Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0022756

Physical Location & Seq

Genomic Coordinates Reverse (-)

42062296 .. 42062613

Gene Structure 318 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG316200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGATCAAAGCGTGTGTGCTATTGATTCTATTCACTCTGCTTCTTATACACAAATGGTTTTCTTCAAGCTCAAGCAATCCAAAGAGGCGCATTTTTGCCCCTCCCCGCCGGGTACACGTGGTGGTTCAAGGCGGCAGTGATGCCTATGAGCTCATGGTGGACTTGGACACCAACATTATCATATTCAACCACGTCTACACCGGTAATGCATGGTTATCGTCCTTCACCTTTAATGAGTTGTTCAGAGCTAGTAAGCTTCCTTTGCCTTACCCCAAATTCAAGAAATCAATGTCAACTAGGGGATTGAATTTGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005618 GO:0005623 GO:0007154 GO:0007165 GO:0008131 GO:0008150 GO:0008152 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009888 GO:0009987 GO:0010033 GO:0010035 GO:0010087 GO:0010089 GO:0010941 GO:0016491 GO:0016638 GO:0016641 GO:0023052 GO:0030312 GO:0032502 GO:0032870 GO:0042221 GO:0043067 GO:0044464 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0052597 GO:0055114 GO:0065007 GO:0070887 GO:0071229 GO:0071241 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0090059 GO:0097184 GO:0097185 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

ko00260 ko00350 ko00360 ko00410 ko00950 ko00960 ko01100 ko01110 map00260 map00350 map00360 map00410 map00950 map00960 map01100 map01110

Pfam Domains

Protein Families

Cu_amine_oxid Cu_amine_oxidN2 Cu_amine_oxidN3

Protein Analysis

105

Amino Acids

12.0

Weight (kDa)

10.17

Isoelectric Point (pI)

49.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0022756)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0045861
rosa_roxburghii	Rroxscaffold_1G00035210
rosa_samantha	Rh5BG316200 Rh5DG326500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	195
AciI	CCGC	2 cut(s)	106, 132
AcsI	RAATTY	2 cut(s)	275, 307
AcvI	CACGTG	1 cut(s)	118
AdeI	CACNNNGTG	1 cut(s)	121
AfaI	GTAC	1 cut(s)	114
AflIII	ACRYGT	1 cut(s)	115
AgeI	ACCGGT	1 cut(s)	200
AgsI	TTSAA	5 cut(s)	66, 128, 187, 280, 307
AjiI	CACGTC	1 cut(s)	193
AluBI	AGCT	4 cut(s)	69, 151, 248, 256
AluI	AGCT	4 cut(s)	69, 151, 248, 256
Alw21I	GWGCWC	1 cut(s)	153
ApoI	RAATTY	2 cut(s)	275, 307
AsiGI	ACCGGT	1 cut(s)	200
AspLEI	GCGC	1 cut(s)	90
AsuC2I	CCSGG	1 cut(s)	110
AsuHPI	GGTGA	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	153
BbrPI	CACGTG	1 cut(s)	118
Bbv12I	GWGCWC	1 cut(s)	153
BcgI	CGANNNNNNTGC	2 cut(s)	198, 232
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	1 cut(s)	110
BfaI	CTAG	2 cut(s)	249, 297
BisI	GCNGC	1 cut(s)	133
BlsI	GCNGC	1 cut(s)	134
Bme1390I	CCNGG	1 cut(s)	110
BmgBI	CACGTC	1 cut(s)	193
BmrFI	CCNGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	55
BpuMI	CCSGG	1 cut(s)	110
BsaAI	YACGTR	1 cut(s)	118
BsaWI	WCCGGW	1 cut(s)	200
Bse118I	RCCGGY	1 cut(s)	200
BshTI	ACCGGT	1 cut(s)	200
BsiHKAI	GWGCWC	1 cut(s)	153
BsiSI	CCGG	2 cut(s)	109, 201
Bsp1286I	GDGCHC	1 cut(s)	153
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	2 cut(s)	106, 132
BsrFI	RCCGGY	1 cut(s)	200
BssAI	RCCGGY	1 cut(s)	200
BssMI	GATC	1 cut(s)	3
BstBAI	YACGTR	1 cut(s)	118
BstHHI	GCGC	1 cut(s)	90
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	1 cut(s)	262
BstSCI	CCNGG	1 cut(s)	108
BtrI	CACGTC	1 cut(s)	193
BtsI	GCAGTG	1 cut(s)	142
BtsIMutI	CAGTG	1 cut(s)	142
CfoI	GCGC	1 cut(s)	90
Cfr10I	RCCGGY	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	113
CspAI	ACCGGT	1 cut(s)	200
CviAII	CATG	2 cut(s)	154, 210
CviJI	RGCY	4 cut(s)	69, 151, 248, 256
CviKI_1	RGCY	4 cut(s)	69, 151, 248, 256
CviQI	GTAC	1 cut(s)	113
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
DraIII	CACNNNGTG	1 cut(s)	121
Ecl136II	GAGCTC	1 cut(s)	151
Eco24I	GRGCYC	1 cut(s)	153
Eco53kI	GAGCTC	1 cut(s)	151
Eco72I	CACGTG	1 cut(s)	118
EcoICRI	GAGCTC	1 cut(s)	151
EcoT22I	ATGCAT	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	153
FaeI	CATG	2 cut(s)	157, 213
FaiI	YATR	5 cut(s)	47, 147, 155, 182, 211
FatI	CATG	2 cut(s)	153, 209
FauI	CCCGC	1 cut(s)	113
FbaI	TGATCA	1 cut(s)	3
FblI	GTMKAC	1 cut(s)	195
Fnu4HI	GCNGC	1 cut(s)	133
FriOI	GRGCYC	1 cut(s)	153
Fsp4HI	GCNGC	1 cut(s)	133
FspBI	CTAG	2 cut(s)	249, 297
GlaI	GCGC	1 cut(s)	89
GluI	GCNGC	1 cut(s)	133
HapII	CCGG	2 cut(s)	109, 201
HhaI	GCGC	1 cut(s)	90
Hin1II	CATG	2 cut(s)	157, 213
Hin6I	GCGC	1 cut(s)	88
HinP1I	GCGC	1 cut(s)	88
HincII	GTYRAC	1 cut(s)	294
HindII	GTYRAC	1 cut(s)	294
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	1 cut(s)	25
HpaII	CCGG	2 cut(s)	109, 201
HphI	GGTGA	1 cut(s)	217
Hpy166II	GTNNAC	4 cut(s)	115, 160, 196, 294
Hpy188I	TCNGA	1 cut(s)	245
Hpy188III	TCNNGA	1 cut(s)	280
Hpy8I	GTNNAC	4 cut(s)	115, 160, 196, 294
HpyAV	CCTTC	1 cut(s)	232
HpyCH4IV	ACGT	2 cut(s)	117, 192
HpyCH4V	TGCA	1 cut(s)	209
HpyF10VI	GCNNNNNNNGC	1 cut(s)	262
HpySE526I	ACGT	2 cut(s)	117, 192
Hsp92II	CATG	2 cut(s)	157, 213
HspAI	GCGC	1 cut(s)	88
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	1 cut(s)	3
LpnPI	CCDG	2 cut(s)	122, 214
LweI	GCATC	1 cut(s)	130
MaeI	CTAG	2 cut(s)	249, 297
MaeII	ACGT	2 cut(s)	117, 192
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	54
MhlI	GDGCHC	1 cut(s)	153
MluCI	AATT	2 cut(s)	275, 307
MnlI	CCTC	2 cut(s)	78, 111
Mph1103I	ATGCAT	1 cut(s)	211
MseI	TTAA	2 cut(s)	231, 316
MspI	CCGG	2 cut(s)	109, 201
MspR9I	CCNGG	1 cut(s)	110
MwoI	GCNNNNNNNGC	1 cut(s)	262
NciI	CCSGG	1 cut(s)	110
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	2 cut(s)	157, 213
NsiI	ATGCAT	1 cut(s)	211
PfeI	GAWTC	1 cut(s)	25
PinAI	ACCGGT	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	134
PmaCI	CACGTG	1 cut(s)	118
PmlI	CACGTG	1 cut(s)	118
Ppu21I	YACGTR	1 cut(s)	118
Psp124BI	GAGCTC	1 cut(s)	153
PspCI	CACGTG	1 cut(s)	118
RsaI	GTAC	1 cut(s)	114
RsaNI	GTAC	1 cut(s)	113
SacI	GAGCTC	1 cut(s)	153
SaqAI	TTAA	2 cut(s)	231, 316
SatI	GCNGC	1 cut(s)	133
Sau3AI	GATC	1 cut(s)	3
ScrFI	CCNGG	1 cut(s)	110
SduI	GDGCHC	1 cut(s)	153
SetI	ASST	7 cut(s)	71, 120, 153, 195, 230, 250, 258
SfaNI	GCATC	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	70
SmoI	CTYRAG	1 cut(s)	70
Sse9I	AATT	2 cut(s)	275, 307
SsiI	CCGC	2 cut(s)	106, 132
SspMI	CTAG	2 cut(s)	249, 297
SstI	GAGCTC	1 cut(s)	153
StyD4I	CCNGG	1 cut(s)	108
TaiI	ACGT	2 cut(s)	120, 195
TasI	AATT	2 cut(s)	275, 307
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	1 cut(s)	25
Tru1I	TTAA	2 cut(s)	231, 316
Tru9I	TTAA	2 cut(s)	231, 316
TscAI	CASTG	1 cut(s)	142
TspRI	CASTG	1 cut(s)	142
XapI	RAATTY	2 cut(s)	275, 307
XmiI	GTMKAC	1 cut(s)	195
XspI	CTAG	2 cut(s)	249, 297
Zsp2I	ATGCAT	1 cut(s)	211

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.