Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0031777

Physical Location & Seq

Genomic Coordinates Forward (+)

59669640 .. 59677667

Gene Structure 8028 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00041730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGGACCCATCTCTGTCTTTGATTAATGTGGCAGAGTACGTCTCTGTTCGCTTGCTTCGATCTTCTTCTTCCTCCCACAAGCTACCACAGCAGCTAGGCCTGAAACCCAGAAGACCTAACAGCAGAATTGGGAGACAATGGAGAGCATTTTGGGTGAAAGACTTACTCGAGAGAATCCCACTGCAATCCAGGTTGAATTTGGTCACATTTTACACTTTTTTCGACTCTAGCTCTCCTTTAAACCTTAACTTTGACTGTAGTACTGATGATGTTTTCGAAAAGTTCCGCCTTGCAATCTTGATCTCAAAAGCTGCATTACAATTTAGGAATGGAATAGATGGTTTAGATCTAGATAGTCACGACAAGGAACAGACAGAGAGAACAGAGGAAGCGATTAATGTTGGCGGCAGGTATTACTGTCACCAGCGTGATCAAGTGGTCAGTGCCACTGGGGTGGATGTCAATATGGCATGCCCTCTTTGCCAAGGCTGTTTTATGGAAGAATGTGGTGGTGTCAGGTCATTGCACCTTGCCATGCTGTCGGAGTCAGAGCCTTCTGCAAATGACACTGATGGGAATGGCGCCATGGTAATGTTGGAAAAATTAATAGAATGGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0006355 GO:0006950 GO:0006979 GO:0007154 GO:0007165 GO:0007275 GO:0007568 GO:0008150 GO:0008270 GO:0009719 GO:0009725 GO:0009753 GO:0009755 GO:0009867 GO:0009889 GO:0009987 GO:0010033 GO:0010150 GO:0010468 GO:0010556 GO:0016020 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0042221 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071229 GO:0071310 GO:0071395 GO:0071495 GO:0071944 GO:0080090 GO:0090693 GO:0099402 GO:0140110 GO:1901700 GO:1901701 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-CCCH

Protein Analysis

206

Amino Acids

23.26

Weight (kDa)

5.61

Isoelectric Point (pI)

57.14

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0031777)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00040620 Rroxscaffold_1G00041730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	399
AccB1I	GGYRCC	1 cut(s)	581
AciI	CCGC	2 cut(s)	286, 405
AcsI	RAATTY	1 cut(s)	196
AcyI	GRCGYC	1 cut(s)	582
AfaI	GTAC	2 cut(s)	38, 262
AgsI	TTSAA	1 cut(s)	196
AjnI	CCWGG	1 cut(s)	188
AleI	CACNNNNGTG	2 cut(s)	426, 452
AluBI	AGCT	4 cut(s)	82, 94, 231, 311
AluI	AGCT	4 cut(s)	82, 94, 231, 311
Alw26I	GTCTC	2 cut(s)	46, 127
Ama87I	CYCGRG	1 cut(s)	167
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	2 cut(s)	91, 311
ApoI	RAATTY	1 cut(s)	196
AseI	ATTAAT	3 cut(s)	24, 396, 605
AspLEI	GCGC	1 cut(s)	584
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	166, 413
AsuII	TTCGAA	1 cut(s)	276
AvaI	CYCGRG	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	581
BbsI	GAAGAC	1 cut(s)	118
BbvI	GCAGC	2 cut(s)	103, 298
BccI	CCATC	3 cut(s)	16, 332, 566
BciT130I	CCWGG	1 cut(s)	190
BclI	TGATCA	1 cut(s)	430
BcoDI	GTCTC	2 cut(s)	46, 127
BfaI	CTAG	3 cut(s)	95, 228, 350
BfmI	CTRYAG	1 cut(s)	256
BfoI	RGCGCY	1 cut(s)	585
BfuAI	ACCTGC	1 cut(s)	399
BglII	AGATCT	1 cut(s)	346
BisI	GCNGC	3 cut(s)	92, 312, 406
BlsI	GCNGC	3 cut(s)	93, 313, 407
BmcAI	AGTACT	1 cut(s)	262
Bme1390I	CCNGG	1 cut(s)	190
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	2 cut(s)	6, 583
BmrFI	CCNGG	1 cut(s)	190
BmrI	ACTGGG	1 cut(s)	459
BmuI	ACTGGG	1 cut(s)	459
BpiI	GAAGAC	1 cut(s)	118
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
Bpu14I	TTCGAA	1 cut(s)	276
BsaHI	GRCGYC	1 cut(s)	582
BsaJI	CCNNGG	2 cut(s)	484, 585
Bse1I	ACTGG	1 cut(s)	454
Bse3DI	GCAATG	1 cut(s)	521
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	2 cut(s)	484, 585
BseGI	GGATG	1 cut(s)	463
BseMI	GCAATG	1 cut(s)	521
BseNI	ACTGG	1 cut(s)	454
BseXI	GCAGC	2 cut(s)	103, 298
BshFI	GGCC	1 cut(s)	99
BshNI	GGYRCC	1 cut(s)	581
BsiHKCI	CYCGRG	1 cut(s)	167
BsmAI	GTCTC	2 cut(s)	46, 127
BsmBI	CGTCTC	1 cut(s)	46
BsnI	GGCC	1 cut(s)	99
BsoBI	CYCGRG	1 cut(s)	167
Bsp119I	TTCGAA	1 cut(s)	276
Bsp143I	GATC	4 cut(s)	59, 300, 346, 430
Bsp19I	CCATGG	1 cut(s)	585
BspACI	CCGC	2 cut(s)	286, 405
BspANI	GGCC	1 cut(s)	99
BspLI	GGNNCC	2 cut(s)	6, 583
BspMI	ACCTGC	1 cut(s)	399
BspT104I	TTCGAA	1 cut(s)	276
BspT107I	GGYRCC	1 cut(s)	581
BsrDI	GCAATG	1 cut(s)	521
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	2 cut(s)	484, 585
BssMI	GATC	4 cut(s)	59, 300, 346, 430
BssNI	GRCGYC	1 cut(s)	582
BssT1I	CCWWGG	2 cut(s)	484, 585
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	257, 419
BstACI	GRCGYC	1 cut(s)	582
BstBI	TTCGAA	1 cut(s)	276
BstC8I	GCNNGC	2 cut(s)	53, 472
BstDSI	CCRYGG	1 cut(s)	585
BstF5I	GGATG	1 cut(s)	463
BstH2I	RGCGCY	1 cut(s)	585
BstHHI	GCGC	1 cut(s)	584
BstKTI	GATC	4 cut(s)	62, 303, 349, 433
BstMAI	GTCTC	2 cut(s)	46, 127
BstMBI	GATC	4 cut(s)	59, 300, 346, 430
BstMWI	GCNNNNNNNGC	2 cut(s)	88, 480
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	1 cut(s)	474
BstSCI	CCNGG	1 cut(s)	188
BstSFI	CTRYAG	1 cut(s)	256
BstV1I	GCAGC	2 cut(s)	103, 298
BstV2I	GAAGAC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	346
BstXI	CCANNNNNNTGG	1 cut(s)	454
BstYI	RGATCY	1 cut(s)	346
BsuRI	GGCC	1 cut(s)	99
BtgI	CCRYGG	1 cut(s)	585
BtsCI	GGATG	1 cut(s)	463
BtsI	GCAGTG	1 cut(s)	179
BtsIMutI	CAGTG	4 cut(s)	179, 447, 448, 567
BveI	ACCTGC	1 cut(s)	399
Cac8I	GCNNGC	2 cut(s)	53, 472
CfoI	GCGC	1 cut(s)	584
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	2 cut(s)	37, 261
CviAII	CATG	3 cut(s)	471, 535, 586
CviJI	RGCY	7 cut(s)	82, 94, 99, 231, 311, 489, 553
CviKI_1	RGCY	7 cut(s)	82, 94, 99, 231, 311, 489, 553
CviQI	GTAC	2 cut(s)	37, 261
DinI	GGCGCC	1 cut(s)	583
DpnI	GATC	4 cut(s)	61, 302, 348, 432
DpnII	GATC	4 cut(s)	59, 300, 346, 430
DraI	TTTAAA	1 cut(s)	240
EciI	GGCGGA	1 cut(s)	275
Eco130I	CCWWGG	2 cut(s)	484, 585
Eco147I	AGGCCT	1 cut(s)	99
Eco47I	GGWCC	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	167
EcoRII	CCWGG	1 cut(s)	188
EcoT14I	CCWWGG	2 cut(s)	484, 585
EgeI	GGCGCC	1 cut(s)	583
EheI	GGCGCC	1 cut(s)	583
ErhI	CCWWGG	2 cut(s)	484, 585
Esp3I	CGTCTC	1 cut(s)	46
FaeI	CATG	3 cut(s)	474, 538, 589
FaiI	YATR	5 cut(s)	467, 472, 497, 536, 587
FatI	CATG	3 cut(s)	470, 534, 585
FbaI	TGATCA	1 cut(s)	430
Fnu4HI	GCNGC	3 cut(s)	92, 312, 406
FokI	GGATG	1 cut(s)	470
Fsp4HI	GCNGC	3 cut(s)	92, 312, 406
FspBI	CTAG	3 cut(s)	95, 228, 350
GlaI	GCGC	1 cut(s)	583
GluI	GCNGC	3 cut(s)	92, 312, 406
HaeII	RGCGCY	1 cut(s)	585
HaeIII	GGCC	1 cut(s)	99
HhaI	GCGC	1 cut(s)	584
Hin1I	GRCGYC	1 cut(s)	582
Hin1II	CATG	3 cut(s)	474, 538, 589
Hin6I	GCGC	1 cut(s)	582
HinP1I	GCGC	1 cut(s)	582
HinfI	GANTC	3 cut(s)	174, 224, 545
HphI	GGTGA	2 cut(s)	166, 413
Hpy188I	TCNGA	2 cut(s)	544, 550
Hpy188III	TCNNGA	4 cut(s)	169, 298, 350, 359
HpyAV	CCTTC	1 cut(s)	564
HpyCH4III	ACNGT	2 cut(s)	257, 419
HpyCH4IV	ACGT	1 cut(s)	39
HpyCH4V	TGCA	5 cut(s)	184, 293, 314, 526, 560
HpyF10VI	GCNNNNNNNGC	2 cut(s)	88, 480
HpySE526I	ACGT	1 cut(s)	39
Hsp92I	GRCGYC	1 cut(s)	582
Hsp92II	CATG	3 cut(s)	474, 538, 589
HspAI	GCGC	1 cut(s)	582
KasI	GGCGCC	1 cut(s)	581
Ksp22I	TGATCA	1 cut(s)	430
Kzo9I	GATC	4 cut(s)	59, 300, 346, 430
LpnPI	CCDG	8 cut(s)	113, 121, 175, 202, 394, 435, 437, 502
Lsp1109I	GCAGC	2 cut(s)	103, 298
MaeI	CTAG	3 cut(s)	95, 228, 350
MaeII	ACGT	1 cut(s)	39
MaeIII	GTNAC	3 cut(s)	202, 356, 419
MalI	GATC	4 cut(s)	61, 302, 348, 432
MboI	GATC	4 cut(s)	59, 300, 346, 430
MboII	GAAGA	5 cut(s)	54, 57, 60, 123, 512
MflI	RGATCY	1 cut(s)	346
MluCI	AATT	4 cut(s)	126, 196, 320, 602
Mly113I	GGCGCC	1 cut(s)	582
MlyI	GAGTC	2 cut(s)	218, 554
MmeI	TCCRAC	2 cut(s)	522, 576
MnlI	CCTC	3 cut(s)	82, 379, 486
MseI	TTAA	5 cut(s)	24, 239, 246, 396, 605
MslI	CAYNNNNRTG	3 cut(s)	426, 452, 590
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	2 cut(s)	88, 480
NarI	GGCGCC	1 cut(s)	582
NcoI	CCATGG	1 cut(s)	585
NdeII	GATC	4 cut(s)	59, 300, 346, 430
NlaIII	CATG	3 cut(s)	474, 538, 589
NlaIV	GGNNCC	2 cut(s)	6, 583
NmuCI	GTSAC	3 cut(s)	202, 356, 419
NspI	RCATGY	1 cut(s)	474
NspV	TTCGAA	1 cut(s)	276
OliI	CACNNNNGTG	2 cut(s)	426, 452
PaeI	GCATGC	1 cut(s)	474
PaeR7I	CTCGAG	1 cut(s)	167
PceI	AGGCCT	1 cut(s)	99
PcsI	WCGNNNNNNNCGW	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	174
PkrI	GCNGC	3 cut(s)	93, 313, 407
PleI	GAGTC	2 cut(s)	218, 553
PluTI	GGCGCC	1 cut(s)	585
PpsI	GAGTC	2 cut(s)	218, 553
PshBI	ATTAAT	3 cut(s)	24, 396, 605
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	2 cut(s)	6, 583
PspPI	GGNCC	1 cut(s)	4
PsuI	RGATCY	1 cut(s)	346
RsaI	GTAC	2 cut(s)	38, 262
RsaNI	GTAC	2 cut(s)	37, 261
RseI	CAYNNNNRTG	3 cut(s)	426, 452, 590
SaqAI	TTAA	5 cut(s)	24, 239, 246, 396, 605
SatI	GCNGC	3 cut(s)	92, 312, 406
Sau3AI	GATC	4 cut(s)	59, 300, 346, 430
Sau96I	GGNCC	1 cut(s)	4
ScaI	AGTACT	1 cut(s)	262
SchI	GAGTC	2 cut(s)	218, 554
ScrFI	CCNGG	1 cut(s)	190
SfcI	CTRYAG	1 cut(s)	256
SfoI	GGCGCC	1 cut(s)	583
Sfr274I	CTCGAG	1 cut(s)	167
SfuI	TTCGAA	1 cut(s)	276
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	167
SmiMI	CAYNNNNRTG	3 cut(s)	426, 452, 590
SmlI	CTYRAG	1 cut(s)	167
SmoI	CTYRAG	1 cut(s)	167
SphI	GCATGC	1 cut(s)	474
Sse9I	AATT	4 cut(s)	126, 196, 320, 602
SseBI	AGGCCT	1 cut(s)	99
SsiI	CCGC	2 cut(s)	286, 405
SspDI	GGCGCC	1 cut(s)	581
SspMI	CTAG	3 cut(s)	95, 228, 350
StuI	AGGCCT	1 cut(s)	99
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	2 cut(s)	484, 585
TaaI	ACNGT	2 cut(s)	257, 419
TaiI	ACGT	1 cut(s)	42
TaqI	TCGA	4 cut(s)	58, 168, 222, 276
TasI	AATT	4 cut(s)	126, 196, 320, 602
TatI	WGTACW	1 cut(s)	260
TauI	GCSGC	1 cut(s)	408
TfiI	GAWTC	1 cut(s)	174
Tru1I	TTAA	5 cut(s)	24, 239, 246, 396, 605
Tru9I	TTAA	5 cut(s)	24, 239, 246, 396, 605
TscAI	CASTG	4 cut(s)	186, 448, 454, 574
TseFI	GTSAC	3 cut(s)	202, 356, 419
TseI	GCWGC	2 cut(s)	91, 311
Tsp45I	GTSAC	3 cut(s)	202, 356, 419
TspRI	CASTG	4 cut(s)	186, 448, 454, 574
VpaK11BI	GGWCC	1 cut(s)	4
VspI	ATTAAT	3 cut(s)	24, 396, 605
XapI	RAATTY	1 cut(s)	196
XbaI	TCTAGA	1 cut(s)	349
XceI	RCATGY	1 cut(s)	474
XcmI	CCANNNNNNNNNTGG	2 cut(s)	196, 592
XhoI	CTCGAG	1 cut(s)	167
XspI	CTAG	3 cut(s)	95, 228, 350
ZrmI	AGTACT	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.