Rroxscaffold_2G00077160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0024644
Physical Location & Seq
Forward (+)
803327 .. 804194
868 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00077160.1

Sequence Viewer

Length: 261 bp
ATGGACGCCATAGATTCAGTGTTTGAGCCCCCTGAGAGAATTCTCCTAGGACAGGGTTCGCCTGGTCAAAAGCTGCCACAAACCCGACCGGAAAGAATTCACAAAGGTGGCGGTACCTACGGCCATCGGGTTTGTGGTGATGGGATTCGTTGGCTTCTTGGTGAAGCTCATCTTCATTCCGATCAACAACACCATCGTCGGAGCTGCTTAGGTCATTTGGCACTTGTAAGAAAGATGGAGCTATCAAGGAACACTAGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.7

Weight (kDa)

9.68

Isoelectric Point (pI)

69.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0024644)

Species Orthologous Gene IDs
pyrus_communis pycom06g02290
rosa_roxburghii Rroxscaffold_2G00077160
rosa_rugosa Rorug02G0587200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 113
AccB1I GGYRCC 1 cut(s) 113
AciI CCGC 1 cut(s) 111
AcoI YGGCCR 1 cut(s) 121
AcsI RAATTY 2 cut(s) 39, 96
AcyI GRCGYC 1 cut(s) 6
AfaI GTAC 1 cut(s) 115
AfiI CCNNNNNNNGG 1 cut(s) 52
AjnI CCWGG 1 cut(s) 61
AleI CACNNNNGTG 1 cut(s) 105
AluBI AGCT 4 cut(s) 73, 167, 204, 241
AluI AGCT 4 cut(s) 73, 167, 204, 241
AoxI GGCC 1 cut(s) 121
ApeKI GCWGC 2 cut(s) 73, 204
ApoI RAATTY 2 cut(s) 39, 96
Asp700I GAANNNNTTC 1 cut(s) 96
Asp718I GGTACC 1 cut(s) 113
AspA2I CCTAGG 1 cut(s) 46
AsuHPI GGTGA 2 cut(s) 149, 173
AvrII CCTAGG 1 cut(s) 46
BanI GGYRCC 1 cut(s) 113
BanII GRGCYC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 60, 191
BccI CCATC 4 cut(s) 132, 134, 201, 229
BceAI ACGGC 1 cut(s) 136
BciT130I CCWGG 1 cut(s) 63
BfaI CTAG 2 cut(s) 47, 255
BisI GCNGC 2 cut(s) 74, 205
BlnI CCTAGG 1 cut(s) 46
BlsI GCNGC 2 cut(s) 75, 206
Bme1390I CCNGG 1 cut(s) 63
BmiI GGNNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 63
Bpu10I CCTNAGC 1 cut(s) 208
BsaHI GRCGYC 1 cut(s) 6
BsaJI CCNNGG 1 cut(s) 46
BsaWI WCCGGW 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 52
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 46
BseLI CCNNNNNNNGG 1 cut(s) 52
BseMII CTCAG 1 cut(s) 24
BseXI GCAGC 2 cut(s) 60, 191
Bsh1285I CGRYCG 1 cut(s) 89
BshFI GGCC 1 cut(s) 123
BshNI GGYRCC 1 cut(s) 113
BsiEI CGRYCG 1 cut(s) 89
BsiSI CCGG 1 cut(s) 89
BslI CCNNNNNNNGG 1 cut(s) 52
BsnI GGCC 1 cut(s) 123
Bsp1286I GDGCHC 1 cut(s) 30
Bsp143I GATC 1 cut(s) 181
BspACI CCGC 1 cut(s) 111
BspANI GGCC 1 cut(s) 123
BspCNI CTCAG 1 cut(s) 25
BspLI GGNNCC 1 cut(s) 115
BspT107I GGYRCC 1 cut(s) 113
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 181
BssNI GRCGYC 1 cut(s) 6
BssT1I CCWWGG 1 cut(s) 46
Bst2UI CCWGG 1 cut(s) 63
BstACI GRCGYC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 33, 208
BstENI CCTNNNNNAGG 1 cut(s) 50
BstKTI GATC 1 cut(s) 184
BstMBI GATC 1 cut(s) 181
BstMCI CGRYCG 1 cut(s) 89
BstNI CCWGG 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 61
BstV1I GCAGC 2 cut(s) 60, 191
BsuRI GGCC 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 24
CseI GACGC 1 cut(s) 14
Csp6I GTAC 1 cut(s) 114
CviJI RGCY 7 cut(s) 28, 73, 123, 154, 167, 204, 241
CviKI_1 RGCY 7 cut(s) 28, 73, 123, 154, 167, 204, 241
CviQI GTAC 1 cut(s) 114
DdeI CTNAG 2 cut(s) 33, 208
DpnI GATC 1 cut(s) 183
DpnII GATC 1 cut(s) 181
EaeI YGGCCR 1 cut(s) 121
Eco130I CCWWGG 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 30
EcoNI CCTNNNNNAGG 1 cut(s) 50
EcoRI GAATTC 2 cut(s) 39, 96
EcoRII CCWGG 1 cut(s) 61
EcoT14I CCWWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 46
FaiI YATR 1 cut(s) 11
FalI AAGNNNNNCTT 2 cut(s) 156, 188
Fnu4HI GCNGC 2 cut(s) 74, 205
FriOI GRGCYC 1 cut(s) 30
Fsp4HI GCNGC 2 cut(s) 74, 205
FspBI CTAG 2 cut(s) 47, 255
GluI GCNGC 2 cut(s) 74, 205
HaeIII GGCC 1 cut(s) 123
HapII CCGG 1 cut(s) 89
HgaI GACGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 6
HinfI GANTC 2 cut(s) 14, 145
HpaII CCGG 1 cut(s) 89
HphI GGTGA 2 cut(s) 149, 173
Hpy188I TCNGA 2 cut(s) 181, 201
Hpy99I CGWCG 1 cut(s) 201
HpyF3I CTNAG 2 cut(s) 33, 208
Hsp92I GRCGYC 1 cut(s) 6
KpnI GGTACC 1 cut(s) 117
Kzo9I GATC 1 cut(s) 181
LmnI GCTCC 2 cut(s) 201, 238
LpnPI CCDG 5 cut(s) 38, 45, 48, 75, 102
Lsp1109I GCAGC 2 cut(s) 60, 191
MaeI CTAG 2 cut(s) 47, 255
MalI GATC 1 cut(s) 183
MboI GATC 1 cut(s) 181
MboII GAAGA 1 cut(s) 164
MhlI GDGCHC 1 cut(s) 30
MluCI AATT 2 cut(s) 39, 96
MmeI TCCRAC 1 cut(s) 179
MroXI GAANNNNTTC 1 cut(s) 96
MslI CAYNNNNRTG 1 cut(s) 105
MspI CCGG 1 cut(s) 89
MspR9I CCNGG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 63
NdeII GATC 1 cut(s) 181
NlaIV GGNNCC 1 cut(s) 115
OliI CACNNNNGTG 1 cut(s) 105
PdmI GAANNNNTTC 1 cut(s) 96
PfeI GAWTC 2 cut(s) 14, 145
PkrI GCNGC 2 cut(s) 75, 206
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 115
RsaI GTAC 1 cut(s) 115
RsaNI GTAC 1 cut(s) 114
RseI CAYNNNNRTG 1 cut(s) 105
SatI GCNGC 2 cut(s) 74, 205
Sau3AI GATC 1 cut(s) 181
ScrFI CCNGG 1 cut(s) 63
SduI GDGCHC 1 cut(s) 30
SetI ASST 7 cut(s) 75, 109, 119, 169, 206, 214, 243
SmiMI CAYNNNNRTG 1 cut(s) 105
Sse9I AATT 2 cut(s) 39, 96
SsiI CCGC 1 cut(s) 111
SspMI CTAG 2 cut(s) 47, 255
StyD4I CCNGG 1 cut(s) 61
StyI CCWWGG 1 cut(s) 46
TasI AATT 2 cut(s) 39, 96
TfiI GAWTC 2 cut(s) 14, 145
TscAI CASTG 1 cut(s) 24
TseI GCWGC 2 cut(s) 73, 204
TspDTI ATGAA 1 cut(s) 164
TspRI CASTG 1 cut(s) 24
XagI CCTNNNNNAGG 1 cut(s) 50
XapI RAATTY 2 cut(s) 39, 96
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XmaJI CCTAGG 1 cut(s) 46
XmnI GAANNNNTTC 1 cut(s) 96
XspI CTAG 2 cut(s) 47, 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.