Rroxscaffold_1G00052260

Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0031159
Physical Location & Seq
Reverse (-)
72980905 .. 72983002
2098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00052260.1

Sequence Viewer

Length: 342 bp
ATGAATACGGCCCCTATAGTGGCGGCGGCGGCGGGAGTCGTAAGCGGAGCAAGAAGAGGCCCTGCGGTGGATTTTCTTGATCTCGAAGCGGTGGTCGATTCGGATGAGGCAGGAGAGAAAGGATATGGTTATAAAAGATGCTCGTTCCACCGCATCATTAAGGATTTTATGATCCAAGGAGGGATTTCACCGAAGGAGATGGAAGCTGGAAGGATCAGTATCTATGGTTCCAAATTTGATGATGAGAGCTTTGCTTGTATGTTTTCCAAGGGACGGTGCCGGTCATGGCAGCCACACGACCTCTATAGCTGCTGGTCGTTATGTGTCAAACATGACTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pro_isomerase

Protein Analysis

113

Amino Acids

12.46

Weight (kDa)

6.27

Isoelectric Point (pI)

33.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pro_isomerase PF00160 43 - 84 4e-06 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031159)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0001784.1_g000017
rosa_roxburghii Rroxscaffold_1G00052260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 132, 340
AccB1I GGYRCC 1 cut(s) 276
AciI CCGC 8 cut(s) 23, 26, 29, 32, 45, 65, 89, 151
AclWI GGATC 2 cut(s) 166, 221
AcsI RAATTY 1 cut(s) 233
AfiI CCNNNNNNNGG 3 cut(s) 19, 67, 273
AluBI AGCT 3 cut(s) 206, 249, 309
AluI AGCT 3 cut(s) 206, 249, 309
AlwI GGATC 2 cut(s) 166, 221
AoxI GGCC 2 cut(s) 9, 58
ApeKI GCWGC 2 cut(s) 289, 309
ApoI RAATTY 1 cut(s) 233
ArsI GACNNNNNNTTYG 2 cut(s) 78, 110
AspS9I GGNCC 2 cut(s) 10, 59
AsuHPI GGTGA 1 cut(s) 180
BanI GGYRCC 1 cut(s) 276
BbvI GCAGC 2 cut(s) 296, 301
BccI CCATC 1 cut(s) 193
BceAI ACGGC 1 cut(s) 24
BfmI CTRYAG 2 cut(s) 15, 304
BisI GCNGC 5 cut(s) 24, 27, 30, 290, 310
BlsI GCNGC 5 cut(s) 25, 28, 31, 291, 311
BmgT120I GGNCC 2 cut(s) 10, 59
BmiI GGNNCC 3 cut(s) 12, 229, 278
BmsI GCATC 2 cut(s) 128, 162
BsaBI GATNNNNATC 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 175, 267
Bsc4I CCNNNNNNNGG 3 cut(s) 19, 67, 273
Bse118I RCCGGY 1 cut(s) 279
Bse8I GATNNNNATC 1 cut(s) 218
BseDI CCNNGG 2 cut(s) 175, 267
BseGI GGATG 1 cut(s) 109
BseJI GATNNNNATC 1 cut(s) 218
BseLI CCNNNNNNNGG 3 cut(s) 19, 67, 273
BseXI GCAGC 2 cut(s) 296, 301
BshFI GGCC 2 cut(s) 11, 60
BshNI GGYRCC 1 cut(s) 276
BsiSI CCGG 1 cut(s) 280
BslFI GGGAC 1 cut(s) 285
BslI CCNNNNNNNGG 3 cut(s) 19, 67, 273
BsmFI GGGAC 1 cut(s) 285
BsnI GGCC 2 cut(s) 11, 60
Bsp143I GATC 3 cut(s) 79, 171, 213
BspACI CCGC 8 cut(s) 23, 26, 29, 32, 45, 65, 89, 151
BspANI GGCC 2 cut(s) 11, 60
BspLI GGNNCC 3 cut(s) 12, 229, 278
BspPI GGATC 2 cut(s) 166, 221
BspT107I GGYRCC 1 cut(s) 276
BsrFI RCCGGY 1 cut(s) 279
BssAI RCCGGY 1 cut(s) 279
BssECI CCNNGG 2 cut(s) 175, 267
BssMI GATC 3 cut(s) 79, 171, 213
BssT1I CCWWGG 2 cut(s) 175, 267
Bst4CI ACNGT 1 cut(s) 276
Bst6I CTCTTC 1 cut(s) 49
BstF5I GGATG 1 cut(s) 109
BstKTI GATC 3 cut(s) 82, 174, 216
BstMBI GATC 3 cut(s) 79, 171, 213
BstMWI GCNNNNNNNGC 1 cut(s) 29
BstSFI CTRYAG 2 cut(s) 15, 304
BstV1I GCAGC 2 cut(s) 296, 301
BsuRI GGCC 2 cut(s) 11, 60
BtsCI GGATG 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 279
Cfr13I GGNCC 2 cut(s) 10, 59
CviAII CATG 2 cut(s) 285, 332
CviJI RGCY 6 cut(s) 11, 60, 206, 249, 292, 309
CviKI_1 RGCY 6 cut(s) 11, 60, 206, 249, 292, 309
DpnI GATC 3 cut(s) 81, 173, 215
DpnII GATC 3 cut(s) 79, 171, 213
Eam1104I CTCTTC 1 cut(s) 49
EarI CTCTTC 1 cut(s) 49
Eco130I CCWWGG 2 cut(s) 175, 267
EcoO109I RGGNCCY 1 cut(s) 59
EcoT14I CCWWGG 2 cut(s) 175, 267
ErhI CCWWGG 2 cut(s) 175, 267
FaeI CATG 2 cut(s) 288, 335
FaqI GGGAC 1 cut(s) 285
FatI CATG 2 cut(s) 284, 331
FauI CCCGC 1 cut(s) 25
Fnu4HI GCNGC 5 cut(s) 24, 27, 30, 290, 310
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 5 cut(s) 24, 27, 30, 290, 310
GluI GCNGC 5 cut(s) 24, 27, 30, 290, 310
HaeIII GGCC 2 cut(s) 11, 60
HapII CCGG 1 cut(s) 280
Hin1II CATG 2 cut(s) 288, 335
HinfI GANTC 2 cut(s) 36, 98
HpaII CCGG 1 cut(s) 280
HphI GGTGA 1 cut(s) 180
Hpy188I TCNGA 1 cut(s) 103
Hpy188III TCNNGA 2 cut(s) 77, 83
HpyAV CCTTC 2 cut(s) 187, 204
HpyCH4III ACNGT 1 cut(s) 276
HpyF10VI GCNNNNNNNGC 1 cut(s) 29
Hsp92II CATG 2 cut(s) 288, 335
Kzo9I GATC 3 cut(s) 79, 171, 213
LmnI GCTCC 1 cut(s) 47
LpnPI CCDG 5 cut(s) 75, 96, 192, 293, 298
Lsp1109I GCAGC 2 cut(s) 296, 301
LweI GCATC 2 cut(s) 128, 162
MalI GATC 3 cut(s) 81, 173, 215
MboI GATC 3 cut(s) 79, 171, 213
MboII GAAGA 1 cut(s) 66
MluCI AATT 1 cut(s) 233
MlyI GAGTC 1 cut(s) 45
MnlI CCTC 4 cut(s) 50, 100, 173, 311
MseI TTAA 1 cut(s) 159
MspI CCGG 1 cut(s) 280
MwoI GCNNNNNNNGC 1 cut(s) 29
NdeII GATC 3 cut(s) 79, 171, 213
NlaIII CATG 2 cut(s) 288, 335
NlaIV GGNNCC 3 cut(s) 12, 229, 278
PfeI GAWTC 1 cut(s) 98
PkrI GCNGC 5 cut(s) 25, 28, 31, 291, 311
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
PsiI TTATAA 2 cut(s) 132, 340
PspN4I GGNNCC 3 cut(s) 12, 229, 278
PspPI GGNCC 2 cut(s) 10, 59
PsrI GAACNNNNNNTAC 2 cut(s) 211, 243
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 5 cut(s) 24, 27, 30, 290, 310
Sau3AI GATC 3 cut(s) 79, 171, 213
Sau96I GGNCC 2 cut(s) 10, 59
SchI GAGTC 1 cut(s) 45
SetI ASST 4 cut(s) 208, 251, 303, 311
SfaNI GCATC 2 cut(s) 128, 162
SfcI CTRYAG 2 cut(s) 15, 304
Sse9I AATT 1 cut(s) 233
SsiI CCGC 8 cut(s) 23, 26, 29, 32, 45, 65, 89, 151
StyI CCWWGG 2 cut(s) 175, 267
TaaI ACNGT 1 cut(s) 276
TaqI TCGA 2 cut(s) 84, 96
TasI AATT 1 cut(s) 233
TauI GCSGC 3 cut(s) 26, 29, 32
TfiI GAWTC 1 cut(s) 98
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
TseI GCWGC 2 cut(s) 289, 309
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.