Rroxscaffold_1G00054510

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0025738
Physical Location & Seq
Forward (+)
75886122 .. 75891317
5196 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054510.1

Sequence Viewer

Length: 570 bp
ATGATTGAGAGAATTCAACCATATTCTAATTCACCAGAAGAAAAAAGTAAACGGTCATCTGCAGGCCAGCCAACAAAACATCAGAAAAATGATAGAAGTGGTCACGACTACATCCGGCGTACTCGGCAGAGGAGCAGCAAGTGGGGTGCCCGTAACATTTTGGGGGCCCAAAGGGTGGCTCAAATCGGTTTGGGTGCCCAAATCATTTTGGAAGCCCAAAAGGTCGTGGTGGCCCAAATCAATTTTAAGGCTATAATCGATGGACTTGGAGTGTTTTTCTGTTGGAATGGGGCGCTTTGGCGACCCCGCGATTTGGGCCTCGTTTCTTCGTGGTTTCGTATTTGGGATCCCGGAGGAGCATTACCCCTGCACCGGAGGCTCGAGAAATTGGCAAAGGAAAGCTTTAGCATCCGTGATCACATTTCTTTCGTACGTAATGCTGGTTTTGTAGGAACTGGTAAAGACATGCTTTTATTGGTCAGCATAGGTATCACATCTAACATCGTGGGTCGACTAGCTGCATTTTCCTCCACACAAAGCAGACCAACATGGATGCACCTCAACAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase_Tyr

Protein Analysis

189

Amino Acids

21.23

Weight (kDa)

11.08

Isoelectric Point (pI)

53.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0025738)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_1G00054510
rosa_samantha Rh5CG186900 Rh5CG521300

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 146, 194
AccB7I CCANNNNNTGG 1 cut(s) 175
AccI GTMKAC 1 cut(s) 511
AccII CGCG 1 cut(s) 309
AciI CCGC 1 cut(s) 307
AclWI GGATC 2 cut(s) 341, 354
AcsI RAATTY 1 cut(s) 12
AfaI GTAC 2 cut(s) 121, 432
AfiI CCNNNNNNNGG 3 cut(s) 175, 313, 372
AgsI TTSAA 1 cut(s) 17
AluBI AGCT 2 cut(s) 402, 518
AluI AGCT 2 cut(s) 402, 518
AlwI GGATC 2 cut(s) 341, 354
Ama87I CYCGRG 1 cut(s) 380
AoxI GGCC 4 cut(s) 64, 165, 231, 316
ApaI GGGCCC 1 cut(s) 169
ApeKI GCWGC 2 cut(s) 135, 518
ApoI RAATTY 1 cut(s) 12
AspLEI GCGC 1 cut(s) 295
AspS9I GGNCC 4 cut(s) 165, 166, 232, 316
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 1 cut(s) 24
AvaI CYCGRG 1 cut(s) 380
BaeGI GKGCMC 3 cut(s) 151, 169, 199
BamHI GGATCC 1 cut(s) 346
BanI GGYRCC 2 cut(s) 146, 194
BanII GRGCYC 1 cut(s) 169
BbvI GCAGC 2 cut(s) 147, 505
BccI CCATC 1 cut(s) 254
BclI TGATCA 1 cut(s) 415
BcnI CCSGG 1 cut(s) 351
BfaI CTAG 1 cut(s) 515
BfmI CTRYAG 1 cut(s) 60
BfoI RGCGCY 1 cut(s) 296
BisI GCNGC 2 cut(s) 136, 519
BlsI GCNGC 2 cut(s) 137, 520
Bme1390I CCNGG 1 cut(s) 351
BmeT110I CYCGRG 1 cut(s) 380
BmgT120I GGNCC 4 cut(s) 165, 166, 232, 316
BmiI GGNNCC 5 cut(s) 148, 166, 167, 196, 348
BmrFI CCNGG 1 cut(s) 351
BmsI GCATC 2 cut(s) 417, 543
BpuMI CCSGG 1 cut(s) 351
Bsa29I ATCGAT 1 cut(s) 258
BsaAI YACGTR 1 cut(s) 434
BsaWI WCCGGW 1 cut(s) 372
Bsc4I CCNNNNNNNGG 3 cut(s) 175, 313, 372
Bse1I ACTGG 1 cut(s) 460
BseCI ATCGAT 1 cut(s) 258
BseGI GGATG 3 cut(s) 111, 408, 558
BseLI CCNNNNNNNGG 3 cut(s) 175, 313, 372
BseNI ACTGG 1 cut(s) 460
BseRI GAGGAG 2 cut(s) 145, 369
BseSI GKGCMC 3 cut(s) 151, 169, 199
BseXI GCAGC 2 cut(s) 147, 505
BsgI GTGCAG 1 cut(s) 353
Bsh1236I CGCG 1 cut(s) 309
BshFI GGCC 4 cut(s) 66, 167, 233, 318
BshNI GGYRCC 2 cut(s) 146, 194
BshVI ATCGAT 1 cut(s) 258
BsiHKCI CYCGRG 1 cut(s) 380
BsiSI CCGG 3 cut(s) 115, 351, 373
BsiWI CGTACG 1 cut(s) 430
BslI CCNNNNNNNGG 3 cut(s) 175, 313, 372
BsnI GGCC 4 cut(s) 66, 167, 233, 318
BsoBI CYCGRG 1 cut(s) 380
Bsp120I GGGCCC 1 cut(s) 165
Bsp1286I GDGCHC 3 cut(s) 151, 169, 199
Bsp143I GATC 2 cut(s) 346, 415
BspACI CCGC 1 cut(s) 307
BspANI GGCC 4 cut(s) 66, 167, 233, 318
BspDI ATCGAT 1 cut(s) 258
BspFNI CGCG 1 cut(s) 309
BspLI GGNNCC 5 cut(s) 148, 166, 167, 196, 348
BspMAI CTGCAG 1 cut(s) 64
BspPI GGATC 2 cut(s) 341, 354
BspT107I GGYRCC 2 cut(s) 146, 194
BsrI ACTGG 1 cut(s) 460
BssMI GATC 2 cut(s) 346, 415
Bst4CI ACNGT 1 cut(s) 54
BstBAI YACGTR 1 cut(s) 434
BstC8I GCNNGC 2 cut(s) 64, 68
BstF5I GGATG 3 cut(s) 111, 408, 558
BstFNI CGCG 1 cut(s) 309
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 2 cut(s) 349, 418
BstMBI GATC 2 cut(s) 346, 415
BstMWI GCNNNNNNNGC 3 cut(s) 124, 315, 376
BstNSI RCATGY 1 cut(s) 469
BstSCI CCNGG 1 cut(s) 349
BstSFI CTRYAG 1 cut(s) 60
BstSLI GKGCMC 3 cut(s) 151, 169, 199
BstSNI TACGTA 1 cut(s) 434
BstUI CGCG 1 cut(s) 309
BstV1I GCAGC 2 cut(s) 147, 505
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
Bsu15I ATCGAT 1 cut(s) 258
BsuRI GGCC 4 cut(s) 66, 167, 233, 318
BsuTUI ATCGAT 1 cut(s) 258
BtsCI GGATG 3 cut(s) 111, 408, 558
Cac8I GCNNGC 2 cut(s) 64, 68
CfoI GCGC 1 cut(s) 295
Cfr13I GGNCC 4 cut(s) 165, 166, 232, 316
ClaI ATCGAT 1 cut(s) 258
Csp6I GTAC 2 cut(s) 120, 431
CviAII CATG 2 cut(s) 466, 549
CviQI GTAC 2 cut(s) 120, 431
DpnI GATC 2 cut(s) 348, 417
DpnII GATC 2 cut(s) 346, 415
Eco105I TACGTA 1 cut(s) 434
Eco24I GRGCYC 1 cut(s) 169
Eco88I CYCGRG 1 cut(s) 380
EcoO109I RGGNCCY 1 cut(s) 165
EcoRI GAATTC 1 cut(s) 12
EcoT38I GRGCYC 1 cut(s) 169
FaeI CATG 2 cut(s) 469, 552
FaiI YATR 5 cut(s) 22, 254, 467, 485, 550
FalI AAGNNNNNCTT 4 cut(s) 386, 418, 453, 485
FatI CATG 2 cut(s) 465, 548
FauI CCCGC 1 cut(s) 314
FbaI TGATCA 1 cut(s) 415
FblI GTMKAC 1 cut(s) 511
Fnu4HI GCNGC 2 cut(s) 136, 519
FokI GGATG 3 cut(s) 98, 395, 565
FriOI GRGCYC 1 cut(s) 169
Fsp4HI GCNGC 2 cut(s) 136, 519
FspBI CTAG 1 cut(s) 515
GlaI GCGC 1 cut(s) 294
GluI GCNGC 2 cut(s) 136, 519
HaeII RGCGCY 1 cut(s) 296
HaeIII GGCC 4 cut(s) 66, 167, 233, 318
HapII CCGG 3 cut(s) 115, 351, 373
HhaI GCGC 1 cut(s) 295
Hin1II CATG 2 cut(s) 469, 552
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HincII GTYRAC 1 cut(s) 512
HindII GTYRAC 1 cut(s) 512
HindIII AAGCTT 1 cut(s) 400
HpaII CCGG 3 cut(s) 115, 351, 373
HphI GGTGA 1 cut(s) 24
Hpy166II GTNNAC 2 cut(s) 50, 512
Hpy188I TCNGA 1 cut(s) 84
Hpy188III TCNNGA 2 cut(s) 104, 382
Hpy8I GTNNAC 2 cut(s) 50, 512
HpyCH4III ACNGT 1 cut(s) 54
HpyCH4IV ACGT 1 cut(s) 433
HpyCH4V TGCA 4 cut(s) 62, 370, 521, 556
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 315, 376
HpySE526I ACGT 1 cut(s) 433
Hsp92II CATG 2 cut(s) 469, 552
HspAI GCGC 1 cut(s) 293
Ksp22I TGATCA 1 cut(s) 415
Kzo9I GATC 2 cut(s) 346, 415
LmnI GCTCC 2 cut(s) 132, 356
LpnPI CCDG 9 cut(s) 48, 48, 80, 128, 364, 380, 386, 426, 441
Lsp1109I GCAGC 2 cut(s) 147, 505
LweI GCATC 2 cut(s) 417, 543
MaeI CTAG 1 cut(s) 515
MaeII ACGT 1 cut(s) 433
MaeIII GTNAC 2 cut(s) 101, 152
MalI GATC 2 cut(s) 348, 417
MboI GATC 2 cut(s) 346, 415
MboII GAAGA 2 cut(s) 50, 318
MfeI CAATTG 1 cut(s) 565
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 3 cut(s) 151, 169, 199
MluCI AATT 5 cut(s) 12, 28, 241, 386, 565
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 6 cut(s) 123, 329, 347, 369, 538, 569
MseI TTAA 1 cut(s) 246
MspI CCGG 3 cut(s) 115, 351, 373
MspR9I CCNGG 1 cut(s) 351
MunI CAATTG 1 cut(s) 565
MvnI CGCG 1 cut(s) 309
MwoI GCNNNNNNNGC 3 cut(s) 124, 315, 376
NciI CCSGG 1 cut(s) 351
NdeII GATC 2 cut(s) 346, 415
NlaIII CATG 2 cut(s) 469, 552
NlaIV GGNNCC 5 cut(s) 148, 166, 167, 196, 348
NmeAIII GCCGAG 1 cut(s) 103
NmuCI GTSAC 1 cut(s) 101
NspI RCATGY 1 cut(s) 469
PaeR7I CTCGAG 1 cut(s) 380
Pfl23II CGTACG 1 cut(s) 430
PflMI CCANNNNNTGG 1 cut(s) 175
PfoI TCCNGGA 1 cut(s) 349
PkrI GCNGC 2 cut(s) 137, 520
Ppu21I YACGTR 1 cut(s) 434
PspLI CGTACG 1 cut(s) 430
PspN4I GGNNCC 5 cut(s) 148, 166, 167, 196, 348
PspOMI GGGCCC 1 cut(s) 165
PspPI GGNCC 4 cut(s) 165, 166, 232, 316
PstI CTGCAG 1 cut(s) 64
PsuI RGATCY 1 cut(s) 346
RsaI GTAC 2 cut(s) 121, 432
RsaNI GTAC 2 cut(s) 120, 431
SalI GTCGAC 1 cut(s) 510
SaqAI TTAA 1 cut(s) 246
SatI GCNGC 2 cut(s) 136, 519
Sau3AI GATC 2 cut(s) 346, 415
Sau96I GGNCC 4 cut(s) 165, 166, 232, 316
ScrFI CCNGG 1 cut(s) 351
SduI GDGCHC 3 cut(s) 151, 169, 199
SetI ASST 6 cut(s) 225, 404, 436, 490, 520, 561
SfaNI GCATC 2 cut(s) 417, 543
SfcI CTRYAG 1 cut(s) 60
Sfr274I CTCGAG 1 cut(s) 380
SlaI CTCGAG 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
SnaBI TACGTA 1 cut(s) 434
Sse9I AATT 5 cut(s) 12, 28, 241, 386, 565
SsiI CCGC 1 cut(s) 307
SspMI CTAG 1 cut(s) 515
StyD4I CCNGG 1 cut(s) 349
TaaI ACNGT 1 cut(s) 54
TaiI ACGT 1 cut(s) 436
TaqI TCGA 3 cut(s) 258, 381, 511
TasI AATT 5 cut(s) 12, 28, 241, 386, 565
Tru1I TTAA 1 cut(s) 246
Tru9I TTAA 1 cut(s) 246
TseFI GTSAC 1 cut(s) 101
TseI GCWGC 2 cut(s) 135, 518
Tsp45I GTSAC 1 cut(s) 101
TspGWI ACGGA 1 cut(s) 401
Van91I CCANNNNNTGG 1 cut(s) 175
XapI RAATTY 1 cut(s) 12
XceI RCATGY 1 cut(s) 469
XhoI CTCGAG 1 cut(s) 380
XmiI GTMKAC 1 cut(s) 511
XspI CTAG 1 cut(s) 515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.