Rroxscaffold_2G00111830

serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0030288
Physical Location & Seq
Reverse (-)
36611335 .. 36632795
21461 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00111830.1

Sequence Viewer

Length: 801 bp
ATGGCGCAGTACTCGATCTCCGACTTTCTTAGAGGAGGGCAATTGTTCGAGATTATAATCAGCTTCCTGCAACTCACCCATATCAAAAAAATCAAATCCCACATCGAAGATTCAAAACCCAAATCACGAAATGACAAAGATTCAAAATTTGGGTCTAAAGAACCAGAGATAGATACTACCTTTGGAGCTACGAAGAGAGTCGATCACGGTCTTGTAGCGATCGATCGATCGGACCGGGAGGCGGCTTGGAGACACGGGGTCGAGAGGCGACGTCGAGGACTCGAGATTCTTCAAACTCTCGAGCGAGCAATTGGTGTTGAGTTGGAAGTGAAAAGTAGAGATCGCCACGAGTTCGCAGCATTTTTTCGGATTGAGGCAAGTATTATCGTGAGGGTGAACCTTGGCCAAGGCATTTCGCTTTCGAAGATAAGTAGTGTGAGGCTCCATCGAAAGAAAGATTGTTGCTTTGGAGATTCCTTGGGTCGCGTTGCGATCGAGGCTACTTTGGTCAACAAGAGGAACAATCCCATCAGTGATACCTCTGGTGTCCTCACAATAAGCAGGTATGGAGTACTAGTGCTCTATGCTCATAACATGGAGAGTATTCCTACGTGGTACACAAATGTGTCGCAGTTGGTCCAAAACTCAAGCACTTTATCTGCACAGCTTTTAGATACAGGAGATTTAGTTCTGTTCCAGGATAATAAAACTAGGATATTTATAGGGAAAAGTTTTGATTATCTTACAGATACTCTAATCCCAGGTATGAAAGTGGGGATAAATATTGGGAAACTGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin DUF3403 PAN_2 Pkinase Pkinase_Tyr S_locus_glycop

Protein Analysis

266

Amino Acids

29.88

Weight (kDa)

9.49

Isoelectric Point (pI)

40.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 170 - 261 1.8e-19 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0030288)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0005061
rosa_roxburghii Rroxscaffold_2G00111830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 56
AatII GACGTC 1 cut(s) 274
Acc36I ACCTGC 1 cut(s) 552
AccII CGCG 1 cut(s) 486
AciI CCGC 1 cut(s) 242
AcoI YGGCCR 1 cut(s) 403
AcsI RAATTY 1 cut(s) 146
AcyI GRCGYC 1 cut(s) 271
AfaI GTAC 3 cut(s) 11, 573, 617
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 3 cut(s) 114, 144, 293
AhdI GACNNNNNGTC 1 cut(s) 257
AhlI ACTAGT 1 cut(s) 574
AjnI CCWGG 2 cut(s) 696, 760
AleI CACNNNNGTG 1 cut(s) 623
AloI GAACNNNNNNTCC 2 cut(s) 672, 704
AluBI AGCT 3 cut(s) 63, 188, 667
AluI AGCT 3 cut(s) 63, 188, 667
Alw21I GWGCWC 1 cut(s) 582
Alw26I GTCTC 1 cut(s) 244
Ama87I CYCGRG 2 cut(s) 281, 299
AoxI GGCC 1 cut(s) 403
ApeKI GCWGC 1 cut(s) 356
ApoI RAATTY 1 cut(s) 146
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 2 cut(s) 232, 637
AsuC2I CCSGG 1 cut(s) 236
AsuHPI GGTGA 2 cut(s) 67, 406
AsuII TTCGAA 1 cut(s) 422
AvaI CYCGRG 2 cut(s) 281, 299
AvaII GGWCC 2 cut(s) 232, 637
BalI TGGCCA 1 cut(s) 405
BauI CACGAG 1 cut(s) 347
Bbv12I GWGCWC 1 cut(s) 582
BbvI GCAGC 1 cut(s) 368
BccI CCATC 2 cut(s) 453, 536
BciT130I CCWGG 2 cut(s) 698, 762
BcnI CCSGG 1 cut(s) 236
BcoDI GTCTC 1 cut(s) 244
BcuI ACTAGT 1 cut(s) 574
BfaI CTAG 3 cut(s) 575, 711, 799
BfuAI ACCTGC 1 cut(s) 552
BisI GCNGC 2 cut(s) 243, 357
BlsI GCNGC 2 cut(s) 244, 358
BmcAI AGTACT 2 cut(s) 11, 573
Bme1390I CCNGG 3 cut(s) 236, 698, 762
Bme18I GGWCC 2 cut(s) 232, 637
BmeRI GACNNNNNGTC 1 cut(s) 257
BmeT110I CYCGRG 2 cut(s) 281, 299
BmgT120I GGNCC 2 cut(s) 232, 637
BmiI GGNNCC 1 cut(s) 443
BmrFI CCNGG 3 cut(s) 236, 698, 762
Bpu14I TTCGAA 1 cut(s) 422
BpuEI CTTGAG 1 cut(s) 631
BpuMI CCSGG 1 cut(s) 236
Bsa29I ATCGAT 2 cut(s) 222, 226
BsaAI YACGTR 1 cut(s) 612
BsaBI GATNNNNATC 1 cut(s) 56
BsaHI GRCGYC 1 cut(s) 271
BsaJI CCNNGG 4 cut(s) 400, 406, 477, 760
BsaXI ACNNNNNCTCC 5 cut(s) 32, 561, 591, 672, 702
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 798
Bse8I GATNNNNATC 1 cut(s) 56
BseBI CCWGG 2 cut(s) 698, 762
BseCI ATCGAT 2 cut(s) 222, 226
BseDI CCNNGG 4 cut(s) 400, 406, 477, 760
BseJI GATNNNNATC 1 cut(s) 56
BseLI CCNNNNNNNGG 1 cut(s) 241
BseNI ACTGG 1 cut(s) 798
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 1 cut(s) 368
BsgI GTGCAG 1 cut(s) 645
Bsh1236I CGCG 1 cut(s) 486
Bsh1285I CGRYCG 4 cut(s) 222, 226, 230, 495
BshFI GGCC 1 cut(s) 405
BshVI ATCGAT 2 cut(s) 222, 226
BsiEI CGRYCG 4 cut(s) 222, 226, 230, 495
BsiHKAI GWGCWC 1 cut(s) 582
BsiHKCI CYCGRG 2 cut(s) 281, 299
BsiSI CCGG 1 cut(s) 235
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 244
BsnI GGCC 1 cut(s) 405
BsoBI CYCGRG 2 cut(s) 281, 299
Bsp119I TTCGAA 1 cut(s) 422
Bsp1286I GDGCHC 1 cut(s) 582
Bsp143I GATC 7 cut(s) 15, 202, 219, 223, 227, 340, 492
BspACI CCGC 1 cut(s) 242
BspANI GGCC 1 cut(s) 405
BspDI ATCGAT 2 cut(s) 222, 226
BspFNI CGCG 1 cut(s) 486
BspLI GGNNCC 1 cut(s) 443
BspMI ACCTGC 1 cut(s) 552
BspT104I TTCGAA 1 cut(s) 422
BsrI ACTGG 1 cut(s) 798
BssECI CCNNGG 4 cut(s) 400, 406, 477, 760
BssMI GATC 7 cut(s) 15, 202, 219, 223, 227, 340, 492
BssNI GRCGYC 1 cut(s) 271
BssSI CACGAG 1 cut(s) 347
BssT1I CCWWGG 3 cut(s) 400, 406, 477
Bst2BI CACGAG 1 cut(s) 347
Bst2UI CCWGG 2 cut(s) 698, 762
Bst4CI ACNGT 1 cut(s) 209
Bst6I CTCTTC 1 cut(s) 188
BstACI GRCGYC 1 cut(s) 271
BstBAI YACGTR 1 cut(s) 612
BstBI TTCGAA 1 cut(s) 422
BstC8I GCNNGC 1 cut(s) 306
BstDEI CTNAG 1 cut(s) 29
BstFNI CGCG 1 cut(s) 486
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 7 cut(s) 18, 205, 222, 226, 230, 343, 495
BstMAI GTCTC 1 cut(s) 244
BstMBI GATC 7 cut(s) 15, 202, 219, 223, 227, 340, 492
BstMCI CGRYCG 4 cut(s) 222, 226, 230, 495
BstMWI GCNNNNNNNGC 1 cut(s) 497
BstNI CCWGG 2 cut(s) 698, 762
BstSCI CCNGG 3 cut(s) 234, 696, 760
BstUI CGCG 1 cut(s) 486
BstV1I GCAGC 1 cut(s) 368
Bsu15I ATCGAT 2 cut(s) 222, 226
BsuRI GGCC 1 cut(s) 405
BsuTUI ATCGAT 2 cut(s) 222, 226
BtsIMutI CAGTG 1 cut(s) 538
BveI ACCTGC 1 cut(s) 552
Cac8I GCNNGC 1 cut(s) 306
CfoI GCGC 1 cut(s) 7
Cfr13I GGNCC 2 cut(s) 232, 637
ClaI ATCGAT 2 cut(s) 222, 226
CpoI CGGWCCG 1 cut(s) 232
Csp6I GTAC 3 cut(s) 10, 572, 616
CspI CGGWCCG 1 cut(s) 232
CviAII CATG 1 cut(s) 595
CviJI RGCY 8 cut(s) 63, 188, 245, 405, 442, 500, 667, 798
CviKI_1 RGCY 8 cut(s) 63, 188, 245, 405, 442, 500, 667, 798
CviQI GTAC 3 cut(s) 10, 572, 616
DdeI CTNAG 1 cut(s) 29
DpnI GATC 7 cut(s) 17, 204, 221, 225, 229, 342, 494
DpnII GATC 7 cut(s) 15, 202, 219, 223, 227, 340, 492
DriI GACNNNNNGTC 1 cut(s) 257
EaeI YGGCCR 1 cut(s) 403
Eam1104I CTCTTC 1 cut(s) 188
Eam1105I GACNNNNNGTC 1 cut(s) 257
EarI CTCTTC 1 cut(s) 188
Eco130I CCWWGG 3 cut(s) 400, 406, 477
Eco47I GGWCC 2 cut(s) 232, 637
Eco88I CYCGRG 2 cut(s) 281, 299
EcoRII CCWGG 2 cut(s) 696, 760
EcoT14I CCWWGG 3 cut(s) 400, 406, 477
ErhI CCWWGG 3 cut(s) 400, 406, 477
FaeI CATG 1 cut(s) 598
FaiI YATR 8 cut(s) 56, 81, 567, 585, 591, 596, 722, 767
FatI CATG 1 cut(s) 594
Fnu4HI GCNGC 2 cut(s) 243, 357
Fsp4HI GCNGC 2 cut(s) 243, 357
FspBI CTAG 3 cut(s) 575, 711, 799
GlaI GCGC 1 cut(s) 6
GluI GCNGC 2 cut(s) 243, 357
HaeIII GGCC 1 cut(s) 405
HapII CCGG 1 cut(s) 235
HhaI GCGC 1 cut(s) 7
Hin1I GRCGYC 1 cut(s) 271
Hin1II CATG 1 cut(s) 598
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 1 cut(s) 511
HindII GTYRAC 1 cut(s) 511
HinfI GANTC 6 cut(s) 110, 140, 198, 279, 286, 473
HpaII CCGG 1 cut(s) 235
HphI GGTGA 2 cut(s) 67, 406
Hpy166II GTNNAC 3 cut(s) 397, 511, 618
Hpy188I TCNGA 3 cut(s) 22, 232, 369
Hpy188III TCNNGA 6 cut(s) 49, 126, 262, 283, 299, 388
Hpy8I GTNNAC 3 cut(s) 397, 511, 618
Hpy99I CGWCG 2 cut(s) 273, 276
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 2 cut(s) 271, 611
HpyCH4V TGCA 2 cut(s) 70, 662
HpyF10VI GCNNNNNNNGC 1 cut(s) 497
HpyF3I CTNAG 1 cut(s) 29
HpySE526I ACGT 2 cut(s) 271, 611
Hsp92I GRCGYC 1 cut(s) 271
Hsp92II CATG 1 cut(s) 598
HspAI GCGC 1 cut(s) 5
Kzo9I GATC 7 cut(s) 15, 202, 219, 223, 227, 340, 492
LmnI GCTCC 2 cut(s) 185, 447
Lsp1109I GCAGC 1 cut(s) 368
MaeI CTAG 3 cut(s) 575, 711, 799
MaeII ACGT 2 cut(s) 271, 611
MalI GATC 7 cut(s) 17, 204, 221, 225, 229, 342, 494
MboI GATC 7 cut(s) 15, 202, 219, 223, 227, 340, 492
MboII GAAGA 4 cut(s) 119, 205, 281, 436
MfeI CAATTG 2 cut(s) 41, 309
MhlI GDGCHC 1 cut(s) 582
MlsI TGGCCA 1 cut(s) 405
MluCI AATT 3 cut(s) 41, 146, 309
MluNI TGGCCA 1 cut(s) 405
MlyI GAGTC 2 cut(s) 207, 273
MmeI TCCRAC 2 cut(s) 45, 303
Mox20I TGGCCA 1 cut(s) 405
MscI TGGCCA 1 cut(s) 405
MslI CAYNNNNRTG 1 cut(s) 623
Msp20I TGGCCA 1 cut(s) 405
MspI CCGG 1 cut(s) 235
MspR9I CCNGG 3 cut(s) 236, 698, 762
MunI CAATTG 2 cut(s) 41, 309
MvaI CCWGG 2 cut(s) 698, 762
MvnI CGCG 1 cut(s) 486
MwoI GCNNNNNNNGC 1 cut(s) 497
NciI CCSGG 1 cut(s) 236
NdeII GATC 7 cut(s) 15, 202, 219, 223, 227, 340, 492
NlaIII CATG 1 cut(s) 598
NlaIV GGNNCC 1 cut(s) 443
NspV TTCGAA 1 cut(s) 422
OliI CACNNNNGTG 1 cut(s) 623
PaeR7I CTCGAG 2 cut(s) 281, 299
PfeI GAWTC 4 cut(s) 110, 140, 286, 473
PfoI TCCNGGA 1 cut(s) 696
PkrI GCNGC 2 cut(s) 244, 358
Ple19I CGATCG 4 cut(s) 222, 226, 230, 495
PleI GAGTC 2 cut(s) 206, 273
PpsI GAGTC 2 cut(s) 206, 273
Ppu21I YACGTR 1 cut(s) 612
PsiI TTATAA 1 cut(s) 56
Psp6I CCWGG 2 cut(s) 696, 760
PspGI CCWGG 2 cut(s) 696, 760
PspN4I GGNNCC 1 cut(s) 443
PspPI GGNCC 2 cut(s) 232, 637
PvuI CGATCG 4 cut(s) 222, 226, 230, 495
RsaI GTAC 3 cut(s) 11, 573, 617
RsaNI GTAC 3 cut(s) 10, 572, 616
RseI CAYNNNNRTG 1 cut(s) 623
Rsr2I CGGWCCG 1 cut(s) 232
RsrII CGGWCCG 1 cut(s) 232
SatI GCNGC 2 cut(s) 243, 357
Sau3AI GATC 7 cut(s) 15, 202, 219, 223, 227, 340, 492
Sau96I GGNCC 2 cut(s) 232, 637
ScaI AGTACT 2 cut(s) 11, 573
SchI GAGTC 2 cut(s) 207, 273
ScrFI CCNGG 3 cut(s) 236, 698, 762
SduI GDGCHC 1 cut(s) 582
Sfr274I CTCGAG 2 cut(s) 281, 299
SfuI TTCGAA 1 cut(s) 422
SinI GGWCC 2 cut(s) 232, 637
SlaI CTCGAG 2 cut(s) 281, 299
SmiMI CAYNNNNRTG 1 cut(s) 623
SmlI CTYRAG 3 cut(s) 281, 299, 646
SmoI CTYRAG 3 cut(s) 281, 299, 646
SpeI ACTAGT 1 cut(s) 574
Sse9I AATT 3 cut(s) 41, 146, 309
SsiI CCGC 1 cut(s) 242
SspI AATATT 1 cut(s) 784
SspMI CTAG 3 cut(s) 575, 711, 799
StyD4I CCNGG 3 cut(s) 234, 696, 760
StyI CCWWGG 3 cut(s) 400, 406, 477
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 2 cut(s) 274, 614
TasI AATT 3 cut(s) 41, 146, 309
TatI WGTACW 2 cut(s) 9, 571
TauI GCSGC 1 cut(s) 245
TfiI GAWTC 4 cut(s) 110, 140, 286, 473
TscAI CASTG 1 cut(s) 538
TseI GCWGC 1 cut(s) 356
TspDTI ATGAA 1 cut(s) 782
TspRI CASTG 1 cut(s) 538
VpaK11BI GGWCC 2 cut(s) 232, 637
XapI RAATTY 1 cut(s) 146
XhoI CTCGAG 2 cut(s) 281, 299
XspI CTAG 3 cut(s) 575, 711, 799
ZraI GACGTC 1 cut(s) 272
ZrmI AGTACT 2 cut(s) 11, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.