Rroxscaffold_1G00045000

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0031784
Physical Location & Seq
Forward (+)
64038015 .. 64043326
5312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00045000.1

Sequence Viewer

Length: 357 bp
ATGTCGGCAGTTGTTTCAATGTTAAGCAATGATGCAACTCTTCCTTCACCAAGACGACCCGCATTTTTACTGAAGACAATGAGTCCTAGTGGAGACTCATCCAGCAACAAAGGAGTTTGTTCAGTAAATGATGTCACATATGCCTCTACTAGCAAGCTATTTTCTATGCCACCAAGCATAAACAACACCCTCTTGGGGGGCTCACAAGCCGTGGTGGGACCCAACCGCGACCCGCATCCCGTAGCCCGATGTTCAAGCTATGCCACGGTAGTCGGAAACGGCCAATACCTCATTGGGAAGGAGCGCCCAATACCTCGCGGGAAGCCACCTTCCGGCCTTGTCAAGTTGCCTCCATAA

Protein Analysis

118

Amino Acids

12.28

Weight (kDa)

9.93

Isoelectric Point (pI)

56.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3403 PF11883 9 - 47 6.9e-08 Domain of unknown function (DUF3403)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0031784)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_1G00044880 Rroxscaffold_1G00045000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 228, 318
AciI CCGC 4 cut(s) 60, 226, 233, 318
AcoI YGGCCR 1 cut(s) 280
AcuI CTGAAG 1 cut(s) 92
AfiI CCNNNNNNNGG 3 cut(s) 195, 196, 332
AgsI TTSAA 2 cut(s) 18, 255
AhdI GACNNNNNGTC 1 cut(s) 81
AluBI AGCT 2 cut(s) 157, 258
AluI AGCT 2 cut(s) 157, 258
Alw26I GTCTC 1 cut(s) 87
AoxI GGCC 2 cut(s) 280, 334
AspLEI GCGC 1 cut(s) 306
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 1 cut(s) 39
AvaII GGWCC 1 cut(s) 218
BanII GRGCYC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 80
BceAI ACGGC 2 cut(s) 194, 295
BcoDI GTCTC 1 cut(s) 87
BfaI CTAG 2 cut(s) 87, 150
BfoI RGCGCY 1 cut(s) 307
Bme18I GGWCC 1 cut(s) 218
BmeRI GACNNNNNGTC 1 cut(s) 81
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 2 cut(s) 219, 220
BmsI GCATC 2 cut(s) 22, 244
BpiI GAAGAC 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 210, 264
Bsc4I CCNNNNNNNGG 3 cut(s) 195, 196, 332
Bse3DI GCAATG 1 cut(s) 34
BseDI CCNNGG 2 cut(s) 210, 264
BseGI GGATG 2 cut(s) 98, 235
BseLI CCNNNNNNNGG 3 cut(s) 195, 196, 332
BseMI GCAATG 1 cut(s) 34
Bsh1236I CGCG 2 cut(s) 228, 318
BshFI GGCC 2 cut(s) 282, 336
BsiSI CCGG 1 cut(s) 333
BslFI GGGAC 1 cut(s) 231
BslI CCNNNNNNNGG 3 cut(s) 195, 196, 332
BsmAI GTCTC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 231
BsnI GGCC 2 cut(s) 282, 336
Bsp1286I GDGCHC 1 cut(s) 203
BspACI CCGC 4 cut(s) 60, 226, 233, 318
BspANI GGCC 2 cut(s) 282, 336
BspFNI CGCG 2 cut(s) 228, 318
BspLI GGNNCC 2 cut(s) 219, 220
BsrDI GCAATG 1 cut(s) 34
BssECI CCNNGG 2 cut(s) 210, 264
Bst4CI ACNGT 1 cut(s) 268
Bst6I CTCTTC 1 cut(s) 45
BstC8I GCNNGC 1 cut(s) 155
BstDSI CCRYGG 2 cut(s) 210, 264
BstF5I GGATG 2 cut(s) 98, 235
BstFNI CGCG 2 cut(s) 228, 318
BstH2I RGCGCY 1 cut(s) 307
BstHHI GCGC 1 cut(s) 306
BstMAI GTCTC 1 cut(s) 87
BstUI CGCG 2 cut(s) 228, 318
BstV2I GAAGAC 1 cut(s) 80
BsuRI GGCC 2 cut(s) 282, 336
BtgI CCRYGG 2 cut(s) 210, 264
BtsCI GGATG 2 cut(s) 98, 235
Cac8I GCNNGC 1 cut(s) 155
CfoI GCGC 1 cut(s) 306
Cfr13I GGNCC 1 cut(s) 218
CviJI RGCY 8 cut(s) 157, 201, 209, 245, 258, 282, 325, 336
CviKI_1 RGCY 8 cut(s) 157, 201, 209, 245, 258, 282, 325, 336
DriI GACNNNNNGTC 1 cut(s) 81
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 45
Eam1105I GACNNNNNGTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 45
Eco24I GRGCYC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 218
Eco57I CTGAAG 1 cut(s) 92
EcoO109I RGGNCCY 1 cut(s) 218
EcoT38I GRGCYC 1 cut(s) 203
FaiI YATR 6 cut(s) 139, 141, 167, 179, 261, 355
FaqI GGGAC 1 cut(s) 231
FauI CCCGC 3 cut(s) 67, 240, 311
FauNDI CATATG 1 cut(s) 139
FokI GGATG 2 cut(s) 85, 222
FriOI GRGCYC 1 cut(s) 203
FspBI CTAG 2 cut(s) 87, 150
GlaI GCGC 1 cut(s) 305
HaeII RGCGCY 1 cut(s) 307
HaeIII GGCC 2 cut(s) 282, 336
HapII CCGG 1 cut(s) 333
HhaI GCGC 1 cut(s) 306
Hin6I GCGC 1 cut(s) 304
HinP1I GCGC 1 cut(s) 304
HinfI GANTC 2 cut(s) 82, 95
HpaII CCGG 1 cut(s) 333
HphI GGTGA 1 cut(s) 39
Hpy188I TCNGA 1 cut(s) 275
HpyAV CCTTC 3 cut(s) 54, 292, 339
HpyCH4III ACNGT 1 cut(s) 268
HpyCH4V TGCA 1 cut(s) 35
HspAI GCGC 1 cut(s) 304
KflI GGGWCCC 1 cut(s) 218
LmnI GCTCC 1 cut(s) 301
LpnPI CCDG 2 cut(s) 115, 346
LweI GCATC 2 cut(s) 22, 244
MaeI CTAG 2 cut(s) 87, 150
MaeIII GTNAC 1 cut(s) 133
MboII GAAGA 2 cut(s) 32, 85
MhlI GDGCHC 1 cut(s) 203
MlyI GAGTC 2 cut(s) 89, 91
MmeI TCCRAC 1 cut(s) 253
MnlI CCTC 4 cut(s) 154, 200, 299, 324
MseI TTAA 1 cut(s) 23
MspI CCGG 1 cut(s) 333
MvnI CGCG 2 cut(s) 228, 318
NdeI CATATG 1 cut(s) 139
NlaIV GGNNCC 2 cut(s) 219, 220
NmuCI GTSAC 1 cut(s) 133
PleI GAGTC 2 cut(s) 89, 90
PpsI GAGTC 2 cut(s) 89, 90
PpuMI RGGWCCY 1 cut(s) 218
Psp5II RGGWCCY 1 cut(s) 218
PspN4I GGNNCC 2 cut(s) 219, 220
PspPI GGNCC 1 cut(s) 218
PspPPI RGGWCCY 1 cut(s) 218
SaqAI TTAA 1 cut(s) 23
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 2 cut(s) 89, 91
SduI GDGCHC 1 cut(s) 203
SetI ASST 5 cut(s) 159, 260, 291, 316, 331
SfaNI GCATC 2 cut(s) 22, 244
SinI GGWCC 1 cut(s) 218
SsiI CCGC 4 cut(s) 60, 226, 233, 318
SspMI CTAG 2 cut(s) 87, 150
TaaI ACNGT 1 cut(s) 268
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TseFI GTSAC 1 cut(s) 133
Tsp45I GTSAC 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 218
XcmI CCANNNNNNNNNTGG 1 cut(s) 290
XspI CTAG 2 cut(s) 87, 150
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.