Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0022756

Physical Location & Seq

Genomic Coordinates Forward (+)

51303812 .. 51304508

Gene Structure 697 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00035210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCTTCATCTCAGCGCAAGGCATGGACTAGTGAAATGCAAGAAGCCTTCAGAATTAAAGTCTACGACAATCTGAGTTGGCCGGCCATTAAAGGCAGGCCAGCAACCCTCTCTATATTATGCAGATGCCAAATTATATACCATTTCCTAGACCCTCTCGGCCCAACTGAGACCAACAAAGTCAGGCTCATAGTTCAGAAGTCTCACCTTGCAACTCTTCCTAATCTCACCTTTTATTATGTCGATACCGAAGAGCCTGAGAAGGCAGACGTCCACAGATGGTTTTCTTCAATCTCAAGCAATCCAAAGAGGCGCATTTCTGCCCCTCCCCGCCGGATACACGTGGTGGTTCAAGGCAGCGGTGATGCCCACGAGCTCGTGGTGGACTTGGACACCAACGACGTCTCCAACCACGTCTGCACCGGTAATGGCTATCCTCCTTTCACCTTTAATGAGTTGTTCAGAGCTAGTAAGCTTCCTTTGCCTTACCCCAAATTCAAGAAATCAATGTCAACTAGGGGATTGAATTTGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0007154 GO:0007165 GO:0008131 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010035 GO:0010087 GO:0010089 GO:0010941 GO:0016491 GO:0016638 GO:0016641 GO:0023052 GO:0030312 GO:0032502 GO:0032870 GO:0042221 GO:0043067 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0065007 GO:0070887 GO:0071229 GO:0071241 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0090059 GO:0097184 GO:0097185 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

178

Amino Acids

20.26

Weight (kDa)

9.45

Isoelectric Point (pI)

46.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_amine_oxidN2	PF02727	48 - 136	3.5e-16	Copper amine oxidase, N2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0022756)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0045861
rosa_roxburghii	Rroxscaffold_1G00035210
rosa_samantha	Rh5BG316200 Rh5DG326500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	273, 405
AccI	GTMKAC	1 cut(s)	63
AciI	CCGC	2 cut(s)	331, 360
AcoI	YGGCCR	2 cut(s)	80, 84
AcsI	RAATTY	2 cut(s)	494, 526
AcuI	CTGAAG	1 cut(s)	34
AcvI	CACGTG	1 cut(s)	343
AcyI	GRCGYC	2 cut(s)	270, 402
AdeI	CACNNNGTG	1 cut(s)	346
AflIII	ACRYGT	1 cut(s)	340
AgeI	ACCGGT	1 cut(s)	422
AgsI	TTSAA	4 cut(s)	291, 353, 499, 526
AhlI	ACTAGT	1 cut(s)	29
AjiI	CACGTC	1 cut(s)	415
AluBI	AGCT	3 cut(s)	376, 467, 475
AluI	AGCT	3 cut(s)	376, 467, 475
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	3 cut(s)	164, 207, 409
AoxI	GGCC	4 cut(s)	80, 84, 98, 160
ApeKI	GCWGC	1 cut(s)	357
ApoI	RAATTY	2 cut(s)	494, 526
AsiGI	ACCGGT	1 cut(s)	422
AspLEI	GCGC	2 cut(s)	18, 315
AspS9I	GGNCC	1 cut(s)	161
AsuHPI	GGTGA	4 cut(s)	197, 220, 374, 436
BanII	GRGCYC	1 cut(s)	378
BauI	CACGAG	2 cut(s)	371, 377
BbrPI	CACGTG	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	1 cut(s)	369
BccI	CCATC	1 cut(s)	273
BciVI	GTATCC	1 cut(s)	330
BcoDI	GTCTC	3 cut(s)	164, 207, 409
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	4 cut(s)	30, 149, 468, 516
BfuI	GTATCC	1 cut(s)	330
BisI	GCNGC	1 cut(s)	358
BlsI	GCNGC	1 cut(s)	359
BmgBI	CACGTC	1 cut(s)	415
BmgT120I	GGNCC	1 cut(s)	161
BmsI	GCATC	2 cut(s)	116, 355
BpuEI	CTTGAG	1 cut(s)	280
BsaAI	YACGTR	1 cut(s)	343
BsaHI	GRCGYC	2 cut(s)	270, 402
BsaI	GGTCTC	1 cut(s)	164
BsaWI	WCCGGW	1 cut(s)	422
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bse118I	RCCGGY	2 cut(s)	82, 422
BseMII	CTCAG	4 cut(s)	26, 65, 159, 249
BseXI	GCAGC	1 cut(s)	369
BsgI	GTGCAG	1 cut(s)	403
BshFI	GGCC	4 cut(s)	82, 86, 100, 162
BshTI	ACCGGT	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	378
BsiSI	CCGG	3 cut(s)	83, 334, 423
BsmAI	GTCTC	3 cut(s)	164, 207, 409
BsmBI	CGTCTC	1 cut(s)	409
BsnI	GGCC	4 cut(s)	82, 86, 100, 162
Bso31I	GGTCTC	1 cut(s)	164
Bsp1286I	GDGCHC	1 cut(s)	378
BspACI	CCGC	2 cut(s)	331, 360
BspANI	GGCC	4 cut(s)	82, 86, 100, 162
BspCNI	CTCAG	4 cut(s)	25, 66, 160, 250
BspQI	GCTCTTC	1 cut(s)	246
BspTNI	GGTCTC	1 cut(s)	164
BsrFI	RCCGGY	2 cut(s)	82, 422
BssAI	RCCGGY	2 cut(s)	82, 422
BssNI	GRCGYC	2 cut(s)	270, 402
BssSI	CACGAG	2 cut(s)	371, 377
Bst2BI	CACGAG	2 cut(s)	371, 377
Bst6I	CTCTTC	2 cut(s)	222, 246
BstACI	GRCGYC	2 cut(s)	270, 402
BstBAI	YACGTR	1 cut(s)	343
BstC8I	GCNNGC	3 cut(s)	84, 98, 102
BstDEI	CTNAG	4 cut(s)	12, 74, 168, 258
BstHHI	GCGC	2 cut(s)	18, 315
BstMAI	GTCTC	3 cut(s)	164, 207, 409
BstMWI	GCNNNNNNNGC	1 cut(s)	481
BstV1I	GCAGC	1 cut(s)	369
BsuI	GTATCC	1 cut(s)	330
BsuRI	GGCC	4 cut(s)	82, 86, 100, 162
BtrI	CACGTC	1 cut(s)	415
Cac8I	GCNNGC	3 cut(s)	84, 98, 102
CfoI	GCGC	2 cut(s)	18, 315
Cfr10I	RCCGGY	2 cut(s)	82, 422
Cfr13I	GGNCC	1 cut(s)	161
CspAI	ACCGGT	1 cut(s)	422
CviAII	CATG	1 cut(s)	24
DdeI	CTNAG	4 cut(s)	12, 74, 168, 258
DraIII	CACNNNGTG	1 cut(s)	346
EaeI	YGGCCR	2 cut(s)	80, 84
Eam1104I	CTCTTC	2 cut(s)	222, 246
EarI	CTCTTC	2 cut(s)	222, 246
Ecl136II	GAGCTC	1 cut(s)	376
Eco24I	GRGCYC	1 cut(s)	378
Eco31I	GGTCTC	1 cut(s)	164
Eco53kI	GAGCTC	1 cut(s)	376
Eco57I	CTGAAG	1 cut(s)	34
Eco72I	CACGTG	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	378
Esp3I	CGTCTC	1 cut(s)	409
FaeI	CATG	1 cut(s)	27
FaiI	YATR	7 cut(s)	25, 116, 121, 137, 139, 191, 240
FatI	CATG	1 cut(s)	23
FauI	CCCGC	1 cut(s)	338
FblI	GTMKAC	1 cut(s)	63
Fnu4HI	GCNGC	1 cut(s)	358
FriOI	GRGCYC	1 cut(s)	378
FseI	GGCCGGCC	1 cut(s)	86
Fsp4HI	GCNGC	1 cut(s)	358
FspBI	CTAG	4 cut(s)	30, 149, 468, 516
GlaI	GCGC	2 cut(s)	17, 314
GluI	GCNGC	1 cut(s)	358
HaeIII	GGCC	4 cut(s)	82, 86, 100, 162
HapII	CCGG	3 cut(s)	83, 334, 423
HhaI	GCGC	2 cut(s)	18, 315
Hin1I	GRCGYC	2 cut(s)	270, 402
Hin1II	CATG	1 cut(s)	27
Hin6I	GCGC	2 cut(s)	16, 313
HinP1I	GCGC	2 cut(s)	16, 313
HincII	GTYRAC	1 cut(s)	513
HindII	GTYRAC	1 cut(s)	513
HindIII	AAGCTT	1 cut(s)	473
HpaII	CCGG	3 cut(s)	83, 334, 423
HphI	GGTGA	4 cut(s)	197, 220, 374, 436
Hpy166II	GTNNAC	4 cut(s)	64, 274, 385, 513
Hpy188I	TCNGA	4 cut(s)	53, 75, 198, 464
Hpy188III	TCNNGA	1 cut(s)	499
Hpy8I	GTNNAC	4 cut(s)	64, 274, 385, 513
Hpy99I	CGWCG	1 cut(s)	404
HpyAV	CCTTC	2 cut(s)	58, 256
HpyCH4IV	ACGT	4 cut(s)	270, 342, 402, 414
HpyCH4V	TGCA	4 cut(s)	40, 123, 212, 420
HpyF10VI	GCNNNNNNNGC	1 cut(s)	481
HpyF3I	CTNAG	4 cut(s)	12, 74, 168, 258
HpySE526I	ACGT	4 cut(s)	270, 342, 402, 414
Hsp92I	GRCGYC	2 cut(s)	270, 402
Hsp92II	CATG	1 cut(s)	27
HspAI	GCGC	2 cut(s)	16, 313
KroI	GCCGGC	1 cut(s)	82
KroNI	GCCGGC	1 cut(s)	84
LguI	GCTCTTC	1 cut(s)	246
LpnPI	CCDG	7 cut(s)	82, 96, 114, 169, 270, 347, 436
Lsp1109I	GCAGC	1 cut(s)	369
LweI	GCATC	2 cut(s)	116, 355
MaeI	CTAG	4 cut(s)	30, 149, 468, 516
MaeII	ACGT	4 cut(s)	270, 342, 402, 414
MboII	GAAGA	3 cut(s)	209, 263, 279
MhlI	GDGCHC	1 cut(s)	378
MluCI	AATT	4 cut(s)	54, 132, 494, 526
MmeI	TCCRAC	1 cut(s)	432
MnlI	CCTC	5 cut(s)	119, 165, 303, 336, 447
MroNI	GCCGGC	1 cut(s)	82
MseI	TTAA	4 cut(s)	57, 90, 450, 535
MspA1I	CMGCKG	1 cut(s)	360
MspI	CCGG	3 cut(s)	83, 334, 423
MwoI	GCNNNNNNNGC	1 cut(s)	481
NaeI	GCCGGC	1 cut(s)	84
NgoMIV	GCCGGC	1 cut(s)	82
NlaIII	CATG	1 cut(s)	27
NmeAIII	GCCGAG	1 cut(s)	138
PciSI	GCTCTTC	1 cut(s)	246
PdiI	GCCGGC	1 cut(s)	84
PinAI	ACCGGT	1 cut(s)	422
PkrI	GCNGC	1 cut(s)	359
PmaCI	CACGTG	1 cut(s)	343
PmlI	CACGTG	1 cut(s)	343
Ppu21I	YACGTR	1 cut(s)	343
Psp124BI	GAGCTC	1 cut(s)	378
PspCI	CACGTG	1 cut(s)	343
PspPI	GGNCC	1 cut(s)	161
RigI	GGCCGGCC	1 cut(s)	86
SacI	GAGCTC	1 cut(s)	378
SapI	GCTCTTC	1 cut(s)	246
SaqAI	TTAA	4 cut(s)	57, 90, 450, 535
SatI	GCNGC	1 cut(s)	358
Sau96I	GGNCC	1 cut(s)	161
SduI	GDGCHC	1 cut(s)	378
SfaNI	GCATC	2 cut(s)	116, 355
SmlI	CTYRAG	1 cut(s)	295
SmoI	CTYRAG	1 cut(s)	295
SpeI	ACTAGT	1 cut(s)	29
Sse9I	AATT	4 cut(s)	54, 132, 494, 526
SsiI	CCGC	2 cut(s)	331, 360
SspMI	CTAG	4 cut(s)	30, 149, 468, 516
SstI	GAGCTC	1 cut(s)	378
TaiI	ACGT	4 cut(s)	273, 345, 405, 417
TaqI	TCGA	1 cut(s)	243
TasI	AATT	4 cut(s)	54, 132, 494, 526
Tru1I	TTAA	4 cut(s)	57, 90, 450, 535
Tru9I	TTAA	4 cut(s)	57, 90, 450, 535
TseI	GCWGC	1 cut(s)	357
XapI	RAATTY	2 cut(s)	494, 526
XmiI	GTMKAC	1 cut(s)	63
XspI	CTAG	4 cut(s)	30, 149, 468, 516
ZraI	GACGTC	2 cut(s)	271, 403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.