Rroxscaffold_2G00101840

Has 22 Blast hits to 22 proteins in 10

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
23770156 .. 23771868
1713 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00101840.1

Sequence Viewer

Length: 198 bp
ATGGCAATAAAGCCAACAGTTGCCTTGAGAGCTATACTTGTGGGAGGAATAGCGGCATTTGCAAAAGTGGCTGGTGCAATGAAGGCTGCAGGTGGTGCCAAGCTGGGTGTAGCCGCAGCTGCCATGTCGGCAGCAGCAAGTGCTGCTTTGTCATCAAAACAAGAATTGAAGGATGACTCAAAGCAGCCTTCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

6.24

Weight (kDa)

10.22

Isoelectric Point (pI)

38.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0017932)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G13845 AT3G13845
malus_domestica MD09G1192600.v1.1
prunus_persica Prupe.3G048900_v2.0.a1
rosa_chinensis RchiOBHm_Chr2g0143441
rosa_roxburghii Rroxscaffold_2G00101840
rosa_samantha Rh2AG434600 Rh2BG442400 Rh2CG420500 Rh2DG452600
rosa_wichuraiana Rw2G035410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 80
Acc36I ACCTGC 1 cut(s) 80
AccB1I GGYRCC 1 cut(s) 95
AciI CCGC 2 cut(s) 53, 114
AgsI TTSAA 2 cut(s) 169, 192
AluBI AGCT 3 cut(s) 32, 103, 119
AluI AGCT 3 cut(s) 32, 103, 119
ApeKI GCWGC 7 cut(s) 86, 116, 119, 131, 134, 143, 184
BanI GGYRCC 1 cut(s) 95
BbvI GCAGC 6 cut(s) 73, 106, 128, 130, 143, 146
BfmI CTRYAG 1 cut(s) 87
BfuAI ACCTGC 1 cut(s) 80
BglI GCCNNNNNGGC 1 cut(s) 128
BisI GCNGC 9 cut(s) 54, 87, 114, 117, 120, 132, 135, 144, 185
BlsI GCNGC 9 cut(s) 55, 88, 115, 118, 121, 133, 136, 145, 186
BmiI GGNNCC 1 cut(s) 97
BpuEI CTTGAG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 84
BseGI GGATG 1 cut(s) 178
BseMI GCAATG 1 cut(s) 84
BseXI GCAGC 6 cut(s) 73, 106, 128, 130, 143, 146
BseYI CCCAGC 1 cut(s) 103
BshNI GGYRCC 1 cut(s) 95
BspACI CCGC 2 cut(s) 53, 114
BspLI GGNNCC 1 cut(s) 97
BspMAI CTGCAG 1 cut(s) 91
BspMI ACCTGC 1 cut(s) 80
BspT107I GGYRCC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 19
BstAPI GCANNNNNTGC 3 cut(s) 95, 140, 143
BstF5I GGATG 1 cut(s) 178
BstMWI GCNNNNNNNGC 9 cut(s) 29, 59, 68, 83, 95, 119, 128, 140, 143
BstSFI CTRYAG 1 cut(s) 87
BstV1I GCAGC 6 cut(s) 73, 106, 128, 130, 143, 146
BtsCI GGATG 1 cut(s) 178
BveI ACCTGC 1 cut(s) 80
CviAII CATG 1 cut(s) 124
CviJI RGCY 8 cut(s) 13, 32, 71, 86, 103, 113, 119, 187
CviKI_1 RGCY 8 cut(s) 13, 32, 71, 86, 103, 113, 119, 187
FaeI CATG 1 cut(s) 127
FaiI YATR 2 cut(s) 35, 125
FalI AAGNNNNNCTT 2 cut(s) 130, 162
FatI CATG 1 cut(s) 123
Fnu4HI GCNGC 9 cut(s) 54, 87, 114, 117, 120, 132, 135, 144, 185
FokI GGATG 1 cut(s) 185
Fsp4HI GCNGC 9 cut(s) 54, 87, 114, 117, 120, 132, 135, 144, 185
GluI GCNGC 9 cut(s) 54, 87, 114, 117, 120, 132, 135, 144, 185
GsaI CCCAGC 1 cut(s) 107
Hin1II CATG 1 cut(s) 127
HinfI GANTC 1 cut(s) 176
HpyAV CCTTC 3 cut(s) 76, 163, 198
HpyCH4III ACNGT 1 cut(s) 19
HpyCH4V TGCA 3 cut(s) 62, 77, 89
HpyF10VI GCNNNNNNNGC 9 cut(s) 29, 59, 68, 83, 95, 119, 128, 140, 143
Hsp92II CATG 1 cut(s) 127
LpnPI CCDG 3 cut(s) 57, 75, 89
Lsp1109I GCAGC 6 cut(s) 73, 106, 128, 130, 143, 146
MluCI AATT 1 cut(s) 164
MlyI GAGTC 1 cut(s) 170
MnlI CCTC 1 cut(s) 38
MspA1I CMGCKG 1 cut(s) 119
MwoI GCNNNNNNNGC 9 cut(s) 29, 59, 68, 83, 95, 119, 128, 140, 143
NlaIII CATG 1 cut(s) 127
NlaIV GGNNCC 1 cut(s) 97
PaqCI CACCTGC 1 cut(s) 80
PkrI GCNGC 9 cut(s) 55, 88, 115, 118, 121, 133, 136, 145, 186
PleI GAGTC 1 cut(s) 170
PpsI GAGTC 1 cut(s) 170
PspFI CCCAGC 1 cut(s) 103
PspN4I GGNNCC 1 cut(s) 97
PstI CTGCAG 1 cut(s) 91
PvuII CAGCTG 1 cut(s) 119
SatI GCNGC 9 cut(s) 54, 87, 114, 117, 120, 132, 135, 144, 185
SchI GAGTC 1 cut(s) 170
SetI ASST 4 cut(s) 34, 94, 105, 121
SfcI CTRYAG 1 cut(s) 87
SgeI CNNG 9 cut(s) 37, 50, 84, 102, 112, 116, 136, 150, 173
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 1 cut(s) 164
SsiI CCGC 2 cut(s) 53, 114
TaaI ACNGT 1 cut(s) 19
TasI AATT 1 cut(s) 164
TauI GCSGC 2 cut(s) 56, 116
TseI GCWGC 7 cut(s) 86, 116, 119, 131, 134, 143, 184
TspDTI ATGAA 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.