Rroxscaffold_1G00049750

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
70106757 .. 70109886
3130 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_1G00049750.1

Sequence Viewer

Length: 216 bp
ATGGCTGGAAAATGTCTTGGGAAGAAGGCTATTATCTCTGTTAATGGGGATGATGATGGTGACTACGATAATAATGGGTGGACTAATTTGGAGATTGAATGTGACAATGCAGGGGTAGTGTCAGGGACTAATGATAATGATGCTAGCTCTGTGTTGGTGGGATTAATTGATGATATTAGGGCCTATGTTGGCGAGTTTCCGAGTGTCCATGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

71

Amino Acids

7.45

Weight (kDa)

4.05

Isoelectric Point (pI)

27.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021658)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0002741.1_g000019
rosa_roxburghii Rroxscaffold_1G00049750
rosa_samantha Rh2BG190700 Rh5BG453500 Rh5CG475800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AgsI TTSAA 1 cut(s) 98
AluBI AGCT 1 cut(s) 147
AluI AGCT 1 cut(s) 147
AoxI GGCC 1 cut(s) 180
AseI ATTAAT 1 cut(s) 164
AspS9I GGNCC 1 cut(s) 180
AsuHPI GGTGA 1 cut(s) 71
AsuNHI GCTAGC 1 cut(s) 143
BccI CCATC 1 cut(s) 50
BfaI CTAG 1 cut(s) 144
BmgT120I GGNCC 1 cut(s) 180
BmsI GCATC 1 cut(s) 130
BmtI GCTAGC 1 cut(s) 147
BseGI GGATG 1 cut(s) 55
BshFI GGCC 1 cut(s) 182
BslFI GGGAC 1 cut(s) 139
BsmFI GGGAC 1 cut(s) 139
BsnI GGCC 1 cut(s) 182
BspANI GGCC 1 cut(s) 182
BspOI GCTAGC 1 cut(s) 147
BstC8I GCNNGC 1 cut(s) 145
BstF5I GGATG 1 cut(s) 55
BsuRI GGCC 1 cut(s) 182
BtsCI GGATG 1 cut(s) 55
Cac8I GCNNGC 1 cut(s) 145
Cfr13I GGNCC 1 cut(s) 180
CviAII CATG 1 cut(s) 209
CviJI RGCY 4 cut(s) 5, 29, 147, 182
CviKI_1 RGCY 4 cut(s) 5, 29, 147, 182
EcoO109I RGGNCCY 1 cut(s) 180
FaeI CATG 1 cut(s) 212
FaiI YATR 2 cut(s) 186, 210
FaqI GGGAC 1 cut(s) 139
FatI CATG 1 cut(s) 208
FokI GGATG 1 cut(s) 62
FspBI CTAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 182
Hin1II CATG 1 cut(s) 212
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 81
Hpy188I TCNGA 1 cut(s) 201
Hpy8I GTNNAC 1 cut(s) 81
HpyAV CCTTC 1 cut(s) 19
HpyCH4V TGCA 1 cut(s) 110
Hsp92II CATG 1 cut(s) 212
LpnPI CCDG 2 cut(s) 96, 108
LweI GCATC 1 cut(s) 130
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 59, 101
MboII GAAGA 1 cut(s) 34
MluCI AATT 2 cut(s) 85, 165
MseI TTAA 2 cut(s) 42, 164
NheI GCTAGC 1 cut(s) 143
NlaIII CATG 1 cut(s) 212
NmuCI GTSAC 2 cut(s) 59, 101
PshBI ATTAAT 1 cut(s) 164
PspPI GGNCC 1 cut(s) 180
SaqAI TTAA 2 cut(s) 42, 164
Sau96I GGNCC 1 cut(s) 180
SetI ASST 1 cut(s) 149
SfaNI GCATC 1 cut(s) 130
SgeI CNNG 6 cut(s) 18, 29, 123, 135, 156, 205
Sse9I AATT 2 cut(s) 85, 165
SspMI CTAG 1 cut(s) 144
TasI AATT 2 cut(s) 85, 165
Tru1I TTAA 2 cut(s) 42, 164
Tru9I TTAA 2 cut(s) 42, 164
TseFI GTSAC 2 cut(s) 59, 101
Tsp45I GTSAC 2 cut(s) 59, 101
VspI ATTAAT 1 cut(s) 164
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.