Rroxscaffold_1G00044880

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
63903744 .. 63908004
4261 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00044880.1

Sequence Viewer

Length: 177 bp
ATGTTAAGTAATGATGCAGCTCTTCCTTCACCGAGACGACCCGCATTTTTACTGAAGACAATGGGCCCTAGTGGAGACTCATCCAGCAACAAAGGAGGAAAGGAAATGTGTCATTTAGGAAAGGAAACAACAAACTGGACTATATCTAAAGCTTCTTTAAGTGCTCCAAGTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

58

Amino Acids

6.05

Weight (kDa)

9.51

Isoelectric Point (pI)

61.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0031784)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_1G00044880 Rroxscaffold_1G00045000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 42
AcuI CTGAAG 1 cut(s) 74
AluBI AGCT 2 cut(s) 20, 152
AluI AGCT 2 cut(s) 20, 152
Alw21I GWGCWC 1 cut(s) 166
Alw26I GTCTC 2 cut(s) 28, 69
AoxI GGCC 1 cut(s) 64
ApaI GGGCCC 1 cut(s) 68
ApeKI GCWGC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 64, 65
AsuHPI GGTGA 1 cut(s) 21
BaeGI GKGCMC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 68
BbsI GAAGAC 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 166
BbvI GCAGC 1 cut(s) 29
BcoDI GTCTC 2 cut(s) 28, 69
BfaI CTAG 1 cut(s) 69
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
BmgT120I GGNCC 2 cut(s) 64, 65
BmiI GGNNCC 1 cut(s) 66
BmsI GCATC 1 cut(s) 4
BpiI GAAGAC 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 140
BseGI GGATG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 140
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 1 cut(s) 29
BshFI GGCC 1 cut(s) 66
BsiHKAI GWGCWC 1 cut(s) 166
BsmAI GTCTC 2 cut(s) 28, 69
BsmBI CGTCTC 1 cut(s) 28
BsnI GGCC 1 cut(s) 66
Bsp120I GGGCCC 1 cut(s) 64
Bsp1286I GDGCHC 2 cut(s) 68, 166
BspACI CCGC 1 cut(s) 42
BspANI GGCC 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 66
BspQI GCTCTTC 1 cut(s) 27
BsrI ACTGG 1 cut(s) 140
Bst6I CTCTTC 1 cut(s) 27
BstF5I GGATG 1 cut(s) 80
BstMAI GTCTC 2 cut(s) 28, 69
BstSLI GKGCMC 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 29
BstV2I GAAGAC 1 cut(s) 62
BsuRI GGCC 1 cut(s) 66
BtsCI GGATG 1 cut(s) 80
Cfr13I GGNCC 2 cut(s) 64, 65
CviJI RGCY 3 cut(s) 20, 66, 152
CviKI_1 RGCY 3 cut(s) 20, 66, 152
Eam1104I CTCTTC 1 cut(s) 27
EarI CTCTTC 1 cut(s) 27
Eco24I GRGCYC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 74
EcoO109I RGGNCCY 1 cut(s) 65
EcoT38I GRGCYC 1 cut(s) 68
Esp3I CGTCTC 1 cut(s) 28
FaiI YATR 2 cut(s) 143, 175
FauI CCCGC 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 1 cut(s) 67
FriOI GRGCYC 1 cut(s) 68
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 1 cut(s) 69
GluI GCNGC 1 cut(s) 18
HaeIII GGCC 1 cut(s) 66
HindIII AAGCTT 1 cut(s) 150
HinfI GANTC 1 cut(s) 77
HphI GGTGA 1 cut(s) 21
HpyAV CCTTC 1 cut(s) 36
HpyCH4V TGCA 1 cut(s) 17
LguI GCTCTTC 1 cut(s) 27
LmnI GCTCC 1 cut(s) 169
LpnPI CCDG 2 cut(s) 97, 121
Lsp1109I GCAGC 1 cut(s) 29
LweI GCATC 1 cut(s) 4
MaeI CTAG 1 cut(s) 69
MboII GAAGA 2 cut(s) 14, 67
MhlI GDGCHC 2 cut(s) 68, 166
MlyI GAGTC 1 cut(s) 71
MnlI CCTC 1 cut(s) 89
MseI TTAA 2 cut(s) 5, 158
NlaIV GGNNCC 1 cut(s) 66
PciSI GCTCTTC 1 cut(s) 27
PkrI GCNGC 1 cut(s) 19
PleI GAGTC 1 cut(s) 71
PpsI GAGTC 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 66
PspOMI GGGCCC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 64, 65
SapI GCTCTTC 1 cut(s) 27
SaqAI TTAA 2 cut(s) 5, 158
SatI GCNGC 1 cut(s) 18
Sau96I GGNCC 2 cut(s) 64, 65
SchI GAGTC 1 cut(s) 71
SduI GDGCHC 2 cut(s) 68, 166
SetI ASST 2 cut(s) 22, 154
SfaNI GCATC 1 cut(s) 4
SgeI CNNG 5 cut(s) 45, 53, 81, 96, 148
SsiI CCGC 1 cut(s) 42
SspMI CTAG 1 cut(s) 69
Tru1I TTAA 2 cut(s) 5, 158
Tru9I TTAA 2 cut(s) 5, 158
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 1 cut(s) 162
XspI CTAG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.