Rroxscaffold_2G00106740

Regulator of telomere elongation helicase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Reverse (-)
30323494 .. 30323876
383 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00106740.1

Sequence Viewer

Length: 222 bp
ATGAGAAGCGAAAGCTCACATAGATCTAAGTCATCTGATAGAGAAACTACTCAAAATGCTCAGGCTGGTTCAAACCTGCTGCTAAAGACAAGTGTAACATCGAGTCCTGTGCCTTCTGGTGATAGAGGAAACGAGAGGTTCTCAATTTCTTGTTCAGGTGAGGGTTCTGATGATGTTTTCTCATTGCTGGTTGGATTGCCTTCCAAGGATCGTGATGCTTAA

Protein Analysis

73

Amino Acids

7.73

Weight (kDa)

5.67

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0019477)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 84
AclWI GGATC 1 cut(s) 216
AgsI TTSAA 1 cut(s) 72
AluBI AGCT 1 cut(s) 15
AluI AGCT 1 cut(s) 15
AlwI GGATC 1 cut(s) 216
ApeKI GCWGC 1 cut(s) 79
AsuHPI GGTGA 2 cut(s) 131, 170
BbvI GCAGC 1 cut(s) 66
BcgI CGANNNNNNTGC 2 cut(s) 91, 125
BfuAI ACCTGC 1 cut(s) 84
BglII AGATCT 1 cut(s) 23
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
BmsI GCATC 1 cut(s) 205
BplI GAGNNNNNCTC 2 cut(s) 125, 157
Bpu10I CCTNAGC 1 cut(s) 60
BsaJI CCNNGG 1 cut(s) 204
Bse3DI GCAATG 1 cut(s) 182
BseDI CCNNGG 1 cut(s) 204
BseMI GCAATG 1 cut(s) 182
BseMII CTCAG 1 cut(s) 74
BseXI GCAGC 1 cut(s) 66
Bsp143I GATC 2 cut(s) 23, 208
BspCNI CTCAG 1 cut(s) 73
BspMI ACCTGC 1 cut(s) 84
BspPI GGATC 1 cut(s) 216
BsrDI GCAATG 1 cut(s) 182
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 2 cut(s) 23, 208
BssT1I CCWWGG 1 cut(s) 204
BstDEI CTNAG 2 cut(s) 27, 60
BstKTI GATC 2 cut(s) 26, 211
BstMBI GATC 2 cut(s) 23, 208
BstV1I GCAGC 1 cut(s) 66
BstX2I RGATCY 1 cut(s) 23
BstYI RGATCY 1 cut(s) 23
BveI ACCTGC 1 cut(s) 84
CviJI RGCY 2 cut(s) 15, 65
CviKI_1 RGCY 2 cut(s) 15, 65
DdeI CTNAG 2 cut(s) 27, 60
DpnI GATC 2 cut(s) 25, 210
DpnII GATC 2 cut(s) 23, 208
Eco130I CCWWGG 1 cut(s) 204
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaiI YATR 1 cut(s) 21
Fnu4HI GCNGC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 80
GluI GCNGC 1 cut(s) 80
HinfI GANTC 1 cut(s) 103
HphI GGTGA 2 cut(s) 131, 170
Hpy188I TCNGA 2 cut(s) 37, 169
Hpy188III TCNNGA 1 cut(s) 212
HpyAV CCTTC 2 cut(s) 123, 210
HpyF3I CTNAG 2 cut(s) 27, 60
Kzo9I GATC 2 cut(s) 23, 208
LpnPI CCDG 7 cut(s) 47, 51, 89, 102, 120, 141, 173
Lsp1109I GCAGC 1 cut(s) 66
LweI GCATC 1 cut(s) 205
MaeIII GTNAC 1 cut(s) 94
MalI GATC 2 cut(s) 25, 210
MboI GATC 2 cut(s) 23, 208
MflI RGATCY 1 cut(s) 23
MluCI AATT 1 cut(s) 144
MlyI GAGTC 1 cut(s) 112
MmeI TCCRAC 1 cut(s) 172
MnlI CCTC 3 cut(s) 119, 129, 154
MseI TTAA 1 cut(s) 220
NdeII GATC 2 cut(s) 23, 208
PkrI GCNGC 1 cut(s) 81
PleI GAGTC 1 cut(s) 111
PpsI GAGTC 1 cut(s) 111
PsuI RGATCY 1 cut(s) 23
SaqAI TTAA 1 cut(s) 220
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 2 cut(s) 23, 208
SchI GAGTC 1 cut(s) 112
SetI ASST 4 cut(s) 17, 78, 140, 160
SfaNI GCATC 1 cut(s) 205
Sse9I AATT 1 cut(s) 144
StyI CCWWGG 1 cut(s) 204
TaqI TCGA 1 cut(s) 101
TasI AATT 1 cut(s) 144
Tru1I TTAA 1 cut(s) 220
Tru9I TTAA 1 cut(s) 220
TseI GCWGC 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.