Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0031766

Physical Location & Seq

Genomic Coordinates Reverse (-)

51640112 .. 51641216

Gene Structure 1105 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00035540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGTGGCAGAGTTGCTATTATGTTCCACCATCCCTTCGTCCCAAACTAACGATCGCTAGGACACCACCATTTGCTGGAACAAGGGGAGCGTTGGAGCAGCAATCTGCTAGAAAGGTCTGCGGGACTTTATCCGGTGCAAAGCTCACTAGCAGTTTTCCTTCTCCAAAGTTGCATGCTTCTATAGGCACAGGTGTGCAGCGCAAATTGGATATGGCTAACCAGGATGCTAAAAAGAATGATAAATACTTGAAGAAGAGCTCTGCCAATCAACAAAAATATCGGCCCCCTGGAAAGAGCAGTCCTAGTGAGTGGATGCATTATGTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

109

Amino Acids

12.1

Weight (kDa)

10.06

Isoelectric Point (pI)

62.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031766)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00035540
rosa_samantha	Rh7BG352500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	74
AciI	CCGC	1 cut(s)	120
AfiI	CCNNNNNNNGG	1 cut(s)	74
AgsI	TTSAA	2 cut(s)	250, 326
AjnI	CCWGG	2 cut(s)	219, 286
AleI	CACNNNNGTG	1 cut(s)	191
AluBI	AGCT	2 cut(s)	142, 258
AluI	AGCT	2 cut(s)	142, 258
Alw21I	GWGCWC	1 cut(s)	260
AoxI	GGCC	1 cut(s)	281
ApeKI	GCWGC	2 cut(s)	97, 196
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	1 cut(s)	282
BanII	GRGCYC	1 cut(s)	260
Bbv12I	GWGCWC	1 cut(s)	260
BbvI	GCAGC	2 cut(s)	109, 208
BccI	CCATC	1 cut(s)	37
BciT130I	CCWGG	2 cut(s)	221, 288
BfaI	CTAG	4 cut(s)	57, 108, 147, 303
BfmI	CTRYAG	1 cut(s)	180
BisI	GCNGC	2 cut(s)	98, 197
BlsI	GCNGC	2 cut(s)	99, 198
Bme1390I	CCNGG	2 cut(s)	221, 288
BmgT120I	GGNCC	1 cut(s)	282
BmiI	GGNNCC	1 cut(s)	284
BmrFI	CCNGG	2 cut(s)	221, 288
BmsI	GCATC	2 cut(s)	214, 303
BsaJI	CCNNGG	1 cut(s)	286
BsaWI	WCCGGW	1 cut(s)	131
Bsc4I	CCNNNNNNNGG	1 cut(s)	74
BseBI	CCWGG	2 cut(s)	221, 288
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	3 cut(s)	29, 229, 318
BseLI	CCNNNNNNNGG	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	109, 208
BsgI	GTGCAG	1 cut(s)	215
Bsh1285I	CGRYCG	1 cut(s)	54
BshFI	GGCC	1 cut(s)	283
BsiEI	CGRYCG	1 cut(s)	54
BsiHKAI	GWGCWC	1 cut(s)	260
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	2 cut(s)	24, 136
BslI	CCNNNNNNNGG	1 cut(s)	74
BsmFI	GGGAC	2 cut(s)	24, 136
BsnI	GGCC	1 cut(s)	283
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	51
BspACI	CCGC	1 cut(s)	120
BspANI	GGCC	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	284
BspQI	GCTCTTC	1 cut(s)	248
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	1 cut(s)	51
Bst2UI	CCWGG	2 cut(s)	221, 288
Bst6I	CTCTTC	1 cut(s)	248
BstC8I	GCNNGC	1 cut(s)	174
BstF5I	GGATG	3 cut(s)	29, 229, 318
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	1 cut(s)	54
BstMBI	GATC	1 cut(s)	51
BstMCI	CGRYCG	1 cut(s)	54
BstNI	CCWGG	2 cut(s)	221, 288
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	2 cut(s)	219, 286
BstSFI	CTRYAG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	109, 208
BsuRI	GGCC	1 cut(s)	283
BtsCI	GGATG	3 cut(s)	29, 229, 318
Cac8I	GCNNGC	1 cut(s)	174
CfoI	GCGC	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	282
CviAII	CATG	1 cut(s)	173
CviJI	RGCY	4 cut(s)	142, 215, 258, 283
CviKI_1	RGCY	4 cut(s)	142, 215, 258, 283
DpnI	GATC	1 cut(s)	53
DpnII	GATC	1 cut(s)	51
Eam1104I	CTCTTC	1 cut(s)	248
EarI	CTCTTC	1 cut(s)	248
Ecl136II	GAGCTC	1 cut(s)	258
Eco24I	GRGCYC	1 cut(s)	260
Eco53kI	GAGCTC	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	258
EcoRII	CCWGG	2 cut(s)	219, 286
EcoT22I	ATGCAT	1 cut(s)	318
EcoT38I	GRGCYC	1 cut(s)	260
FaeI	CATG	1 cut(s)	176
FaiI	YATR	5 cut(s)	21, 174, 182, 212, 321
FaqI	GGGAC	2 cut(s)	24, 136
FatI	CATG	1 cut(s)	172
FauI	CCCGC	1 cut(s)	113
Fnu4HI	GCNGC	2 cut(s)	98, 197
FokI	GGATG	3 cut(s)	16, 236, 325
FriOI	GRGCYC	1 cut(s)	260
Fsp4HI	GCNGC	2 cut(s)	98, 197
FspBI	CTAG	4 cut(s)	57, 108, 147, 303
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	2 cut(s)	98, 197
HaeIII	GGCC	1 cut(s)	283
HapII	CCGG	1 cut(s)	132
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	1 cut(s)	176
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HpaII	CCGG	1 cut(s)	132
HpyAV	CCTTC	2 cut(s)	44, 168
HpyCH4V	TGCA	4 cut(s)	137, 172, 196, 316
Hsp92II	CATG	1 cut(s)	176
HspAI	GCGC	1 cut(s)	199
Kzo9I	GATC	1 cut(s)	51
LguI	GCTCTTC	1 cut(s)	248
LmnI	GCTCC	2 cut(s)	86, 94
LpnPI	CCDG	7 cut(s)	60, 145, 174, 206, 233, 273, 300
Lsp1109I	GCAGC	2 cut(s)	109, 208
LweI	GCATC	2 cut(s)	214, 303
MaeI	CTAG	4 cut(s)	57, 108, 147, 303
MalI	GATC	1 cut(s)	53
MboI	GATC	1 cut(s)	51
MboII	GAAGA	2 cut(s)	262, 265
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	1 cut(s)	203
MmeI	TCCRAC	1 cut(s)	72
Mph1103I	ATGCAT	1 cut(s)	318
MslI	CAYNNNNRTG	1 cut(s)	191
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	2 cut(s)	221, 288
MvaI	CCWGG	2 cut(s)	221, 288
NdeII	GATC	1 cut(s)	51
NlaIII	CATG	1 cut(s)	176
NlaIV	GGNNCC	1 cut(s)	284
NsiI	ATGCAT	1 cut(s)	318
NspI	RCATGY	1 cut(s)	176
OliI	CACNNNNGTG	1 cut(s)	191
PaeI	GCATGC	1 cut(s)	176
PciSI	GCTCTTC	1 cut(s)	248
PflMI	CCANNNNNTGG	1 cut(s)	74
PkrI	GCNGC	2 cut(s)	99, 198
Ple19I	CGATCG	1 cut(s)	54
Psp124BI	GAGCTC	1 cut(s)	260
Psp6I	CCWGG	2 cut(s)	219, 286
PspGI	CCWGG	2 cut(s)	219, 286
PspN4I	GGNNCC	1 cut(s)	284
PspPI	GGNCC	1 cut(s)	282
PvuI	CGATCG	1 cut(s)	54
RseI	CAYNNNNRTG	1 cut(s)	191
SacI	GAGCTC	1 cut(s)	260
SapI	GCTCTTC	1 cut(s)	248
SatI	GCNGC	2 cut(s)	98, 197
Sau3AI	GATC	1 cut(s)	51
Sau96I	GGNCC	1 cut(s)	282
ScrFI	CCNGG	2 cut(s)	221, 288
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	4 cut(s)	117, 144, 193, 260
SfaNI	GCATC	2 cut(s)	214, 303
SfcI	CTRYAG	1 cut(s)	180
SmiMI	CAYNNNNRTG	1 cut(s)	191
SphI	GCATGC	1 cut(s)	176
Sse9I	AATT	1 cut(s)	203
SsiI	CCGC	1 cut(s)	120
SspMI	CTAG	4 cut(s)	57, 108, 147, 303
SstI	GAGCTC	1 cut(s)	260
StyD4I	CCNGG	2 cut(s)	219, 286
TasI	AATT	1 cut(s)	203
TseI	GCWGC	2 cut(s)	97, 196
Van91I	CCANNNNNTGG	1 cut(s)	74
XceI	RCATGY	1 cut(s)	176
XspI	CTAG	4 cut(s)	57, 108, 147, 303
Zsp2I	ATGCAT	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.