsnI GGCC 2 cut(s) 30, 93
Bsp1286I GDGCHC 1 cut(s) 532
Bsp143I GATC 1 cut(s) 407
BspACI CCGC 1 cut(s) 105
BspANI GGCC 2 cut(s) 30, 93
BspCNI CTCAG 2 cut(s) 250, 482
BspLI GGNNCC 3 cut(s) 272, 284, 409
BspPI GGATC 2 cut(s) 402, 415
BspQI GCTCTTC 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 139
BssMI GATC 1 cut(s) 407
BssT1I CCWWGG 1 cut(s) 139
Bst4CI ACNGT 1 cut(s) 313
Bst6I CTCTTC 2 cut(s) 94, 420
BstAPI GCANNNNNTGC 1 cut(s) 441
BstC8I GCNNGC 1 cut(s) 70
BstDEI CTNAG 2 cut(s) 237, 469
BstKTI GATC 1 cut(s) 410
BstMAI GTCTC 2 cut(s) 188, 295
BstMBI GATC 1 cut(s) 407
BstMWI GCNNNNNNNGC 2 cut(s) 110, 441
BstNSI RCATGY 1 cut(s) 228
BstSCI CCNGG 1 cut(s) 285
BstSFI CTRYAG 1 cut(s) 312
BstSLI GKGCMC 1 cut(s) 532
BstV1I GCAGC 2 cut(s) 97, 119
BstX2I RGATCY 1 cut(s) 407
BstXI CCANNNNNNTGG 2 cut(s) 198, 418
BstYI RGATCY 1 cut(s) 407
BsuRI GGCC 2 cut(s) 30, 93
Cac8I GCNNGC 1 cut(s) 70
Cfr13I GGNCC 2 cut(s) 270, 283
CviAII CATG 2 cut(s) 198, 225
CviJI RGCY 8 cut(s) 30, 41, 72, 93, 104, 110, 137, 317
CviKI_1 RGCY 8 cut(s) 30, 41, 72, 93, 104, 110, 137, 317
DdeI CTNAG 2 cut(s) 237, 469
DpnI GATC 1 cut(s) 409
DpnII GATC 1 cut(s) 407
DraI TTTAAA 1 cut(s) 462
Eam1104I CTCTTC 2 cut(s) 94, 420
EarI CTCTTC 2 cut(s) 94, 420
Eco130I CCWWGG 1 cut(s) 139
Eco147I AGGCCT 2 cut(s) 30, 93
Eco32I GATATC 1 cut(s) 549
Eco47I GGWCC 2 cut(s) 270, 283
EcoRV GATATC 1 cut(s) 549
EcoT14I CCWWGG 1 cut(s) 139
ErhI CCWWGG 1 cut(s) 139
FaeI CATG 2 cut(s) 201, 228
FaiI YATR 7 cut(s) 62, 199, 209, 226, 363, 419, 486
FalI AAGNNNNNCTT 3 cut(s) 38, 18, 50
FaqI GGGAC 2 cut(s) 296, 388
FatI CATG 2 cut(s) 197, 224
Fnu4HI GCNGC 3 cut(s) 105, 108, 111
Fsp4HI GCNGC 3 cut(s) 105, 108, 111
FspBI CTAG 4 cut(s) 38, 140, 525, 556
GluI GCNGC 3 cut(s) 105, 108, 111
HaeIII GGCC 2 cut(s) 30, 93
HapII CCGG 1 cut(s) 286
Hin1II CATG 2 cut(s) 201, 228
HindIII AAGCTT 1 cut(s) 70
HinfI GANTC 2 cut(s) 175, 358
HpaII CCGG 1 cut(s) 286
Hpy188I TCNGA 3 cut(s) 98, 240, 252
Hpy188III TCNNGA 3 cut(s) 82, 191, 405
HpyAV CCTTC 1 cut(s) 41
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 293
HpyCH4V TGCA 1 cut(s) 435
HpyF10VI GCNNNNNNNGC 2 cut(s) 110, 441
HpyF3I CTNAG 2 cut(s) 237, 469
HpySE526I ACGT 1 cut(s) 293
Hsp92II CATG 2 cut(s) 201, 228
Kzo9I GATC 1 cut(s) 407
LguI GCTCTTC 1 cut(s) 94
LmnI GCTCC 1 cut(s) 449
LpnPI CCDG 6 cut(s) 102, 204, 290, 299, 390, 402
Lsp1109I GCAGC 2 cut(s) 97, 119
LweI GCATC 1 cut(s) 505
MaeI CTAG 4 cut(s) 38, 140, 525, 556
MaeII ACGT 1 cut(s) 293
MaeIII GTNAC 1 cut(s) 217
MalI GATC 1 cut(s) 409
MboI GATC 1 cut(s) 407
MboII GAAGA 4 cut(s) 26, 111, 434, 437
MflI RGATCY 1 cut(s) 407
MhlI GDGCHC 1 cut(s) 532
MluCI AATT 6 cut(s) 155, 325, 352, 380, 514, 534
MnlI CCTC 2 cut(s) 104, 160
MseI TTAA 6 cut(s) 24, 132, 158, 182, 383, 461
MslI CAYNNNNRTG 1 cut(s) 239
MspA1I CMGCKG 1 cut(s) 110
MspI CCGG 1 cut(s) 286
MspR9I CCNGG 1 cut(s) 287
MwoI GCNNNNNNNGC 2 cut(s) 110, 441
NciI CCSGG 1 cut(s) 287
NdeII GATC 1 cut(s) 407
NlaIII CATG 2 cut(s) 201, 228
NlaIV GGNNCC 3 cut(s) 272, 284, 409
NspI RCATGY 1 cut(s) 228
PceI AGGCCT 2 cut(s) 30, 93
PciI ACATGT 1 cut(s) 224
PciSI GCTCTTC 1 cut(s) 94
PfeI GAWTC 2 cut(s) 175, 358
PkrI GCNGC 3 cut(s) 106, 109, 112
PscI ACATGT 1 cut(s) 224
PsiI TTATAA 1 cut(s) 486
Psp1406I AACGTT 1 cut(s) 293
PspN4I GGNNCC 3 cut(s) 272, 284, 409
PspPI GGNCC 2 cut(s) 270, 283
PsuI RGATCY 1 cut(s) 407
PvuII CAGCTG 1 cut(s) 110
RseI CAYNNNNRTG 1 cut(s) 239
SapI GCTCTTC 1 cut(s) 94
SaqAI TTAA 6 cut(s) 24, 132, 158, 182, 383, 461
SatI GCNGC 3 cut(s) 105, 108, 111
Sau3AI GATC 1 cut(s) 407
Sau96I GGNCC 2 cut(s) 270, 283
ScrFI CCNGG 1 cut(s) 287
SduI GDGCHC 1 cut(s) 532
SetI ASST 6 cut(s) 43, 74, 112, 296, 334, 557
SfaNI GCATC 1 cut(s) 505
SfcI CTRYAG 1 cut(s) 312
SinI GGWCC 2 cut(s) 270, 283
SmiMI CAYNNNNRTG 1 cut(s) 239
Sse9I AATT 6 cut(s) 155, 325, 352, 380, 514, 534
SseBI AGGCCT 2 cut(s) 30, 93
SsiI CCGC 1 cut(s) 105
SspMI CTAG 4 cut(s) 38, 140, 525, 556
StuI AGGCCT 2 cut(s) 30, 93
StyD4I CCNGG 1 cut(s) 285
StyI CCWWGG 1 cut(s) 139
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 296
TasI AATT 6 cut(s) 155, 325, 352, 380, 514, 534
TauI GCSGC 1 cut(s) 107
TfiI GAWTC 2 cut(s) 175, 358
Tru1I TTAA 6 cut(s) 24, 132, 158, 182, 383, 461
Tru9I TTAA 6 cut(s) 24, 132, 158, 182, 383, 461
TseI GCWGC 2 cut(s) 107, 110
TspDTI ATGAA 3 cut(s) 49, 64, 257
VpaK11BI GGWCC 2 cut(s) 270, 283
XapI RAATTY 2 cut(s) 352, 514
XceI RCATGY 1 cut(s) 228
XmaJI CCTAGG 1 cut(s) 139
XspI CTAG 4 cut(s) 38, 140, 525, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.