Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0031774

Physical Location & Seq

Genomic Coordinates Reverse (-)

20148824 .. 20149501

Gene Structure 678 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00348190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGGAAGCTCAAGTCCAACACCACCACTCATCACCTTCGGCTCTTCGTATCCGAAGGCAGCTGCTCTCATCGACTTGGTGGAAGACAACCAGATCGGAAGCTCCATCGTGGTGGCTGATCGACCTGTGGAGATCGATCCGTGCTTGTTGCAGCTCTACATCATCGGTAGCTCGCCGGAGCTCGGTTAATGGCAGCAGTCCAAGTTTGTTGGCGGTGATCGAAGAGCTGTGTAGCGTTGATTGTGACCGTGAGGTGATCGATCTACAGGGGCTGAAAAGCTACGGTGAGGTTGAGGTGTGGACCACCGAGCTCGGCCACAATAATTCCCGGACCGCTTGTTTATTTATCATGGAAGATGAGAGGCGAGAAGAGCCAAACCATTACGAACATCGGTGGCATTCAAGAAGAGACTTGACTTGTGAGCTTAGGCAACCTCGAAACTTCACTTTAAATGAGCTTCAAGTTGCCACAGACCATTTTAGCTCCAAGAACATTCCGGGTGCTGGAGGTTTTGGGAATGTGTACCAGGGAAAGCTAGGGGATGGGACTATGGTGGCTGTAGACACTACTCTTATACTTGTATTTGTGCATTGGCGGGATTGGAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004713 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0007275 GO:0007568 GO:0008150 GO:0008152 GO:0009987 GO:0010150 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0018108 GO:0018193 GO:0018212 GO:0019199 GO:0019538 GO:0023052 GO:0032501 GO:0032502 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0090693 GO:0099402 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_4 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

202

Amino Acids

23.16

Weight (kDa)

6.3

Isoelectric Point (pI)

69.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031774)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00038500 Rroxscaffold_5G00348190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	561
AciI	CCGC	3 cut(s)	212, 333, 595
AclWI	GGATC	1 cut(s)	130
AcoI	YGGCCR	1 cut(s)	313
AfaI	GTAC	1 cut(s)	524
AfiI	CCNNNNNNNGG	2 cut(s)	181, 503
AgsI	TTSAA	2 cut(s)	402, 461
AjnI	CCWGG	1 cut(s)	525
Alw21I	GWGCWC	2 cut(s)	182, 312
Alw26I	GTCTC	1 cut(s)	402
AlwI	GGATC	1 cut(s)	130
AlwNI	CAGNNNCTG	1 cut(s)	271
AoxI	GGCC	1 cut(s)	313
ApeKI	GCWGC	4 cut(s)	58, 61, 150, 192
AspS9I	GGNCC	2 cut(s)	300, 330
AsuC2I	CCSGG	2 cut(s)	328, 498
AsuHPI	GGTGA	4 cut(s)	24, 226, 265, 296
AvaII	GGWCC	2 cut(s)	300, 330
BanII	GRGCYC	2 cut(s)	182, 312
BbsI	GAAGAC	1 cut(s)	89
Bbv12I	GWGCWC	2 cut(s)	182, 312
BbvI	GCAGC	4 cut(s)	48, 70, 162, 204
BccI	CCATC	2 cut(s)	112, 536
BciT130I	CCWGG	1 cut(s)	527
BciVI	GTATCC	1 cut(s)	59
BcnI	CCSGG	2 cut(s)	328, 498
BcoDI	GTCTC	1 cut(s)	402
BfaI	CTAG	1 cut(s)	536
BfmI	CTRYAG	2 cut(s)	263, 558
BfuI	GTATCC	1 cut(s)	59
BisI	GCNGC	4 cut(s)	59, 62, 151, 193
BlsI	GCNGC	4 cut(s)	60, 63, 152, 194
Bme1390I	CCNGG	3 cut(s)	328, 498, 527
Bme18I	GGWCC	2 cut(s)	300, 330
BmgT120I	GGNCC	2 cut(s)	300, 330
BmrFI	CCNGG	3 cut(s)	328, 498, 527
BpiI	GAAGAC	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	525
Bpu10I	CCTNAGC	1 cut(s)	425
BpuMI	CCSGG	2 cut(s)	328, 498
Bsa29I	ATCGAT	2 cut(s)	134, 258
BsaJI	CCNNGG	1 cut(s)	526
Bsc4I	CCNNNNNNNGG	2 cut(s)	181, 503
BseBI	CCWGG	1 cut(s)	527
BseCI	ATCGAT	2 cut(s)	134, 258
BseDI	CCNNGG	1 cut(s)	526
BseGI	GGATG	1 cut(s)	547
BseLI	CCNNNNNNNGG	2 cut(s)	181, 503
BseXI	GCAGC	4 cut(s)	48, 70, 162, 204
BshFI	GGCC	1 cut(s)	315
BshVI	ATCGAT	2 cut(s)	134, 258
BsiHKAI	GWGCWC	2 cut(s)	182, 312
BsiSI	CCGG	3 cut(s)	175, 328, 497
BslFI	GGGAC	1 cut(s)	559
BslI	CCNNNNNNNGG	2 cut(s)	181, 503
BsmAI	GTCTC	1 cut(s)	402
BsmFI	GGGAC	1 cut(s)	559
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	315
Bsp1286I	GDGCHC	2 cut(s)	182, 312
Bsp143I	GATC	7 cut(s)	92, 117, 131, 135, 216, 255, 259
BspACI	CCGC	3 cut(s)	212, 333, 595
BspANI	GGCC	1 cut(s)	315
BspDI	ATCGAT	2 cut(s)	134, 258
BspPI	GGATC	1 cut(s)	130
BspQI	GCTCTTC	3 cut(s)	48, 216, 363
BssECI	CCNNGG	1 cut(s)	526
BssMI	GATC	7 cut(s)	92, 117, 131, 135, 216, 255, 259
Bst2UI	CCWGG	1 cut(s)	527
Bst4CI	ACNGT	2 cut(s)	248, 284
Bst6I	CTCTTC	4 cut(s)	48, 216, 363, 400
BstC8I	GCNNGC	1 cut(s)	172
BstDEI	CTNAG	1 cut(s)	425
BstF5I	GGATG	1 cut(s)	547
BstKTI	GATC	7 cut(s)	95, 120, 134, 138, 219, 258, 262
BstMAI	GTCTC	1 cut(s)	402
BstMBI	GATC	7 cut(s)	92, 117, 131, 135, 216, 255, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNI	CCWGG	1 cut(s)	527
BstSCI	CCNGG	3 cut(s)	326, 496, 525
BstSFI	CTRYAG	2 cut(s)	263, 558
BstV1I	GCAGC	4 cut(s)	48, 70, 162, 204
BstV2I	GAAGAC	1 cut(s)	89
BstXI	CCANNNNNNTGG	1 cut(s)	111
Bsu15I	ATCGAT	2 cut(s)	134, 258
BsuI	GTATCC	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	315
BsuTUI	ATCGAT	2 cut(s)	134, 258
BtsCI	GGATG	1 cut(s)	547
Cac8I	GCNNGC	1 cut(s)	172
CaiI	CAGNNNCTG	1 cut(s)	271
Cfr13I	GGNCC	2 cut(s)	300, 330
ClaI	ATCGAT	2 cut(s)	134, 258
CpoI	CGGWCCG	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	523
CspI	CGGWCCG	1 cut(s)	330
CviAII	CATG	1 cut(s)	349
CviQI	GTAC	1 cut(s)	523
DdeI	CTNAG	1 cut(s)	425
DpnI	GATC	7 cut(s)	94, 119, 133, 137, 218, 257, 261
DpnII	GATC	7 cut(s)	92, 117, 131, 135, 216, 255, 259
DraI	TTTAAA	1 cut(s)	450
EaeI	YGGCCR	1 cut(s)	313
Eam1104I	CTCTTC	4 cut(s)	48, 216, 363, 400
EarI	CTCTTC	4 cut(s)	48, 216, 363, 400
Ecl136II	GAGCTC	2 cut(s)	180, 310
Eco24I	GRGCYC	2 cut(s)	182, 312
Eco47I	GGWCC	2 cut(s)	300, 330
Eco53kI	GAGCTC	2 cut(s)	180, 310
EcoICRI	GAGCTC	2 cut(s)	180, 310
EcoRII	CCWGG	1 cut(s)	525
EcoT38I	GRGCYC	2 cut(s)	182, 312
FaeI	CATG	1 cut(s)	352
FaiI	YATR	3 cut(s)	350, 551, 575
FaqI	GGGAC	1 cut(s)	559
FatI	CATG	1 cut(s)	348
FauI	CCCGC	1 cut(s)	588
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	4 cut(s)	59, 62, 151, 193
FokI	GGATG	1 cut(s)	554
FriOI	GRGCYC	2 cut(s)	182, 312
Fsp4HI	GCNGC	4 cut(s)	59, 62, 151, 193
FspBI	CTAG	1 cut(s)	536
GluI	GCNGC	4 cut(s)	59, 62, 151, 193
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	1 cut(s)	315
HapII	CCGG	3 cut(s)	175, 328, 497
Hin1II	CATG	1 cut(s)	352
HpaII	CCGG	3 cut(s)	175, 328, 497
HphI	GGTGA	4 cut(s)	24, 226, 265, 296
Hpy166II	GTNNAC	3 cut(s)	300, 523, 562
Hpy188I	TCNGA	2 cut(s)	53, 97
Hpy188III	TCNNGA	1 cut(s)	402
Hpy8I	GTNNAC	3 cut(s)	300, 523, 562
HpyAV	CCTTC	2 cut(s)	45, 48
HpyCH4III	ACNGT	2 cut(s)	248, 284
HpyCH4V	TGCA	2 cut(s)	150, 589
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpyF3I	CTNAG	1 cut(s)	425
Hsp92II	CATG	1 cut(s)	352
Kzo9I	GATC	7 cut(s)	92, 117, 131, 135, 216, 255, 259
LguI	GCTCTTC	3 cut(s)	48, 216, 363
LmnI	GCTCC	4 cut(s)	106, 177, 488, 603
LpnPI	CCDG	9 cut(s)	103, 137, 188, 251, 341, 489, 510, 512, 539
Lsp1109I	GCAGC	4 cut(s)	48, 70, 162, 204
MaeI	CTAG	1 cut(s)	536
MaeIII	GTNAC	1 cut(s)	242
MalI	GATC	7 cut(s)	94, 119, 133, 137, 218, 257, 261
MboI	GATC	7 cut(s)	92, 117, 131, 135, 216, 255, 259
MboII	GAAGA	6 cut(s)	35, 94, 233, 365, 380, 417
MhlI	GDGCHC	2 cut(s)	182, 312
MluCI	AATT	1 cut(s)	322
MmeI	TCCRAC	1 cut(s)	40
MnlI	CCTC	6 cut(s)	244, 280, 286, 354, 444, 500
MseI	TTAA	2 cut(s)	186, 449
MslI	CAYNNNNRTG	1 cut(s)	109
MspA1I	CMGCKG	1 cut(s)	61
MspI	CCGG	3 cut(s)	175, 328, 497
MspR9I	CCNGG	3 cut(s)	328, 498, 527
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	1 cut(s)	527
MwoI	GCNNNNNNNGC	1 cut(s)	370
NciI	CCSGG	2 cut(s)	328, 498
NdeII	GATC	7 cut(s)	92, 117, 131, 135, 216, 255, 259
NlaIII	CATG	1 cut(s)	352
NmeAIII	GCCGAG	1 cut(s)	291
NmuCI	GTSAC	1 cut(s)	242
PciSI	GCTCTTC	3 cut(s)	48, 216, 363
PctI	GAATGC	1 cut(s)	397
PfoI	TCCNGGA	1 cut(s)	326
PkrI	GCNGC	4 cut(s)	60, 63, 152, 194
Psp124BI	GAGCTC	2 cut(s)	182, 312
Psp6I	CCWGG	1 cut(s)	525
PspGI	CCWGG	1 cut(s)	525
PspPI	GGNCC	2 cut(s)	300, 330
PstNI	CAGNNNCTG	1 cut(s)	271
PvuII	CAGCTG	1 cut(s)	61
RsaI	GTAC	1 cut(s)	524
RsaNI	GTAC	1 cut(s)	523
RseI	CAYNNNNRTG	1 cut(s)	109
Rsr2I	CGGWCCG	1 cut(s)	330
RsrII	CGGWCCG	1 cut(s)	330
SacI	GAGCTC	2 cut(s)	182, 312
SapI	GCTCTTC	3 cut(s)	48, 216, 363
SaqAI	TTAA	2 cut(s)	186, 449
SatI	GCNGC	4 cut(s)	59, 62, 151, 193
Sau3AI	GATC	7 cut(s)	92, 117, 131, 135, 216, 255, 259
Sau96I	GGNCC	2 cut(s)	300, 330
ScrFI	CCNGG	3 cut(s)	328, 498, 527
SduI	GDGCHC	2 cut(s)	182, 312
SfcI	CTRYAG	2 cut(s)	263, 558
SinI	GGWCC	2 cut(s)	300, 330
SmiMI	CAYNNNNRTG	1 cut(s)	109
SmlI	CTYRAG	1 cut(s)	9
SmoI	CTYRAG	1 cut(s)	9
Sse9I	AATT	1 cut(s)	322
SsiI	CCGC	3 cut(s)	212, 333, 595
SspMI	CTAG	1 cut(s)	536
SstI	GAGCTC	2 cut(s)	182, 312
StyD4I	CCNGG	3 cut(s)	326, 496, 525
TaaI	ACNGT	2 cut(s)	248, 284
TaqI	TCGA	6 cut(s)	71, 120, 134, 219, 258, 436
TasI	AATT	1 cut(s)	322
Tru1I	TTAA	2 cut(s)	186, 449
Tru9I	TTAA	2 cut(s)	186, 449
TseFI	GTSAC	1 cut(s)	242
TseI	GCWGC	4 cut(s)	58, 61, 150, 192
Tsp45I	GTSAC	1 cut(s)	242
TspGWI	ACGGA	1 cut(s)	128
VpaK11BI	GGWCC	2 cut(s)	300, 330
XmiI	GTMKAC	1 cut(s)	561
XspI	CTAG	1 cut(s)	536

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.