Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0031766

Physical Location & Seq

Genomic Coordinates Forward (+)

36846469 .. 36847727

Gene Structure 1259 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG352500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCAGCCACTTTGTTCTTGGGACCCTTCCAAGAGGCCAACAGCTGCAGAGGCCCTCCAGCACCCTTTCTTCCAGAGTTGCTATTATGTTCCACCATCCCTTCGTCCCAAACTAACAACTGCTAGGACACCACCATTTGCTGGAACAAGGGGAGCGTTGGAGCAGCAATCTGCTAGAAAGGTCTCTGGGACTTTATCCAGTGCAAAGCTCACTAGCAGTTTTCCTTCTCCAAAGTTGCATGCTTCTATAGGTGTGCAGCGCAAATTGGATATGGCTAACCAGGATGCTAAAAAGAATGATAAATACTTGAAGAGCTCTGCCAATCAACAAAAATATCGGCCCCCTGGAAAGAGCAGTCCTAGTGAGTGGATGCATTATGTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009987 GO:0010468 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019222 GO:0019538 GO:0023052 GO:0035556 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

128

Amino Acids

14.24

Weight (kDa)

9.96

Isoelectric Point (pI)

68.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031766)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00035540
rosa_samantha	Rh7BG352500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	140
AfiI	CCNNNNNNNGG	1 cut(s)	140
AgsI	TTSAA	2 cut(s)	310, 383
AjnI	CCWGG	2 cut(s)	279, 343
AluBI	AGCT	3 cut(s)	44, 208, 315
AluI	AGCT	3 cut(s)	44, 208, 315
Alw21I	GWGCWC	1 cut(s)	317
Alw26I	GTCTC	1 cut(s)	187
AoxI	GGCC	3 cut(s)	35, 51, 338
ApeKI	GCWGC	4 cut(s)	4, 44, 163, 256
AspLEI	GCGC	1 cut(s)	261
AspS9I	GGNCC	3 cut(s)	22, 52, 339
AvaII	GGWCC	1 cut(s)	22
BanII	GRGCYC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	317
BbvI	GCAGC	4 cut(s)	16, 31, 175, 268
BccI	CCATC	1 cut(s)	103
BciT130I	CCWGG	2 cut(s)	281, 345
BcoDI	GTCTC	1 cut(s)	187
BfaI	CTAG	4 cut(s)	123, 174, 213, 360
BfmI	CTRYAG	2 cut(s)	45, 246
BisI	GCNGC	4 cut(s)	5, 45, 164, 257
BlsI	GCNGC	4 cut(s)	6, 46, 165, 258
Bme1390I	CCNGG	2 cut(s)	281, 345
Bme18I	GGWCC	1 cut(s)	22
BmgT120I	GGNCC	3 cut(s)	22, 52, 339
BmiI	GGNNCC	3 cut(s)	23, 24, 341
BmrFI	CCNGG	2 cut(s)	281, 345
BmsI	GCATC	2 cut(s)	274, 360
BpmI	CTGGAG	1 cut(s)	41
BsaI	GGTCTC	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	343
Bsc4I	CCNNNNNNNGG	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	281, 345
BseDI	CCNNGG	1 cut(s)	343
BseGI	GGATG	3 cut(s)	95, 289, 375
BseLI	CCNNNNNNNGG	1 cut(s)	140
BseNI	ACTGG	1 cut(s)	198
BseXI	GCAGC	4 cut(s)	16, 31, 175, 268
BsgI	GTGCAG	1 cut(s)	275
BshFI	GGCC	3 cut(s)	37, 53, 340
BsiHKAI	GWGCWC	1 cut(s)	317
BslFI	GGGAC	3 cut(s)	35, 90, 202
BslI	CCNNNNNNNGG	1 cut(s)	140
BsmAI	GTCTC	1 cut(s)	187
BsmFI	GGGAC	3 cut(s)	35, 90, 202
BsnI	GGCC	3 cut(s)	37, 53, 340
Bso31I	GGTCTC	1 cut(s)	187
Bsp1286I	GDGCHC	1 cut(s)	317
BspANI	GGCC	3 cut(s)	37, 53, 340
BspLI	GGNNCC	3 cut(s)	23, 24, 341
BspMAI	CTGCAG	1 cut(s)	49
BspQI	GCTCTTC	1 cut(s)	305
BspTNI	GGTCTC	1 cut(s)	187
BsrI	ACTGG	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	343
Bst2UI	CCWGG	2 cut(s)	281, 345
Bst6I	CTCTTC	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	240
BstF5I	GGATG	3 cut(s)	95, 289, 375
BstHHI	GCGC	1 cut(s)	261
BstMAI	GTCTC	1 cut(s)	187
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	2 cut(s)	281, 345
BstNSI	RCATGY	1 cut(s)	242
BstSCI	CCNGG	2 cut(s)	279, 343
BstSFI	CTRYAG	2 cut(s)	45, 246
BstV1I	GCAGC	4 cut(s)	16, 31, 175, 268
BsuRI	GGCC	3 cut(s)	37, 53, 340
BtsCI	GGATG	3 cut(s)	95, 289, 375
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	240
CfoI	GCGC	1 cut(s)	261
Cfr13I	GGNCC	3 cut(s)	22, 52, 339
CviAII	CATG	1 cut(s)	239
CviJI	RGCY	8 cut(s)	7, 37, 44, 53, 208, 275, 315, 340
CviKI_1	RGCY	8 cut(s)	7, 37, 44, 53, 208, 275, 315, 340
Eam1104I	CTCTTC	1 cut(s)	305
EarI	CTCTTC	1 cut(s)	305
Ecl136II	GAGCTC	1 cut(s)	315
Eco24I	GRGCYC	1 cut(s)	317
Eco31I	GGTCTC	1 cut(s)	187
Eco47I	GGWCC	1 cut(s)	22
Eco53kI	GAGCTC	1 cut(s)	315
EcoICRI	GAGCTC	1 cut(s)	315
EcoO109I	RGGNCCY	2 cut(s)	22, 52
EcoRII	CCWGG	2 cut(s)	279, 343
EcoT22I	ATGCAT	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	317
FaeI	CATG	1 cut(s)	242
FaiI	YATR	5 cut(s)	87, 240, 248, 272, 378
FaqI	GGGAC	3 cut(s)	35, 90, 202
FatI	CATG	1 cut(s)	238
Fnu4HI	GCNGC	4 cut(s)	5, 45, 164, 257
FokI	GGATG	3 cut(s)	82, 296, 382
FriOI	GRGCYC	1 cut(s)	317
Fsp4HI	GCNGC	4 cut(s)	5, 45, 164, 257
FspBI	CTAG	4 cut(s)	123, 174, 213, 360
GlaI	GCGC	1 cut(s)	260
GluI	GCNGC	4 cut(s)	5, 45, 164, 257
GsuI	CTGGAG	1 cut(s)	41
HaeIII	GGCC	3 cut(s)	37, 53, 340
HhaI	GCGC	1 cut(s)	261
Hin1II	CATG	1 cut(s)	242
Hin6I	GCGC	1 cut(s)	259
HinP1I	GCGC	1 cut(s)	259
Hpy188III	TCNNGA	1 cut(s)	73
HpyAV	CCTTC	3 cut(s)	36, 110, 234
HpyCH4V	TGCA	6 cut(s)	4, 47, 203, 238, 256, 373
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
Hsp92II	CATG	1 cut(s)	242
HspAI	GCGC	1 cut(s)	259
KflI	GGGWCCC	1 cut(s)	22
LguI	GCTCTTC	1 cut(s)	305
LmnI	GCTCC	2 cut(s)	152, 160
LpnPI	CCDG	9 cut(s)	71, 86, 126, 171, 211, 266, 293, 330, 357
Lsp1109I	GCAGC	4 cut(s)	16, 31, 175, 268
LweI	GCATC	2 cut(s)	274, 360
MaeI	CTAG	4 cut(s)	123, 174, 213, 360
MboII	GAAGA	2 cut(s)	61, 322
MhlI	GDGCHC	1 cut(s)	317
MluCI	AATT	1 cut(s)	263
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	3 cut(s)	27, 43, 65
Mph1103I	ATGCAT	1 cut(s)	375
MspA1I	CMGCKG	1 cut(s)	44
MspR9I	CCNGG	2 cut(s)	281, 345
MvaI	CCWGG	2 cut(s)	281, 345
MwoI	GCNNNNNNNGC	1 cut(s)	50
NlaIII	CATG	1 cut(s)	242
NlaIV	GGNNCC	3 cut(s)	23, 24, 341
NsiI	ATGCAT	1 cut(s)	375
NspI	RCATGY	1 cut(s)	242
PaeI	GCATGC	1 cut(s)	242
PciSI	GCTCTTC	1 cut(s)	305
PflMI	CCANNNNNTGG	1 cut(s)	140
PkrI	GCNGC	4 cut(s)	6, 46, 165, 258
PpuMI	RGGWCCY	1 cut(s)	22
Psp124BI	GAGCTC	1 cut(s)	317
Psp5II	RGGWCCY	1 cut(s)	22
Psp6I	CCWGG	2 cut(s)	279, 343
PspGI	CCWGG	2 cut(s)	279, 343
PspN4I	GGNNCC	3 cut(s)	23, 24, 341
PspPI	GGNCC	3 cut(s)	22, 52, 339
PspPPI	RGGWCCY	1 cut(s)	22
PstI	CTGCAG	1 cut(s)	49
PvuII	CAGCTG	1 cut(s)	44
SacI	GAGCTC	1 cut(s)	317
SapI	GCTCTTC	1 cut(s)	305
SatI	GCNGC	4 cut(s)	5, 45, 164, 257
Sau96I	GGNCC	3 cut(s)	22, 52, 339
ScrFI	CCNGG	2 cut(s)	281, 345
SduI	GDGCHC	1 cut(s)	317
SetI	ASST	5 cut(s)	46, 183, 210, 253, 317
SfaNI	GCATC	2 cut(s)	274, 360
SfcI	CTRYAG	2 cut(s)	45, 246
SinI	GGWCC	1 cut(s)	22
SphI	GCATGC	1 cut(s)	242
Sse9I	AATT	1 cut(s)	263
SspMI	CTAG	4 cut(s)	123, 174, 213, 360
SstI	GAGCTC	1 cut(s)	317
StyD4I	CCNGG	2 cut(s)	279, 343
TasI	AATT	1 cut(s)	263
TscAI	CASTG	1 cut(s)	205
TseI	GCWGC	4 cut(s)	4, 44, 163, 256
TspRI	CASTG	1 cut(s)	205
Van91I	CCANNNNNTGG	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	22
XceI	RCATGY	1 cut(s)	242
XcmI	CCANNNNNNNNNTGG	1 cut(s)	15
XspI	CTAG	4 cut(s)	123, 174, 213, 360
Zsp2I	ATGCAT	1 cut(s)	375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.