Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0031777

Physical Location & Seq

Genomic Coordinates Reverse (-)

58368138 .. 58375183

Gene Structure 7046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00040620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

ATGGACCCATCTCTGTCTTTGATTAATGTGGCAGAGTACGTCTCTGTTCGCTTGCTTCGATCTTCTTCTTCCTCCCACAAGCTACCACAGCAGCTAGGCCTGAAACCCAGAAGACCTAACAGCAGAATTGGGAGACAATGGAGAGCATTTTGGGTGAAAGACTTACTCGAGAGAATCCCACTGCAATCCAGGTTGAATTTGGTCACATTTTACACTTTTTTCGACTCTAGCTCTCCTTTAAACCTTAACTTTGACTTGAAGATATTAAAGATTAACCTGAGCCTTTCCTCCATTGGAAATGTCAAAATTGGACAATCGTTGGATATTGCAAGTAGCCAAGAAATGAAAAGGCTTTCTGGAATAGATGGTTTAGATCTAGATAGTCACGACAAGGAACAGACAGAGAGAACAGAGGAAGCGATTAATGTTGGCGGCAGGTATTACTGTCACCAGCGTGATCAAGTGGTCAGTGCCACTGGGGTGGATGTCAATATGGCATGCCCTCTTTGCCAAGGCTGTTTTATGGAAGAATGTGGTGGTGTCAGCTATAGAGAAAAGATTGAAGGGTTACATTCAAGGTCTTTGATTAGAACGGACAGAAATGACTTGAGTGGTAAACTTTCGGACAATATATGTCAACATCTTTCAAACATTCAAGGGTTCTATTTGTCTCAAAACCATGTTGATTTATCATCGTCGTACAACAAATTCAGTGGAAGCATACCTAGAAATATTGGGAACTTGACGAACATAATGAATATCTATCTTGGCAATAACAATTTGACAAGAGATTGTATTCAATTAGAGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04016 ko04064 ko04620 ko04621 ko04624 ko04626 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 ko05169 map04010 map04016 map04064 map04620 map04621 map04624 map04626 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

270

Amino Acids

30.39

Weight (kDa)

8.14

Isoelectric Point (pI)

57.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031777)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00040620 Rroxscaffold_1G00041730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	426
AciI	CCGC	1 cut(s)	432
AcsI	RAATTY	2 cut(s)	196, 707
AfaI	GTAC	2 cut(s)	38, 701
AgsI	TTSAA	7 cut(s)	196, 259, 563, 576, 648, 656, 800
AjnI	CCWGG	1 cut(s)	188
AleI	CACNNNNGTG	2 cut(s)	453, 479
AluBI	AGCT	4 cut(s)	82, 94, 231, 546
AluI	AGCT	4 cut(s)	82, 94, 231, 546
Alw26I	GTCTC	3 cut(s)	46, 127, 675
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	1 cut(s)	91
ApoI	RAATTY	2 cut(s)	196, 707
AseI	ATTAAT	2 cut(s)	24, 423
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	166, 440
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	4
BbsI	GAAGAC	1 cut(s)	118
BbvI	GCAGC	1 cut(s)	103
BccI	CCATC	2 cut(s)	16, 359
BciT130I	CCWGG	1 cut(s)	190
BclI	TGATCA	1 cut(s)	457
BcoDI	GTCTC	3 cut(s)	46, 127, 675
BfaI	CTAG	4 cut(s)	95, 228, 377, 726
BfmI	CTRYAG	1 cut(s)	547
BfuAI	ACCTGC	1 cut(s)	426
BglII	AGATCT	1 cut(s)	373
BisI	GCNGC	2 cut(s)	92, 433
BlsI	GCNGC	2 cut(s)	93, 434
Bme1390I	CCNGG	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	190
BmrI	ACTGGG	1 cut(s)	486
BmuI	ACTGGG	1 cut(s)	486
BpiI	GAAGAC	1 cut(s)	118
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
Bpu10I	CCTNAGC	1 cut(s)	278
BpuEI	CTTGAG	1 cut(s)	628
BsaJI	CCNNGG	1 cut(s)	511
Bse1I	ACTGG	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	511
BseGI	GGATG	1 cut(s)	490
BseMII	CTCAG	1 cut(s)	269
BseNI	ACTGG	1 cut(s)	481
BseXI	GCAGC	1 cut(s)	103
BshFI	GGCC	1 cut(s)	99
BsiHKCI	CYCGRG	1 cut(s)	167
BsmAI	GTCTC	3 cut(s)	46, 127, 675
BsmBI	CGTCTC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	167
Bsp143I	GATC	3 cut(s)	59, 373, 457
BspACI	CCGC	1 cut(s)	432
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	426
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	1 cut(s)	511
BssMI	GATC	3 cut(s)	59, 373, 457
BssT1I	CCWWGG	1 cut(s)	511
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	1 cut(s)	446
BstC8I	GCNNGC	2 cut(s)	53, 499
BstDEI	CTNAG	1 cut(s)	278
BstF5I	GGATG	1 cut(s)	490
BstKTI	GATC	3 cut(s)	62, 376, 460
BstMAI	GTCTC	3 cut(s)	46, 127, 675
BstMBI	GATC	3 cut(s)	59, 373, 457
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 507
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	501
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	547
BstV1I	GCAGC	1 cut(s)	103
BstV2I	GAAGAC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	373
BstXI	CCANNNNNNTGG	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	373
BsuRI	GGCC	1 cut(s)	99
BtsCI	GGATG	1 cut(s)	490
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	4 cut(s)	179, 474, 475, 718
BveI	ACCTGC	1 cut(s)	426
Cac8I	GCNNGC	2 cut(s)	53, 499
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	37, 700
CspCI	CAANNNNNGTGG	2 cut(s)	694, 729
CviAII	CATG	3 cut(s)	498, 680, 810
CviJI	RGCY	9 cut(s)	82, 94, 99, 231, 282, 336, 352, 516, 546
CviKI_1	RGCY	9 cut(s)	82, 94, 99, 231, 282, 336, 352, 516, 546
CviQI	GTAC	2 cut(s)	37, 700
DdeI	CTNAG	1 cut(s)	278
DpnI	GATC	3 cut(s)	61, 375, 459
DpnII	GATC	3 cut(s)	59, 373, 457
DraI	TTTAAA	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	511
Eco147I	AGGCCT	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	511
ErhI	CCWWGG	1 cut(s)	511
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	3 cut(s)	501, 683, 813
FatI	CATG	3 cut(s)	497, 679, 809
FbaI	TGATCA	1 cut(s)	457
Fnu4HI	GCNGC	2 cut(s)	92, 433
FokI	GGATG	1 cut(s)	497
Fsp4HI	GCNGC	2 cut(s)	92, 433
FspBI	CTAG	4 cut(s)	95, 228, 377, 726
GluI	GCNGC	2 cut(s)	92, 433
HaeIII	GGCC	1 cut(s)	99
Hin1II	CATG	3 cut(s)	501, 683, 813
HincII	GTYRAC	1 cut(s)	638
HindII	GTYRAC	1 cut(s)	638
HinfI	GANTC	2 cut(s)	174, 224
HphI	GGTGA	2 cut(s)	166, 440
Hpy166II	GTNNAC	2 cut(s)	617, 638
Hpy188I	TCNGA	1 cut(s)	625
Hpy188III	TCNNGA	4 cut(s)	169, 357, 377, 386
Hpy8I	GTNNAC	2 cut(s)	617, 638
Hpy99I	CGWCG	1 cut(s)	700
HpyAV	CCTTC	1 cut(s)	557
HpyCH4III	ACNGT	1 cut(s)	446
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	2 cut(s)	184, 329
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 507
HpyF3I	CTNAG	1 cut(s)	278
HpySE526I	ACGT	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	501, 683, 813
Ksp22I	TGATCA	1 cut(s)	457
Kzo9I	GATC	3 cut(s)	59, 373, 457
LpnPI	CCDG	9 cut(s)	113, 121, 175, 202, 290, 342, 421, 462, 464
Lsp1109I	GCAGC	1 cut(s)	103
MaeI	CTAG	4 cut(s)	95, 228, 377, 726
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	4 cut(s)	202, 383, 446, 567
MalI	GATC	3 cut(s)	61, 375, 459
MboI	GATC	3 cut(s)	59, 373, 457
MboII	GAAGA	6 cut(s)	54, 57, 60, 123, 271, 539
MflI	RGATCY	1 cut(s)	373
MluCI	AATT	6 cut(s)	126, 196, 306, 707, 778, 800
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	300
MnlI	CCTC	5 cut(s)	82, 298, 406, 513, 799
MseI	TTAA	6 cut(s)	24, 239, 246, 266, 273, 423
MslI	CAYNNNNRTG	2 cut(s)	453, 479
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	2 cut(s)	88, 507
NdeII	GATC	3 cut(s)	59, 373, 457
NlaIII	CATG	3 cut(s)	501, 683, 813
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	3 cut(s)	202, 383, 446
NspI	RCATGY	1 cut(s)	501
OliI	CACNNNNGTG	2 cut(s)	453, 479
PaeI	GCATGC	1 cut(s)	501
PaeR7I	CTCGAG	1 cut(s)	167
PceI	AGGCCT	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	174
PkrI	GCNGC	2 cut(s)	93, 434
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PshBI	ATTAAT	2 cut(s)	24, 423
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	373
RsaI	GTAC	2 cut(s)	38, 701
RsaNI	GTAC	2 cut(s)	37, 700
RseI	CAYNNNNRTG	2 cut(s)	453, 479
SaqAI	TTAA	6 cut(s)	24, 239, 246, 266, 273, 423
SatI	GCNGC	2 cut(s)	92, 433
Sau3AI	GATC	3 cut(s)	59, 373, 457
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	547
Sfr274I	CTCGAG	1 cut(s)	167
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	167
SmiMI	CAYNNNNRTG	2 cut(s)	453, 479
SmlI	CTYRAG	2 cut(s)	167, 607
SmoI	CTYRAG	2 cut(s)	167, 607
SphI	GCATGC	1 cut(s)	501
Sse9I	AATT	6 cut(s)	126, 196, 306, 707, 778, 800
SseBI	AGGCCT	1 cut(s)	99
SsiI	CCGC	1 cut(s)	432
SspI	AATATT	1 cut(s)	733
SspMI	CTAG	4 cut(s)	95, 228, 377, 726
StuI	AGGCCT	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	511
TaaI	ACNGT	1 cut(s)	446
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	3 cut(s)	58, 168, 222
TasI	AATT	6 cut(s)	126, 196, 306, 707, 778, 800
TauI	GCSGC	1 cut(s)	435
TfiI	GAWTC	1 cut(s)	174
Tru1I	TTAA	6 cut(s)	24, 239, 246, 266, 273, 423
Tru9I	TTAA	6 cut(s)	24, 239, 246, 266, 273, 423
TscAI	CASTG	4 cut(s)	186, 475, 481, 718
TseFI	GTSAC	3 cut(s)	202, 383, 446
TseI	GCWGC	1 cut(s)	91
Tsp45I	GTSAC	3 cut(s)	202, 383, 446
TspDTI	ATGAA	2 cut(s)	359, 770
TspGWI	ACGGA	1 cut(s)	608
TspRI	CASTG	4 cut(s)	186, 475, 481, 718
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	2 cut(s)	24, 423
XapI	RAATTY	2 cut(s)	196, 707
XbaI	TCTAGA	1 cut(s)	376
XceI	RCATGY	1 cut(s)	501
XcmI	CCANNNNNNNNNTGG	1 cut(s)	196
XhoI	CTCGAG	1 cut(s)	167
XspI	CTAG	4 cut(s)	95, 228, 377, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.