Rh2DG541200

SAM domain (Sterile alpha motif)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Reverse (-)
77022836 .. 77025894
3059 bp
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UTR
Exon/CDS
Intron
Rh2DG541200.1

Sequence Viewer

Length: 282 bp
ATGGTTAGGGAGATGAGCAGAGAGCAGCCACCGGAGCCTCTTGATTTCTTTATTTGGACTGTTGAGGATGTTGGTTTATGGTTAGAAGAGATAAATCTGGGCAGTTACCGGCAAACTTTCAAGGAAAATGGTGTCAATGGAGAGTACCTAGAAGGCATGTCTATGTTCACTACTGAGCAGATTCTTCGCTTTATAAGACGATGCCACATGAAATGGGGAGATTTTATCACACTGTGTAAGGAGCTAAGGCGAATTAAAGGTCTGCATTTTCTTCCTTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

93

Amino Acids

11.23

Weight (kDa)

5.67

Isoelectric Point (pI)

61.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SAM_1 PF00536 18 - 55 3.2e-07 SAM domain (Sterile alpha motif)
SAM_2 PF07647 19 - 55 4.5e-08 SAM domain (Sterile alpha motif)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020442)

Species Orthologous Gene IDs
pyrus_communis pycom09g04730
rosa_roxburghii Rroxscaffold_2G00092970
rosa_samantha Rh2AG519900 Rh2CG504900 Rh2DG541200 Rh7BG370900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 194
AdeI CACNNNGTG 1 cut(s) 234
AfaI GTAC 1 cut(s) 146
AgsI TTSAA 1 cut(s) 121
AluBI AGCT 1 cut(s) 244
AluI AGCT 1 cut(s) 244
ApeKI GCWGC 1 cut(s) 25
ArsI GACNNNNNNTTYG 2 cut(s) 244, 276
BbvI GCAGC 1 cut(s) 37
BcgI CGANNNNNNTGC 2 cut(s) 167, 201
BfaI CTAG 1 cut(s) 149
BisI GCNGC 1 cut(s) 26
BlsI GCNGC 1 cut(s) 27
BmiI GGNNCC 1 cut(s) 36
BmsI GCATC 1 cut(s) 191
Bpu10I CCTNAGC 1 cut(s) 245
BsaWI WCCGGW 1 cut(s) 31
Bse118I RCCGGY 1 cut(s) 108
BseGI GGATG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 165
BseXI GCAGC 1 cut(s) 37
BsiSI CCGG 2 cut(s) 32, 109
BspCNI CTCAG 1 cut(s) 166
BspLI GGNNCC 1 cut(s) 36
BsrFI RCCGGY 1 cut(s) 108
BssAI RCCGGY 1 cut(s) 108
Bst4CI ACNGT 2 cut(s) 61, 234
Bst6I CTCTTC 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 174, 245
BstF5I GGATG 1 cut(s) 73
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNSI RCATGY 1 cut(s) 160
BstV1I GCAGC 1 cut(s) 37
BtsCI GGATG 1 cut(s) 73
BtsIMutI CAGTG 1 cut(s) 230
Cfr10I RCCGGY 1 cut(s) 108
Csp6I GTAC 1 cut(s) 145
CviAII CATG 2 cut(s) 157, 208
CviJI RGCY 3 cut(s) 28, 37, 244
CviKI_1 RGCY 3 cut(s) 28, 37, 244
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 2 cut(s) 174, 245
DraIII CACNNNGTG 1 cut(s) 234
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
FaeI CATG 2 cut(s) 160, 211
FaiI YATR 5 cut(s) 79, 158, 164, 194, 209
FatI CATG 2 cut(s) 156, 207
Fnu4HI GCNGC 1 cut(s) 26
FokI GGATG 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 26
FspBI CTAG 1 cut(s) 149
GluI GCNGC 1 cut(s) 26
HapII CCGG 2 cut(s) 32, 109
Hin1II CATG 2 cut(s) 160, 211
HinfI GANTC 1 cut(s) 181
HpaII CCGG 2 cut(s) 32, 109
Hpy166II GTNNAC 1 cut(s) 168
Hpy188III TCNNGA 1 cut(s) 41
Hpy8I GTNNAC 1 cut(s) 168
HpyAV CCTTC 1 cut(s) 146
HpyCH4III ACNGT 2 cut(s) 61, 234
HpyCH4V TGCA 1 cut(s) 265
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpyF3I CTNAG 2 cut(s) 174, 245
Hsp92II CATG 2 cut(s) 160, 211
LmnI GCTCC 2 cut(s) 34, 241
LpnPI CCDG 3 cut(s) 45, 83, 122
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 191
MaeI CTAG 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 104
MboII GAAGA 3 cut(s) 98, 176, 263
MluCI AATT 1 cut(s) 252
MnlI CCTC 2 cut(s) 48, 58
MseI TTAA 1 cut(s) 255
MslI CAYNNNNRTG 1 cut(s) 161
MspI CCGG 2 cut(s) 32, 109
MwoI GCNNNNNNNGC 1 cut(s) 34
NlaIII CATG 2 cut(s) 160, 211
NlaIV GGNNCC 1 cut(s) 36
NspI RCATGY 1 cut(s) 160
PfeI GAWTC 1 cut(s) 181
PkrI GCNGC 1 cut(s) 27
PsiI TTATAA 1 cut(s) 194
PspN4I GGNNCC 1 cut(s) 36
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
RseI CAYNNNNRTG 1 cut(s) 161
SaqAI TTAA 1 cut(s) 255
SatI GCNGC 1 cut(s) 26
SetI ASST 3 cut(s) 150, 246, 262
SfaNI GCATC 1 cut(s) 191
SgeI CNNG 8 cut(s) 44, 53, 110, 121, 133, 161, 169, 220
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 1 cut(s) 252
SspMI CTAG 1 cut(s) 149
TaaI ACNGT 2 cut(s) 61, 234
TasI AATT 1 cut(s) 252
TfiI GAWTC 1 cut(s) 181
Tru1I TTAA 1 cut(s) 255
Tru9I TTAA 1 cut(s) 255
TscAI CASTG 1 cut(s) 237
TseI GCWGC 1 cut(s) 25
TspDTI ATGAA 1 cut(s) 224
TspRI CASTG 1 cut(s) 237
XceI RCATGY 1 cut(s) 160
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.