Rroxscaffold_1G00030340

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0025537
Physical Location & Seq
Forward (+)
39833811 .. 39856516
22706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00030340.1

Sequence Viewer

Length: 354 bp
ATGGTTGGCTTTGCGCCTCGTATGCACCGGGTTGATCCCACGAACAAGTATATATTTGACATTGTGGGTTTAGAGCATCGTATGTGTGACGAGGTTGTTGAAAGGAGTTTGTTGTTTCGAGCTATATCTCGTGTGGCGTGTAAAGACGCAGCAGGATTTAGAGATCGAATGGAGTGCCTTGAGCCGCCGAACGTTTCCCCTAAGGCCTCTTGCTCCGATTTGCATCGTGGAGGTCGAATCGACGAAGAACATCCTAGGGTCCGAAGCTTGATTTATGGCACGGCTTGTGCTCCAATGGTTAAGGGCAGAGTTTTCGTGCAGCAGGTCAAGGGAGCGGTGGCTCCGGGAGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

117

Amino Acids

13.05

Weight (kDa)

8.71

Isoelectric Point (pI)

46.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0025537)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002541.1_g000003
rosa_roxburghii Rroxscaffold_1G00030340 Rroxscaffold_2G00129530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 313
AccBSI CCGCTC 1 cut(s) 335
AciI CCGC 2 cut(s) 185, 335
AclI AACGTT 1 cut(s) 192
AclWI GGATC 1 cut(s) 29
AgsI TTSAA 1 cut(s) 101
AluBI AGCT 2 cut(s) 122, 267
AluI AGCT 2 cut(s) 122, 267
Alw21I GWGCWC 1 cut(s) 292
AlwI GGATC 1 cut(s) 29
AoxI GGCC 1 cut(s) 204
ApeKI GCWGC 2 cut(s) 149, 319
AspA2I CCTAGG 1 cut(s) 254
AspLEI GCGC 1 cut(s) 16
AspS9I GGNCC 1 cut(s) 259
AsuC2I CCSGG 2 cut(s) 29, 345
AvaII GGWCC 1 cut(s) 259
AvrII CCTAGG 1 cut(s) 254
AxyI CCTNAGG 1 cut(s) 201
BauI CACGAG 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 2 cut(s) 161, 331
BceAI ACGGC 1 cut(s) 297
BcgI CGANNNNNNTGC 4 cut(s) 156, 190, 295, 329
BcnI CCSGG 2 cut(s) 29, 345
BfaI CTAG 1 cut(s) 255
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 3 cut(s) 150, 185, 320
BlnI CCTAGG 1 cut(s) 254
BlsI GCNGC 3 cut(s) 151, 186, 321
Bme1390I CCNGG 2 cut(s) 29, 345
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 2 cut(s) 260, 342
BmrFI CCNGG 2 cut(s) 29, 345
BmsI GCATC 2 cut(s) 85, 232
BpuEI CTTGAG 1 cut(s) 200
BpuMI CCSGG 2 cut(s) 29, 345
BsaBI GATNNNNATC 1 cut(s) 222
BsaJI CCNNGG 1 cut(s) 254
Bse21I CCTNAGG 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 222
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 1 cut(s) 250
BseJI GATNNNNATC 1 cut(s) 222
BseXI GCAGC 2 cut(s) 161, 331
BsgI GTGCAG 1 cut(s) 338
BshFI GGCC 1 cut(s) 206
BsiHKAI GWGCWC 1 cut(s) 292
BsiSI CCGG 2 cut(s) 28, 344
BsnI GGCC 1 cut(s) 206
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 2 cut(s) 34, 163
BspACI CCGC 2 cut(s) 185, 335
BspANI GGCC 1 cut(s) 206
BspLI GGNNCC 2 cut(s) 260, 342
BspMI ACCTGC 1 cut(s) 313
BspPI GGATC 1 cut(s) 29
BsrBI CCGCTC 1 cut(s) 335
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 2 cut(s) 34, 163
BssSI CACGAG 1 cut(s) 129
BssT1I CCWWGG 1 cut(s) 254
Bst2BI CACGAG 1 cut(s) 129
BstDEI CTNAG 1 cut(s) 201
BstF5I GGATG 1 cut(s) 250
BstHHI GCGC 1 cut(s) 16
BstKTI GATC 2 cut(s) 37, 166
BstMBI GATC 2 cut(s) 34, 163
BstMWI GCNNNNNNNGC 1 cut(s) 22
BstSCI CCNGG 2 cut(s) 27, 343
BstV1I GCAGC 2 cut(s) 161, 331
Bsu36I CCTNAGG 1 cut(s) 201
BsuRI GGCC 1 cut(s) 206
BtsCI GGATG 1 cut(s) 250
BveI ACCTGC 1 cut(s) 313
CfoI GCGC 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 259
CseI GACGC 1 cut(s) 155
CviJI RGCY 7 cut(s) 9, 122, 184, 206, 267, 284, 341
CviKI_1 RGCY 7 cut(s) 9, 122, 184, 206, 267, 284, 341
DdeI CTNAG 1 cut(s) 201
DpnI GATC 2 cut(s) 36, 165
DpnII GATC 2 cut(s) 34, 163
Eco130I CCWWGG 1 cut(s) 254
Eco147I AGGCCT 1 cut(s) 206
Eco47I GGWCC 1 cut(s) 259
Eco81I CCTNAGG 1 cut(s) 201
EcoT14I CCWWGG 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 254
FaiI YATR 6 cut(s) 23, 51, 53, 83, 125, 276
Fnu4HI GCNGC 3 cut(s) 150, 185, 320
FokI GGATG 1 cut(s) 237
Fsp4HI GCNGC 3 cut(s) 150, 185, 320
FspBI CTAG 1 cut(s) 255
GlaI GCGC 1 cut(s) 15
GluI GCNGC 3 cut(s) 150, 185, 320
HaeIII GGCC 1 cut(s) 206
HapII CCGG 2 cut(s) 28, 344
HgaI GACGC 1 cut(s) 155
HhaI GCGC 1 cut(s) 16
Hin6I GCGC 1 cut(s) 14
HinP1I GCGC 1 cut(s) 14
HindIII AAGCTT 1 cut(s) 265
HinfI GANTC 1 cut(s) 237
HpaII CCGG 2 cut(s) 28, 344
Hpy188I TCNGA 2 cut(s) 217, 263
Hpy99I CGWCG 1 cut(s) 245
HpyCH4IV ACGT 1 cut(s) 192
HpyCH4V TGCA 3 cut(s) 25, 223, 319
HpyF10VI GCNNNNNNNGC 1 cut(s) 22
HpyF3I CTNAG 1 cut(s) 201
HpySE526I ACGT 1 cut(s) 192
HspAI GCGC 1 cut(s) 14
Kzo9I GATC 2 cut(s) 34, 163
LmnI GCTCC 4 cut(s) 218, 295, 332, 346
LpnPI CCDG 3 cut(s) 41, 138, 308
Lsp1109I GCAGC 2 cut(s) 161, 331
LweI GCATC 2 cut(s) 85, 232
MaeI CTAG 1 cut(s) 255
MaeII ACGT 1 cut(s) 192
MaeIII GTNAC 1 cut(s) 86
MalI GATC 2 cut(s) 36, 165
MbiI CCGCTC 1 cut(s) 335
MboI GATC 2 cut(s) 34, 163
MboII GAAGA 1 cut(s) 257
MhlI GDGCHC 1 cut(s) 292
MnlI CCTC 4 cut(s) 27, 85, 217, 224
MseI TTAA 1 cut(s) 300
MspI CCGG 2 cut(s) 28, 344
MspR9I CCNGG 2 cut(s) 29, 345
MwoI GCNNNNNNNGC 1 cut(s) 22
NciI CCSGG 2 cut(s) 29, 345
NdeII GATC 2 cut(s) 34, 163
NlaIV GGNNCC 2 cut(s) 260, 342
NmuCI GTSAC 1 cut(s) 86
PceI AGGCCT 1 cut(s) 206
PcsI WCGNNNNNNNCGW 1 cut(s) 232
PfeI GAWTC 1 cut(s) 237
PfoI TCCNGGA 1 cut(s) 343
PkrI GCNGC 3 cut(s) 151, 186, 321
Psp1406I AACGTT 1 cut(s) 192
PspN4I GGNNCC 2 cut(s) 260, 342
PspPI GGNCC 1 cut(s) 259
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 3 cut(s) 150, 185, 320
Sau3AI GATC 2 cut(s) 34, 163
Sau96I GGNCC 1 cut(s) 259
ScrFI CCNGG 2 cut(s) 29, 345
SduI GDGCHC 1 cut(s) 292
SetI ASST 6 cut(s) 96, 124, 195, 235, 269, 327
SfaNI GCATC 2 cut(s) 85, 232
SinI GGWCC 1 cut(s) 259
SmlI CTYRAG 1 cut(s) 179
SmoI CTYRAG 1 cut(s) 179
SseBI AGGCCT 1 cut(s) 206
SsiI CCGC 2 cut(s) 185, 335
SspMI CTAG 1 cut(s) 255
StuI AGGCCT 1 cut(s) 206
StyD4I CCNGG 2 cut(s) 27, 343
StyI CCWWGG 1 cut(s) 254
TaiI ACGT 1 cut(s) 195
TaqI TCGA 4 cut(s) 118, 166, 235, 240
TauI GCSGC 1 cut(s) 187
TfiI GAWTC 1 cut(s) 237
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TseFI GTSAC 1 cut(s) 86
TseI GCWGC 2 cut(s) 149, 319
Tsp45I GTSAC 1 cut(s) 86
VpaK11BI GGWCC 1 cut(s) 259
XmaJI CCTAGG 1 cut(s) 254
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.