Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0025555

Physical Location & Seq

Genomic Coordinates Reverse (-)

28490344 .. 28490818

Gene Structure 475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00105040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGACCAGCATAAGCCAAAGCCTCATGATCAGCAGAAGCCAAGGCCTGATGATCAGTAGAAGCCAACGTCTGATGGATCAGCAGCAGCCAAAGTTGCAGTCAACTGAATGGAAACATGCTCATGCCACATTCTATGAAGGAGGTTCCGGAACATTTGGTGGAGCTTGTGGATACCATGATGTAGTTCAAGAAGGCTATGGCCTGGAGACATTAGCATTAATTGAGCAATGCATTGTTCAACAAGGTGGAGATGTGTGGTGCATGCTTCGAAATCAAATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005618 GO:0005623 GO:0006949 GO:0008150 GO:0009653 GO:0009987 GO:0016020 GO:0030312 GO:0032502 GO:0044464 GO:0048646 GO:0048856 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DPBB_1 Pollen_allerg_1

Protein Analysis

93

Amino Acids

10.37

Weight (kDa)

5.81

Isoelectric Point (pI)

73.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025555)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003244.1_g000025
rosa_roxburghii	Rroxscaffold_2G00105040
rosa_samantha	Rh2BG422200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	146
AclWI	GGATC	1 cut(s)	84
AgsI	TTSAA	2 cut(s)	188, 239
AjnI	CCWGG	1 cut(s)	201
AluBI	AGCT	1 cut(s)	164
AluI	AGCT	1 cut(s)	164
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	84
Aor13HI	TCCGGA	1 cut(s)	146
AoxI	GGCC	2 cut(s)	43, 199
ApeKI	GCWGC	2 cut(s)	82, 85
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AseI	ATTAAT	1 cut(s)	218
AsuII	TTCGAA	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	94, 97
BccI	CCATC	1 cut(s)	67
BciT130I	CCWGG	1 cut(s)	203
BciVI	GTATCC	1 cut(s)	164
BclI	TGATCA	2 cut(s)	27, 51
BcoDI	GTCTC	1 cut(s)	200
BfuI	GTATCC	1 cut(s)	164
BisI	GCNGC	2 cut(s)	83, 86
BlsI	GCNGC	2 cut(s)	84, 87
Bme1390I	CCNGG	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	145
BmrFI	CCNGG	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	224
Bpu14I	TTCGAA	1 cut(s)	268
BsaJI	CCNNGG	1 cut(s)	40
BsaWI	WCCGGW	1 cut(s)	146
Bse3DI	GCAATG	1 cut(s)	233
BseAI	TCCGGA	1 cut(s)	146
BseBI	CCWGG	1 cut(s)	203
BseDI	CCNNGG	1 cut(s)	40
BseMI	GCAATG	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	94, 97
BshFI	GGCC	2 cut(s)	45, 201
BsiSI	CCGG	1 cut(s)	147
BsmAI	GTCTC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	45, 201
Bsp119I	TTCGAA	1 cut(s)	268
Bsp13I	TCCGGA	1 cut(s)	146
Bsp143I	GATC	3 cut(s)	27, 51, 76
BspANI	GGCC	2 cut(s)	45, 201
BspEI	TCCGGA	1 cut(s)	146
BspHI	TCATGA	1 cut(s)	24
BspLI	GGNNCC	1 cut(s)	145
BspPI	GGATC	1 cut(s)	84
BspT104I	TTCGAA	1 cut(s)	268
BsrDI	GCAATG	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	40
BssMI	GATC	3 cut(s)	27, 51, 76
BssT1I	CCWWGG	1 cut(s)	40
Bst2UI	CCWGG	1 cut(s)	203
BstBI	TTCGAA	1 cut(s)	268
BstC8I	GCNNGC	1 cut(s)	263
BstKTI	GATC	3 cut(s)	30, 54, 79
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	3 cut(s)	27, 51, 76
BstMWI	GCNNNNNNNGC	1 cut(s)	94
BstNI	CCWGG	1 cut(s)	203
BstNSI	RCATGY	2 cut(s)	119, 265
BstSCI	CCNGG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	94, 97
BsuI	GTATCC	1 cut(s)	164
BsuRI	GGCC	2 cut(s)	45, 201
Cac8I	GCNNGC	1 cut(s)	263
CciI	TCATGA	1 cut(s)	24
CviAII	CATG	5 cut(s)	25, 116, 122, 176, 262
CviJI	RGCY	9 cut(s)	15, 21, 39, 45, 63, 88, 164, 195, 201
CviKI_1	RGCY	9 cut(s)	15, 21, 39, 45, 63, 88, 164, 195, 201
DpnI	GATC	3 cut(s)	29, 53, 78
DpnII	GATC	3 cut(s)	27, 51, 76
Eco130I	CCWWGG	1 cut(s)	40
Eco147I	AGGCCT	1 cut(s)	45
EcoRII	CCWGG	1 cut(s)	201
EcoT14I	CCWWGG	1 cut(s)	40
EcoT22I	ATGCAT	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	40
FaeI	CATG	5 cut(s)	28, 119, 125, 179, 265
FaiI	YATR	8 cut(s)	11, 26, 117, 123, 135, 177, 198, 263
FatI	CATG	5 cut(s)	24, 115, 121, 175, 261
FbaI	TGATCA	2 cut(s)	27, 51
Fnu4HI	GCNGC	2 cut(s)	83, 86
Fsp4HI	GCNGC	2 cut(s)	83, 86
GluI	GCNGC	2 cut(s)	83, 86
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	2 cut(s)	45, 201
HapII	CCGG	1 cut(s)	147
Hin1II	CATG	5 cut(s)	28, 119, 125, 179, 265
HincII	GTYRAC	1 cut(s)	102
HindII	GTYRAC	1 cut(s)	102
HpaII	CCGG	1 cut(s)	147
Hpy166II	GTNNAC	1 cut(s)	102
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	3 cut(s)	25, 147, 188
Hpy8I	GTNNAC	1 cut(s)	102
HpyAV	CCTTC	2 cut(s)	131, 185
HpyCH4IV	ACGT	1 cut(s)	67
HpyCH4V	TGCA	3 cut(s)	97, 231, 261
HpyF10VI	GCNNNNNNNGC	1 cut(s)	94
HpySE526I	ACGT	1 cut(s)	67
Hsp92II	CATG	5 cut(s)	28, 119, 125, 179, 265
Kpn2I	TCCGGA	1 cut(s)	146
Ksp22I	TGATCA	2 cut(s)	27, 51
Kzo9I	GATC	3 cut(s)	27, 51, 76
LmnI	GCTCC	1 cut(s)	161
LpnPI	CCDG	5 cut(s)	19, 59, 160, 188, 215
Lsp1109I	GCAGC	2 cut(s)	94, 97
MaeII	ACGT	1 cut(s)	67
MalI	GATC	3 cut(s)	29, 53, 78
MboI	GATC	3 cut(s)	27, 51, 76
MluCI	AATT	1 cut(s)	219
MnlI	CCTC	2 cut(s)	32, 134
Mph1103I	ATGCAT	1 cut(s)	233
MroI	TCCGGA	1 cut(s)	146
MseI	TTAA	1 cut(s)	218
MslI	CAYNNNNRTG	1 cut(s)	120
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	203
MvaI	CCWGG	1 cut(s)	203
MwoI	GCNNNNNNNGC	1 cut(s)	94
NdeII	GATC	3 cut(s)	27, 51, 76
NlaIII	CATG	5 cut(s)	28, 119, 125, 179, 265
NlaIV	GGNNCC	1 cut(s)	145
NsiI	ATGCAT	1 cut(s)	233
NspI	RCATGY	2 cut(s)	119, 265
NspV	TTCGAA	1 cut(s)	268
PaeI	GCATGC	1 cut(s)	265
PagI	TCATGA	1 cut(s)	24
PceI	AGGCCT	1 cut(s)	45
PkrI	GCNGC	2 cut(s)	84, 87
PshBI	ATTAAT	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	201
PspGI	CCWGG	1 cut(s)	201
PspN4I	GGNNCC	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	120
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	2 cut(s)	83, 86
Sau3AI	GATC	3 cut(s)	27, 51, 76
ScrFI	CCNGG	1 cut(s)	203
SetI	ASST	4 cut(s)	70, 145, 166, 247
SfuI	TTCGAA	1 cut(s)	268
SmiMI	CAYNNNNRTG	1 cut(s)	120
SphI	GCATGC	1 cut(s)	265
Sse9I	AATT	1 cut(s)	219
SseBI	AGGCCT	1 cut(s)	45
StuI	AGGCCT	1 cut(s)	45
StyD4I	CCNGG	1 cut(s)	201
StyI	CCWWGG	1 cut(s)	40
TaiI	ACGT	1 cut(s)	70
TaqI	TCGA	1 cut(s)	268
TasI	AATT	1 cut(s)	219
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TseI	GCWGC	2 cut(s)	82, 85
TspDTI	ATGAA	1 cut(s)	150
VspI	ATTAAT	1 cut(s)	218
XceI	RCATGY	2 cut(s)	119, 265
Zsp2I	ATGCAT	1 cut(s)	233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.