Rh2BG422200

expansin-A9-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
59317172 .. 59318274
1103 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG422200.1

Sequence Viewer

Length: 333 bp
ATGTCTTTGAGAGCTTTGTGTTGGTCGTTCCTTGTCTTCTTTTTTGTTGTCTATGTCAATGCTCATGATCATCATAAGCCAAAGCCTCATGATCAGCATAAGCCAAAGCCTCATGACCAGCAGAAGCCAAGGCCTGATGGTCAGCAGAAGCCAAGGCCTGATGATCAGCAGAAGCCAACGTTTGATGATCAGCAGAAGCCAAAGTTGCAGTCAACTGAATGGAAACATGCTCATGCCACATTCTATGAAGGAGGTTCCGGAACATTTGGTGGAGCTTGTGGATACCATGATGTAGTTCAAGAAGGTTATGGCCTGGAGACAGTAGAGCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

110

Amino Acids

12.69

Weight (kDa)

6.78

Isoelectric Point (pI)

40.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0025555)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0003244.1_g000025
rosa_roxburghii Rroxscaffold_2G00105040
rosa_samantha Rh2BG422200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 257
AclI AACGTT 1 cut(s) 179
AgsI TTSAA 1 cut(s) 299
AjnI CCWGG 1 cut(s) 312
AluBI AGCT 2 cut(s) 14, 275
AluI AGCT 2 cut(s) 14, 275
Alw26I GTCTC 1 cut(s) 311
Aor13HI TCCGGA 1 cut(s) 257
AoxI GGCC 3 cut(s) 131, 155, 310
ArsI GACNNNNNNTTYG 2 cut(s) 194, 226
BbsI GAAGAC 1 cut(s) 28
BccI CCATC 1 cut(s) 131
BciT130I CCWGG 1 cut(s) 314
BciVI GTATCC 1 cut(s) 275
BclI TGATCA 4 cut(s) 67, 91, 163, 187
BcoDI GTCTC 1 cut(s) 311
BfuI GTATCC 1 cut(s) 275
Bme1390I CCNGG 1 cut(s) 314
BmiI GGNNCC 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 314
BpiI GAAGAC 1 cut(s) 28
BsaJI CCNNGG 2 cut(s) 128, 152
BsaWI WCCGGW 1 cut(s) 257
BseAI TCCGGA 1 cut(s) 257
BseBI CCWGG 1 cut(s) 314
BseDI CCNNGG 2 cut(s) 128, 152
BshFI GGCC 3 cut(s) 133, 157, 312
BsiSI CCGG 1 cut(s) 258
BsmAI GTCTC 1 cut(s) 311
BsnI GGCC 3 cut(s) 133, 157, 312
Bsp13I TCCGGA 1 cut(s) 257
Bsp143I GATC 4 cut(s) 67, 91, 163, 187
BspANI GGCC 3 cut(s) 133, 157, 312
BspEI TCCGGA 1 cut(s) 257
BspHI TCATGA 3 cut(s) 64, 88, 112
BspLI GGNNCC 1 cut(s) 256
BssECI CCNNGG 2 cut(s) 128, 152
BssMI GATC 4 cut(s) 67, 91, 163, 187
BssT1I CCWWGG 2 cut(s) 128, 152
Bst2UI CCWGG 1 cut(s) 314
Bst4CI ACNGT 1 cut(s) 322
BstKTI GATC 4 cut(s) 70, 94, 166, 190
BstMAI GTCTC 1 cut(s) 311
BstMBI GATC 4 cut(s) 67, 91, 163, 187
BstMWI GCNNNNNNNGC 1 cut(s) 205
BstNI CCWGG 1 cut(s) 314
BstNSI RCATGY 1 cut(s) 230
BstSCI CCNGG 1 cut(s) 312
BstV2I GAAGAC 1 cut(s) 28
BsuI GTATCC 1 cut(s) 275
BsuRI GGCC 3 cut(s) 133, 157, 312
CciI TCATGA 3 cut(s) 64, 88, 112
CviAII CATG 6 cut(s) 65, 89, 113, 227, 233, 287
DpnI GATC 4 cut(s) 69, 93, 165, 189
DpnII GATC 4 cut(s) 67, 91, 163, 187
Eco130I CCWWGG 2 cut(s) 128, 152
Eco147I AGGCCT 2 cut(s) 133, 157
EcoRII CCWGG 1 cut(s) 312
EcoT14I CCWWGG 2 cut(s) 128, 152
ErhI CCWWGG 2 cut(s) 128, 152
FaeI CATG 6 cut(s) 68, 92, 116, 230, 236, 290
FatI CATG 6 cut(s) 64, 88, 112, 226, 232, 286
FbaI TGATCA 4 cut(s) 67, 91, 163, 187
HaeIII GGCC 3 cut(s) 133, 157, 312
HapII CCGG 1 cut(s) 258
Hin1II CATG 6 cut(s) 68, 92, 116, 230, 236, 290
HincII GTYRAC 1 cut(s) 213
HindII GTYRAC 1 cut(s) 213
HpaII CCGG 1 cut(s) 258
Hpy166II GTNNAC 1 cut(s) 213
Hpy188III TCNNGA 5 cut(s) 65, 89, 113, 258, 299
Hpy8I GTNNAC 1 cut(s) 213
HpyAV CCTTC 2 cut(s) 242, 296
HpyCH4III ACNGT 1 cut(s) 322
HpyCH4IV ACGT 1 cut(s) 179
HpyCH4V TGCA 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 205
HpySE526I ACGT 1 cut(s) 179
Hsp92II CATG 6 cut(s) 68, 92, 116, 230, 236, 290
Kpn2I TCCGGA 1 cut(s) 257
Ksp22I TGATCA 4 cut(s) 67, 91, 163, 187
Kzo9I GATC 4 cut(s) 67, 91, 163, 187
LmnI GCTCC 1 cut(s) 272
LpnPI CCDG 6 cut(s) 131, 147, 171, 271, 299, 326
MaeII ACGT 1 cut(s) 179
MalI GATC 4 cut(s) 69, 93, 165, 189
MboI GATC 4 cut(s) 67, 91, 163, 187
MboII GAAGA 1 cut(s) 28
MnlI CCTC 3 cut(s) 96, 120, 245
MroI TCCGGA 1 cut(s) 257
MslI CAYNNNNRTG 1 cut(s) 231
MspI CCGG 1 cut(s) 258
MspR9I CCNGG 1 cut(s) 314
MvaI CCWGG 1 cut(s) 314
MwoI GCNNNNNNNGC 1 cut(s) 205
NdeII GATC 4 cut(s) 67, 91, 163, 187
NlaIII CATG 6 cut(s) 68, 92, 116, 230, 236, 290
NlaIV GGNNCC 1 cut(s) 256
NspI RCATGY 1 cut(s) 230
PagI TCATGA 3 cut(s) 64, 88, 112
PceI AGGCCT 2 cut(s) 133, 157
Psp1406I AACGTT 1 cut(s) 179
Psp6I CCWGG 1 cut(s) 312
PspGI CCWGG 1 cut(s) 312
PspN4I GGNNCC 1 cut(s) 256
RseI CAYNNNNRTG 1 cut(s) 231
Sau3AI GATC 4 cut(s) 67, 91, 163, 187
ScrFI CCNGG 1 cut(s) 314
SetI ASST 5 cut(s) 16, 182, 256, 277, 307
SmiMI CAYNNNNRTG 1 cut(s) 231
SseBI AGGCCT 2 cut(s) 133, 157
StuI AGGCCT 2 cut(s) 133, 157
StyD4I CCNGG 1 cut(s) 312
StyI CCWWGG 2 cut(s) 128, 152
TaaI ACNGT 1 cut(s) 322
TaiI ACGT 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 261
XceI RCATGY 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.