Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0019477

Physical Location & Seq

Genomic Coordinates Reverse (-)

30324026 .. 30328363

Gene Structure 4338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00106750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCTGAAATGTACGAGCATCCGCATTGTTACTCCAAATTTGGGGATGTGGTTTTTACATTAACCCGTTTCTTCCGGGATGGAGAAGCTCGGGGCCTTACAAAGCTGAATTTATTAACAACTGAAAAACAGGGTAAGATTGGTGCATCGATTACTGAGGCTAGAAGGGAAAAAGTGTCGAGCCTGGTGGGTGAAATCGTCCCTGCTAATCGCTCTTCTGTTACTTGCTGCAAGGATCAGTCTGTGTCATGGAAGTGCTCAAATAACGTATTAGGAAATGAGAAAAAGCTTCTTTCCCTTGAGAGGGAGAGTATGCAGTATCAACATAGAAATGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000723 GO:0000725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006282 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009892 GO:0009987 GO:0010569 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0032200 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0034645 GO:0036297 GO:0042592 GO:0043007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045005 GO:0045910 GO:0045934 GO:0046483 GO:0048229 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070716 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0099402 GO:1901360 GO:1901576 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD_2 Helicase_C_2

Protein Analysis

112

Amino Acids

12.71

Weight (kDa)

8.98

Isoelectric Point (pI)

30.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019477)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000019683
rosa_multiflora	Rmu_sc0002170.1_g000010 Rmu_sc0043083.1_g000001
rosa_roxburghii	Rroxscaffold_2G00106740 Rroxscaffold_2G00106750
rosa_samantha	Rh2AG393600 Rh2BG401100 Rh2CG380300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	23
AclWI	GGATC	1 cut(s)	243
AcsI	RAATTY	2 cut(s)	38, 109
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	3 cut(s)	42, 303, 304
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	3 cut(s)	89, 106, 289
AluI	AGCT	3 cut(s)	89, 106, 289
Alw21I	GWGCWC	1 cut(s)	260
AlwI	GGATC	1 cut(s)	243
Ama87I	CYCGRG	1 cut(s)	90
AoxI	GGCC	1 cut(s)	94
ApeKI	GCWGC	1 cut(s)	228
ApoI	RAATTY	2 cut(s)	38, 109
AspS9I	GGNCC	1 cut(s)	94
AsuC2I	CCSGG	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	203
AvaI	CYCGRG	1 cut(s)	90
Bbv12I	GWGCWC	1 cut(s)	260
BbvI	GCAGC	1 cut(s)	215
BccI	CCATC	1 cut(s)	74
BciT130I	CCWGG	1 cut(s)	185
BcnI	CCSGG	1 cut(s)	77
BfaI	CTAG	1 cut(s)	162
BisI	GCNGC	1 cut(s)	229
BlsI	GCNGC	1 cut(s)	230
Bme1390I	CCNGG	2 cut(s)	77, 185
BmeT110I	CYCGRG	1 cut(s)	90
BmgT120I	GGNCC	1 cut(s)	94
BmiI	GGNNCC	1 cut(s)	95
BmrFI	CCNGG	2 cut(s)	77, 185
BmsI	GCATC	2 cut(s)	28, 155
BpuEI	CTTGAG	1 cut(s)	320
BpuMI	CCSGG	1 cut(s)	77
Bsa29I	ATCGAT	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 303, 304
BseBI	CCWGG	1 cut(s)	185
BseCI	ATCGAT	1 cut(s)	149
BseGI	GGATG	3 cut(s)	19, 52, 85
BseLI	CCNNNNNNNGG	3 cut(s)	42, 303, 304
BseMII	CTCAG	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	215
BshFI	GGCC	1 cut(s)	96
BshVI	ATCGAT	1 cut(s)	149
BsiHKAI	GWGCWC	1 cut(s)	260
BsiHKCI	CYCGRG	1 cut(s)	90
BsiSI	CCGG	1 cut(s)	76
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	3 cut(s)	42, 303, 304
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	96
BsoBI	CYCGRG	1 cut(s)	90
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	235
BspACI	CCGC	1 cut(s)	23
BspANI	GGCC	1 cut(s)	96
BspCNI	CTCAG	1 cut(s)	148
BspDI	ATCGAT	1 cut(s)	149
BspLI	GGNNCC	1 cut(s)	95
BspPI	GGATC	1 cut(s)	243
BspQI	GCTCTTC	1 cut(s)	220
BssMI	GATC	1 cut(s)	235
Bst2UI	CCWGG	1 cut(s)	185
Bst6I	CTCTTC	1 cut(s)	220
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	3 cut(s)	19, 52, 85
BstKTI	GATC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	235
BstNI	CCWGG	1 cut(s)	185
BstSCI	CCNGG	2 cut(s)	75, 183
BstV1I	GCAGC	1 cut(s)	215
Bsu15I	ATCGAT	1 cut(s)	149
BsuRI	GGCC	1 cut(s)	96
BsuTUI	ATCGAT	1 cut(s)	149
BtsCI	GGATG	3 cut(s)	19, 52, 85
Cfr13I	GGNCC	1 cut(s)	94
ClaI	ATCGAT	1 cut(s)	149
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	1 cut(s)	249
CviJI	RGCY	7 cut(s)	5, 89, 96, 106, 161, 183, 289
CviKI_1	RGCY	7 cut(s)	5, 89, 96, 106, 161, 183, 289
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	1 cut(s)	237
DpnII	GATC	1 cut(s)	235
Eam1104I	CTCTTC	1 cut(s)	220
EarI	CTCTTC	1 cut(s)	220
Eco88I	CYCGRG	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	94
EcoRII	CCWGG	1 cut(s)	183
FaeI	CATG	1 cut(s)	252
FaiI	YATR	4 cut(s)	250, 314, 327, 337
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	1 cut(s)	248
Fnu4HI	GCNGC	1 cut(s)	229
FokI	GGATG	3 cut(s)	6, 59, 92
Fsp4HI	GCNGC	1 cut(s)	229
FspBI	CTAG	1 cut(s)	162
GluI	GCNGC	1 cut(s)	229
HaeIII	GGCC	1 cut(s)	96
HapII	CCGG	1 cut(s)	76
Hin1II	CATG	1 cut(s)	252
HindIII	AAGCTT	1 cut(s)	287
HpaII	CCGG	1 cut(s)	76
HphI	GGTGA	1 cut(s)	203
HpyAV	CCTTC	1 cut(s)	159
HpyCH4IV	ACGT	1 cut(s)	267
HpyCH4V	TGCA	3 cut(s)	146, 231, 316
HpyF3I	CTNAG	1 cut(s)	156
HpySE526I	ACGT	1 cut(s)	267
Hsp92II	CATG	1 cut(s)	252
Kzo9I	GATC	1 cut(s)	235
LguI	GCTCTTC	1 cut(s)	220
LpnPI	CCDG	5 cut(s)	89, 116, 170, 197, 216
Lsp1109I	GCAGC	1 cut(s)	215
LweI	GCATC	2 cut(s)	28, 155
MaeI	CTAG	1 cut(s)	162
MaeII	ACGT	1 cut(s)	267
MaeIII	GTNAC	2 cut(s)	29, 220
MalI	GATC	1 cut(s)	237
MboI	GATC	1 cut(s)	235
MboII	GAAGA	2 cut(s)	64, 207
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	2 cut(s)	38, 109
MnlI	CCTC	2 cut(s)	151, 297
MseI	TTAA	2 cut(s)	62, 116
MslI	CAYNNNNRTG	2 cut(s)	253, 330
MspI	CCGG	1 cut(s)	76
MspR9I	CCNGG	2 cut(s)	77, 185
MvaI	CCWGG	1 cut(s)	185
NciI	CCSGG	1 cut(s)	77
NdeII	GATC	1 cut(s)	235
NlaIII	CATG	1 cut(s)	252
NlaIV	GGNNCC	1 cut(s)	95
PciSI	GCTCTTC	1 cut(s)	220
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	1 cut(s)	230
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	95
PspPI	GGNCC	1 cut(s)	94
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	2 cut(s)	253, 330
SapI	GCTCTTC	1 cut(s)	220
SaqAI	TTAA	2 cut(s)	62, 116
SatI	GCNGC	1 cut(s)	229
Sau3AI	GATC	1 cut(s)	235
Sau96I	GGNCC	1 cut(s)	94
ScrFI	CCNGG	2 cut(s)	77, 185
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	4 cut(s)	91, 108, 270, 291
SfaNI	GCATC	2 cut(s)	28, 155
SmiMI	CAYNNNNRTG	2 cut(s)	253, 330
SmlI	CTYRAG	1 cut(s)	299
SmoI	CTYRAG	1 cut(s)	299
Sse9I	AATT	2 cut(s)	38, 109
SsiI	CCGC	1 cut(s)	23
SspMI	CTAG	1 cut(s)	162
StyD4I	CCNGG	2 cut(s)	75, 183
TaiI	ACGT	1 cut(s)	270
TaqI	TCGA	2 cut(s)	149, 179
TasI	AATT	2 cut(s)	38, 109
Tru1I	TTAA	2 cut(s)	62, 116
Tru9I	TTAA	2 cut(s)	62, 116
TseI	GCWGC	1 cut(s)	228
XapI	RAATTY	2 cut(s)	38, 109
XspI	CTAG	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.