Rroxscaffold_2G00092970

SAM domain (Sterile alpha motif)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
14408103 .. 14411041
2939 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00092970.1

Sequence Viewer

Length: 180 bp
ATGGTTAGGGAGATGAGCAGAGAGCAGCCACCGGAGCCTCTTGATTTCTTTATTTGGACTGTTGAGGATGTTGGTTTATGGTTAGAAGAGATAAATCTGGGCAGTTACCGGCAAACTTTCTTTCAAGGAAAATGGTGTCAATGGAGAGTACCTAGAAGGCATGTCTATGTTCACTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

59

Amino Acids

7.39

Weight (kDa)

6.04

Isoelectric Point (pI)

70.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020442)

Species Orthologous Gene IDs
pyrus_communis pycom09g04730
rosa_roxburghii Rroxscaffold_2G00092970
rosa_samantha Rh2AG519900 Rh2CG504900 Rh2DG541200 Rh7BG370900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 150
AgsI TTSAA 1 cut(s) 125
ApeKI GCWGC 1 cut(s) 25
BbvI GCAGC 1 cut(s) 37
BfaI CTAG 1 cut(s) 153
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 36
BsaWI WCCGGW 1 cut(s) 31
Bse118I RCCGGY 1 cut(s) 108
BseGI GGATG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 37
BsiSI CCGG 2 cut(s) 32, 109
BspLI GGNNCC 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 61
Bst6I CTCTTC 1 cut(s) 81
BstF5I GGATG 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 164
BstV1I GCAGC 1 cut(s) 37
BtsCI GGATG 1 cut(s) 73
Cfr10I RCCGGY 1 cut(s) 108
Csp6I GTAC 1 cut(s) 149
CviAII CATG 1 cut(s) 161
CviJI RGCY 2 cut(s) 28, 37
CviKI_1 RGCY 2 cut(s) 28, 37
CviQI GTAC 1 cut(s) 149
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
FaeI CATG 1 cut(s) 164
FaiI YATR 3 cut(s) 79, 162, 168
FatI CATG 1 cut(s) 160
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 1 cut(s) 153
GluI GCNGC 1 cut(s) 26
HapII CCGG 2 cut(s) 32, 109
Hin1II CATG 1 cut(s) 164
HpaII CCGG 2 cut(s) 32, 109
Hpy166II GTNNAC 1 cut(s) 172
Hpy188III TCNNGA 1 cut(s) 41
Hpy8I GTNNAC 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 150
HpyCH4III ACNGT 1 cut(s) 61
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
Hsp92II CATG 1 cut(s) 164
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 3 cut(s) 45, 83, 122
Lsp1109I GCAGC 1 cut(s) 37
MaeI CTAG 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 104
MboII GAAGA 1 cut(s) 98
MnlI CCTC 2 cut(s) 48, 58
MslI CAYNNNNRTG 1 cut(s) 165
MspI CCGG 2 cut(s) 32, 109
MwoI GCNNNNNNNGC 1 cut(s) 34
NlaIII CATG 1 cut(s) 164
NlaIV GGNNCC 1 cut(s) 36
NspI RCATGY 1 cut(s) 164
PkrI GCNGC 1 cut(s) 27
PspN4I GGNNCC 1 cut(s) 36
RsaI GTAC 1 cut(s) 150
RsaNI GTAC 1 cut(s) 149
RseI CAYNNNNRTG 1 cut(s) 165
SatI GCNGC 1 cut(s) 26
SetI ASST 1 cut(s) 154
SgeI CNNG 7 cut(s) 44, 53, 110, 121, 137, 165, 173
SmiMI CAYNNNNRTG 1 cut(s) 165
SspMI CTAG 1 cut(s) 153
TaaI ACNGT 1 cut(s) 61
TseI GCWGC 1 cut(s) 25
XceI RCATGY 1 cut(s) 164
XspI CTAG 1 cut(s) 153
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.