Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0031774

Physical Location & Seq

Genomic Coordinates Forward (+)

55974026 .. 55980957

Gene Structure 6932 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00038500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCTCCTATCACTTGGAATCCTCGGTACGAGAAAGAAGCGAGAAGAGCCAAACCATTACGAACATCGAAGAGGGACTTGTGAGCTTAGGCAACCTCGAAACTTCACTTTCAAAGAGCTTCAAGTTGCCACGGACCATTTTAGCTCCAAGAACATACTGGGTGCTGGAGGTTTTGGGAATGTGTACAAGGGAAAGCTAGGGGATGGGACTATGGTGGCGGTGAAACGACTCAAGGATAGTCACAACGGGAAAGCCGGCACTAGATTGGAACACAAGGAAGAGAATAGCAATTGGACTGCTAGAGGTCTTACGTATCTGCATGAGCAATGTGATCCAAAGATTATACACGGAGACGTGAAGGCTGCAAATGTGCTCCTAGATGACTCTTGCGAGGCAATTGTTGGTGATTTTGGCCTTGCAAAGCTCCTCGACCATGCTGATTCTCATGTGACCACTGCGTACGTGGACCGGGATAATCTTCAAGTTGATCGGGATCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004713 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009987 GO:0010150 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

166

Amino Acids

18.54

Weight (kDa)

7.13

Isoelectric Point (pI)

29.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	99 - 150	4.2e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	99 - 149	3.9e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031774)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00038500 Rroxscaffold_5G00348190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	218
AclWI	GGATC	1 cut(s)	326
AfaI	GTAC	3 cut(s)	28, 185, 461
AgsI	TTSAA	3 cut(s)	112, 122, 482
AjiI	CACGTC	1 cut(s)	355
AluBI	AGCT	5 cut(s)	85, 118, 144, 196, 424
AluI	AGCT	5 cut(s)	85, 118, 144, 196, 424
Alw21I	GWGCWC	1 cut(s)	375
Alw26I	GTCTC	1 cut(s)	345
AlwI	GGATC	1 cut(s)	326
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	1 cut(s)	362
AspS9I	GGNCC	2 cut(s)	133, 466
AsuC2I	CCSGG	1 cut(s)	470
AsuHPI	GGTGA	2 cut(s)	232, 416
AvaII	GGWCC	2 cut(s)	133, 466
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	1 cut(s)	349
BccI	CCATC	1 cut(s)	197
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	4 cut(s)	197, 261, 300, 377
BisI	GCNGC	1 cut(s)	363
BlsI	GCNGC	1 cut(s)	364
Bme1390I	CCNGG	1 cut(s)	470
Bme18I	GGWCC	2 cut(s)	133, 466
BmgBI	CACGTC	1 cut(s)	355
BmgT120I	GGNCC	2 cut(s)	133, 466
BmrFI	CCNGG	1 cut(s)	470
BmrI	ACTGGG	1 cut(s)	167
BmuI	ACTGGG	1 cut(s)	167
BpmI	CTGGAG	1 cut(s)	186
Bpu10I	CCTNAGC	1 cut(s)	86
BpuEI	CTTGAG	1 cut(s)	215
BpuMI	CCSGG	1 cut(s)	470
BsaAI	YACGTR	2 cut(s)	312, 463
BsaBI	GATNNNNATC	1 cut(s)	492
BsaJI	CCNNGG	2 cut(s)	22, 129
Bse118I	RCCGGY	1 cut(s)	254
Bse1I	ACTGG	1 cut(s)	162
Bse3DI	GCAATG	1 cut(s)	332
Bse8I	GATNNNNATC	1 cut(s)	492
BseDI	CCNNGG	2 cut(s)	22, 129
BseGI	GGATG	1 cut(s)	208
BseJI	GATNNNNATC	1 cut(s)	492
BseMI	GCAATG	1 cut(s)	332
BseNI	ACTGG	1 cut(s)	162
BseRI	GAGGAG	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	349
BshFI	GGCC	1 cut(s)	414
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	2 cut(s)	255, 469
BsiWI	CGTACG	1 cut(s)	459
BslFI	GGGAC	2 cut(s)	88, 220
BsmAI	GTCTC	1 cut(s)	345
BsmBI	CGTCTC	1 cut(s)	345
BsmFI	GGGAC	2 cut(s)	88, 220
BsnI	GGCC	1 cut(s)	414
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp1407I	TGTACA	1 cut(s)	183
Bsp143I	GATC	3 cut(s)	331, 487, 493
BspACI	CCGC	1 cut(s)	218
BspANI	GGCC	1 cut(s)	414
BspPI	GGATC	1 cut(s)	326
BspQI	GCTCTTC	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	332
BsrFI	RCCGGY	1 cut(s)	254
BsrGI	TGTACA	1 cut(s)	183
BsrI	ACTGG	1 cut(s)	162
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	22, 129
BssMI	GATC	3 cut(s)	331, 487, 493
Bst6I	CTCTTC	3 cut(s)	39, 64, 273
BstAUI	TGTACA	1 cut(s)	183
BstBAI	YACGTR	2 cut(s)	312, 463
BstC8I	GCNNGC	1 cut(s)	256
BstDEI	CTNAG	1 cut(s)	86
BstDSI	CCRYGG	1 cut(s)	129
BstF5I	GGATG	1 cut(s)	208
BstKTI	GATC	3 cut(s)	334, 490, 496
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	3 cut(s)	331, 487, 493
BstMWI	GCNNNNNNNGC	1 cut(s)	46
BstSCI	CCNGG	1 cut(s)	468
BstSNI	TACGTA	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	349
BstX2I	RGATCY	1 cut(s)	493
BstYI	RGATCY	1 cut(s)	493
BsuRI	GGCC	1 cut(s)	414
BtgI	CCRYGG	1 cut(s)	129
BtrI	CACGTC	1 cut(s)	355
BtsCI	GGATG	1 cut(s)	208
BtsI	GCAGTG	1 cut(s)	453
BtsIMutI	CAGTG	1 cut(s)	453
Cac8I	GCNNGC	1 cut(s)	256
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	133, 466
Csp6I	GTAC	3 cut(s)	27, 184, 460
CviAII	CATG	3 cut(s)	320, 434, 446
CviJI	RGCY	9 cut(s)	49, 85, 118, 144, 196, 254, 362, 414, 424
CviKI_1	RGCY	9 cut(s)	49, 85, 118, 144, 196, 254, 362, 414, 424
CviQI	GTAC	3 cut(s)	27, 184, 460
DdeI	CTNAG	1 cut(s)	86
DpnI	GATC	3 cut(s)	333, 489, 495
DpnII	GATC	3 cut(s)	331, 487, 493
Eam1104I	CTCTTC	3 cut(s)	39, 64, 273
EarI	CTCTTC	3 cut(s)	39, 64, 273
Eco105I	TACGTA	1 cut(s)	312
Eco47I	GGWCC	2 cut(s)	133, 466
Esp3I	CGTCTC	1 cut(s)	345
FaeI	CATG	3 cut(s)	323, 437, 449
FaiI	YATR	6 cut(s)	155, 212, 321, 344, 435, 447
FalI	AAGNNNNNCTT	2 cut(s)	61, 93
FaqI	GGGAC	2 cut(s)	88, 220
FatI	CATG	3 cut(s)	319, 433, 445
Fnu4HI	GCNGC	1 cut(s)	363
FokI	GGATG	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	363
FspBI	CTAG	4 cut(s)	197, 261, 300, 377
GluI	GCNGC	1 cut(s)	363
GsuI	CTGGAG	1 cut(s)	186
HaeIII	GGCC	1 cut(s)	414
HapII	CCGG	2 cut(s)	255, 469
Hin1II	CATG	3 cut(s)	323, 437, 449
HinfI	GANTC	4 cut(s)	18, 228, 383, 440
HpaII	CCGG	2 cut(s)	255, 469
HphI	GGTGA	2 cut(s)	232, 416
Hpy166II	GTNNAC	2 cut(s)	184, 466
Hpy188III	TCNNGA	1 cut(s)	491
Hpy8I	GTNNAC	2 cut(s)	184, 466
HpyAV	CCTTC	1 cut(s)	352
HpyCH4IV	ACGT	3 cut(s)	311, 354, 462
HpyCH4V	TGCA	3 cut(s)	319, 365, 419
HpyF10VI	GCNNNNNNNGC	1 cut(s)	46
HpyF3I	CTNAG	1 cut(s)	86
HpySE526I	ACGT	3 cut(s)	311, 354, 462
Hsp92II	CATG	3 cut(s)	323, 437, 449
KroI	GCCGGC	1 cut(s)	254
KroNI	GCCGGC	1 cut(s)	256
Kzo9I	GATC	3 cut(s)	331, 487, 493
LguI	GCTCTTC	1 cut(s)	39
LmnI	GCTCC	4 cut(s)	9, 149, 378, 429
LpnPI	CCDG	4 cut(s)	143, 150, 268, 482
Lsp1109I	GCAGC	1 cut(s)	349
MaeI	CTAG	4 cut(s)	197, 261, 300, 377
MaeII	ACGT	3 cut(s)	311, 354, 462
MaeIII	GTNAC	2 cut(s)	239, 448
MalI	GATC	3 cut(s)	333, 489, 495
MboI	GATC	3 cut(s)	331, 487, 493
MboII	GAAGA	4 cut(s)	56, 81, 290, 470
MfeI	CAATTG	2 cut(s)	289, 396
MflI	RGATCY	1 cut(s)	493
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	2 cut(s)	289, 396
MlyI	GAGTC	2 cut(s)	222, 377
MnlI	CCTC	7 cut(s)	32, 65, 105, 161, 296, 385, 437
MroNI	GCCGGC	1 cut(s)	254
MspI	CCGG	2 cut(s)	255, 469
MspR9I	CCNGG	1 cut(s)	470
MunI	CAATTG	2 cut(s)	289, 396
MwoI	GCNNNNNNNGC	1 cut(s)	46
NaeI	GCCGGC	1 cut(s)	256
NciI	CCSGG	1 cut(s)	470
NdeII	GATC	3 cut(s)	331, 487, 493
NgoMIV	GCCGGC	1 cut(s)	254
NlaIII	CATG	3 cut(s)	323, 437, 449
NmuCI	GTSAC	2 cut(s)	239, 448
PciSI	GCTCTTC	1 cut(s)	39
PdiI	GCCGGC	1 cut(s)	256
PfeI	GAWTC	2 cut(s)	18, 440
Pfl23II	CGTACG	1 cut(s)	459
PkrI	GCNGC	1 cut(s)	364
PleI	GAGTC	2 cut(s)	222, 377
PpsI	GAGTC	2 cut(s)	222, 377
Ppu21I	YACGTR	2 cut(s)	312, 463
PspLI	CGTACG	1 cut(s)	459
PspPI	GGNCC	2 cut(s)	133, 466
PsuI	RGATCY	1 cut(s)	493
RsaI	GTAC	3 cut(s)	28, 185, 461
RsaNI	GTAC	3 cut(s)	27, 184, 460
SapI	GCTCTTC	1 cut(s)	39
SatI	GCNGC	1 cut(s)	363
Sau3AI	GATC	3 cut(s)	331, 487, 493
Sau96I	GGNCC	2 cut(s)	133, 466
SchI	GAGTC	2 cut(s)	222, 377
ScrFI	CCNGG	1 cut(s)	470
SduI	GDGCHC	1 cut(s)	375
SinI	GGWCC	2 cut(s)	133, 466
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
SnaBI	TACGTA	1 cut(s)	312
Sse9I	AATT	2 cut(s)	289, 396
SsiI	CCGC	1 cut(s)	218
SspMI	CTAG	4 cut(s)	197, 261, 300, 377
StyD4I	CCNGG	1 cut(s)	468
TaiI	ACGT	3 cut(s)	314, 357, 465
TaqI	TCGA	3 cut(s)	67, 97, 429
TasI	AATT	2 cut(s)	289, 396
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	2 cut(s)	18, 440
TscAI	CASTG	1 cut(s)	460
TseFI	GTSAC	2 cut(s)	239, 448
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	2 cut(s)	239, 448
TspGWI	ACGGA	2 cut(s)	146, 363
TspRI	CASTG	1 cut(s)	460
VpaK11BI	GGWCC	2 cut(s)	133, 466
XcmI	CCANNNNNNNNNTGG	2 cut(s)	154, 460
XspI	CTAG	4 cut(s)	197, 261, 300, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.