Rroxscaffold_1G00054960

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
76361590 .. 76366259
4670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054960.1

Sequence Viewer

Length: 357 bp
ATGGCGGCTGGATGTCGATCTCCCTTTTCTATTGTGCGGCCGAATAGAGACAGAGGACCGAACACTGTTTCAAAAAGGGTACTTGCTGGGTTTCTTTCAAAGAATATCTCCAAACTCAATCTAGATCTTTGTATGTCACTGATTATGGGGTTGGGTGATGCAGGGGTTGCTGAGATTGGTATGGATTTTGGAGCTTCTGGATTTTCAATCAGAATGAACACACTATCGAAAAAATTTGAAGCTAGAACAGGCGAAGGAAGGTATTGCCTGCTACTGTTGCTGTGCGTTTGTTCTTCTTTTAGGCTGTTTGTACGAGCTATAGATTGCCCTCTGGGTTGCCAAATTGATTGTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

12.77

Weight (kDa)

8.9

Isoelectric Point (pI)

33.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0029814)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0136611
rosa_roxburghii Rroxscaffold_1G00054960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 5, 37
AcoI YGGCCR 1 cut(s) 38
AcsI RAATTY 1 cut(s) 233
AfaI GTAC 2 cut(s) 81, 312
AgsI TTSAA 4 cut(s) 72, 99, 207, 239
AluBI AGCT 3 cut(s) 194, 242, 317
AluI AGCT 3 cut(s) 194, 242, 317
Alw26I GTCTC 1 cut(s) 42
AoxI GGCC 1 cut(s) 38
ApoI RAATTY 1 cut(s) 233
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 167
AvaII GGWCC 1 cut(s) 56
BcoDI GTCTC 1 cut(s) 42
BfaI CTAG 2 cut(s) 122, 243
BfmI CTRYAG 1 cut(s) 318
BglII AGATCT 1 cut(s) 124
BisI GCNGC 2 cut(s) 6, 38
BlsI GCNGC 2 cut(s) 7, 39
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BmsI GCATC 1 cut(s) 148
BsaBI GATNNNNATC 1 cut(s) 16
Bse8I GATNNNNATC 1 cut(s) 16
BseGI GGATG 1 cut(s) 17
BseJI GATNNNNATC 1 cut(s) 16
BseMII CTCAG 1 cut(s) 162
BseX3I CGGCCG 1 cut(s) 38
BseYI CCCAGC 1 cut(s) 86
Bsh1285I CGRYCG 1 cut(s) 41
BshFI GGCC 1 cut(s) 40
BsiEI CGRYCG 1 cut(s) 41
BsmAI GTCTC 1 cut(s) 42
BsnI GGCC 1 cut(s) 40
Bsp143I GATC 2 cut(s) 17, 124
BspACI CCGC 2 cut(s) 5, 37
BspANI GGCC 1 cut(s) 40
BspCNI CTCAG 1 cut(s) 163
BssMI GATC 2 cut(s) 17, 124
Bst4CI ACNGT 2 cut(s) 67, 276
BstAPI GCANNNNNTGC 1 cut(s) 167
BstC8I GCNNGC 1 cut(s) 269
BstDEI CTNAG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 17
BstKTI GATC 2 cut(s) 20, 127
BstMAI GTCTC 1 cut(s) 42
BstMBI GATC 2 cut(s) 17, 124
BstMCI CGRYCG 1 cut(s) 41
BstMWI GCNNNNNNNGC 2 cut(s) 167, 277
BstSFI CTRYAG 1 cut(s) 318
BstX2I RGATCY 1 cut(s) 124
BstYI RGATCY 1 cut(s) 124
BstZI CGGCCG 1 cut(s) 38
BsuRI GGCC 1 cut(s) 40
BtsCI GGATG 1 cut(s) 17
BtsIMutI CAGTG 2 cut(s) 63, 137
Cac8I GCNNGC 1 cut(s) 269
Cfr13I GGNCC 1 cut(s) 56
Csp6I GTAC 2 cut(s) 80, 311
CviJI RGCY 6 cut(s) 8, 40, 194, 242, 304, 317
CviKI_1 RGCY 6 cut(s) 8, 40, 194, 242, 304, 317
CviQI GTAC 2 cut(s) 80, 311
DdeI CTNAG 1 cut(s) 171
DpnI GATC 2 cut(s) 19, 126
DpnII GATC 2 cut(s) 17, 124
EaeI YGGCCR 1 cut(s) 38
EagI CGGCCG 1 cut(s) 38
EclXI CGGCCG 1 cut(s) 38
Eco47I GGWCC 1 cut(s) 56
Eco52I CGGCCG 1 cut(s) 38
FaiI YATR 4 cut(s) 134, 146, 182, 320
Fnu4HI GCNGC 2 cut(s) 6, 38
FokI GGATG 1 cut(s) 24
Fsp4HI GCNGC 2 cut(s) 6, 38
FspBI CTAG 2 cut(s) 122, 243
GluI GCNGC 2 cut(s) 6, 38
GsaI CCCAGC 1 cut(s) 90
HaeIII GGCC 1 cut(s) 40
HphI GGTGA 1 cut(s) 167
Hpy188I TCNGA 1 cut(s) 212
Hpy188III TCNNGA 2 cut(s) 122, 198
HpyAV CCTTC 2 cut(s) 248, 252
HpyCH4III ACNGT 2 cut(s) 67, 276
HpyCH4V TGCA 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 2 cut(s) 167, 277
HpyF3I CTNAG 1 cut(s) 171
Kzo9I GATC 2 cut(s) 17, 124
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 6 cut(s) 72, 147, 183, 234, 281, 317
LweI GCATC 1 cut(s) 148
MaeI CTAG 2 cut(s) 122, 243
MaeIII GTNAC 1 cut(s) 135
MalI GATC 2 cut(s) 19, 126
MboI GATC 2 cut(s) 17, 124
MboII GAAGA 1 cut(s) 285
MflI RGATCY 1 cut(s) 124
MluCI AATT 2 cut(s) 233, 342
MnlI CCTC 2 cut(s) 47, 339
MseI TTAA 1 cut(s) 355
MwoI GCNNNNNNNGC 2 cut(s) 167, 277
NdeII GATC 2 cut(s) 17, 124
NmuCI GTSAC 1 cut(s) 135
PkrI GCNGC 2 cut(s) 7, 39
PspFI CCCAGC 1 cut(s) 86
PspPI GGNCC 1 cut(s) 56
PsuI RGATCY 1 cut(s) 124
RsaI GTAC 2 cut(s) 81, 312
RsaNI GTAC 2 cut(s) 80, 311
SaqAI TTAA 1 cut(s) 355
SatI GCNGC 2 cut(s) 6, 38
Sau3AI GATC 2 cut(s) 17, 124
Sau96I GGNCC 1 cut(s) 56
SetI ASST 4 cut(s) 196, 244, 263, 319
SfaNI GCATC 1 cut(s) 148
SfcI CTRYAG 1 cut(s) 318
SinI GGWCC 1 cut(s) 56
Sse9I AATT 2 cut(s) 233, 342
SsiI CCGC 2 cut(s) 5, 37
SspMI CTAG 2 cut(s) 122, 243
TaaI ACNGT 2 cut(s) 67, 276
TaqI TCGA 2 cut(s) 16, 227
TaqII GACCGA 1 cut(s) 73
TasI AATT 2 cut(s) 233, 342
TauI GCSGC 2 cut(s) 8, 40
Tru1I TTAA 1 cut(s) 355
Tru9I TTAA 1 cut(s) 355
TscAI CASTG 2 cut(s) 70, 144
TseFI GTSAC 1 cut(s) 135
Tsp45I GTSAC 1 cut(s) 135
TspDTI ATGAA 1 cut(s) 230
TspRI CASTG 2 cut(s) 70, 144
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 1 cut(s) 233
XbaI TCTAGA 1 cut(s) 121
XspI CTAG 2 cut(s) 122, 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.