AT-rich interactive domain-containing protein
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr3g0456051 |
| rosa_roxburghii | Rroxscaffold_2G00113030 Rroxscaffold_3G00272120 Rroxscaffold_7G00172370 |
| rosa_rugosa | Rorug05G0468100 |
| rosa_samantha | Rh4BG009500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 2 cut(s) | 362, 486 |
| AfaI | GTAC | 2 cut(s) | 397, 426 |
| AflIII | ACRYGT | 1 cut(s) | 565 |
| AgsI | TTSAA | 2 cut(s) | 485, 670 |
| AleI | CACNNNNGTG | 1 cut(s) | 108 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 153, 185 |
| AluBI | AGCT | 3 cut(s) | 85, 94, 222 |
| AluI | AGCT | 3 cut(s) | 85, 94, 222 |
| Alw26I | GTCTC | 1 cut(s) | 592 |
| AoxI | GGCC | 1 cut(s) | 21 |
| ApoI | RAATTY | 2 cut(s) | 362, 486 |
| AsuHPI | GGTGA | 4 cut(s) | 95, 125, 190, 380 |
| AsuII | TTCGAA | 1 cut(s) | 626 |
| BauI | CACGAG | 1 cut(s) | 130 |
| BccI | CCATC | 2 cut(s) | 64, 371 |
| BceAI | ACGGC | 1 cut(s) | 266 |
| BciVI | GTATCC | 1 cut(s) | 52 |
| BcoDI | GTCTC | 1 cut(s) | 592 |
| BfaI | CTAG | 2 cut(s) | 219, 264 |
| BfmI | CTRYAG | 1 cut(s) | 543 |
| BfuI | GTATCC | 1 cut(s) | 52 |
| BmsI | GCATC | 2 cut(s) | 305, 361 |
| Bpu14I | TTCGAA | 1 cut(s) | 626 |
| BpuEI | CTTGAG | 1 cut(s) | 488 |
| BsaBI | GATNNNNATC | 1 cut(s) | 381 |
| BsaXI | ACNNNNNCTCC | 3 cut(s) | 153, 183, 669 |
| Bse8I | GATNNNNATC | 1 cut(s) | 381 |
| BseGI | GGATG | 1 cut(s) | 56 |
| BseJI | GATNNNNATC | 1 cut(s) | 381 |
| Bsh1285I | CGRYCG | 1 cut(s) | 252 |
| BshFI | GGCC | 1 cut(s) | 23 |
| BsiEI | CGRYCG | 1 cut(s) | 252 |
| BsiSI | CCGG | 2 cut(s) | 153, 238 |
| BsmAI | GTCTC | 1 cut(s) | 592 |
| BsnI | GGCC | 1 cut(s) | 23 |
| Bsp119I | TTCGAA | 1 cut(s) | 626 |
| Bsp1407I | TGTACA | 1 cut(s) | 424 |
| Bsp143I | GATC | 4 cut(s) | 66, 242, 249, 607 |
| BspANI | GGCC | 1 cut(s) | 23 |
| BspMAI | CTGCAG | 1 cut(s) | 547 |
| BspT104I | TTCGAA | 1 cut(s) | 626 |
| BsrGI | TGTACA | 1 cut(s) | 424 |
| BssMI | GATC | 4 cut(s) | 66, 242, 249, 607 |
| BssSI | CACGAG | 1 cut(s) | 130 |
| Bst2BI | CACGAG | 1 cut(s) | 130 |
| Bst4CI | ACNGT | 3 cut(s) | 317, 412, 685 |
| Bst6I | CTCTTC | 2 cut(s) | 3, 626 |
| BstAUI | TGTACA | 1 cut(s) | 424 |
| BstBI | TTCGAA | 1 cut(s) | 626 |
| BstF5I | GGATG | 1 cut(s) | 56 |
| BstKTI | GATC | 4 cut(s) | 69, 245, 252, 610 |
| BstMAI | GTCTC | 1 cut(s) | 592 |
| BstMBI | GATC | 4 cut(s) | 66, 242, 249, 607 |
| BstMCI | CGRYCG | 1 cut(s) | 252 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 91 |
| BstNSI | RCATGY | 1 cut(s) | 569 |
| BstSFI | CTRYAG | 1 cut(s) | 543 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 661 |
| BsuI | GTATCC | 1 cut(s) | 52 |
| BsuRI | GGCC | 1 cut(s) | 23 |
| BtsCI | GGATG | 1 cut(s) | 56 |
| BtsIMutI | CAGTG | 1 cut(s) | 690 |
| Csp6I | GTAC | 2 cut(s) | 396, 425 |
| CviAII | CATG | 4 cut(s) | 157, 286, 538, 566 |
| CviJI | RGCY | 7 cut(s) | 23, 85, 94, 146, 222, 267, 637 |
| CviKI_1 | RGCY | 7 cut(s) | 23, 85, 94, 146, 222, 267, 637 |
| CviQI | GTAC | 2 cut(s) | 396, 425 |
| DpnI | GATC | 4 cut(s) | 68, 244, 251, 609 |
| DpnII | GATC | 4 cut(s) | 66, 242, 249, 607 |
| Eam1104I | CTCTTC | 2 cut(s) | 3, 626 |
| EarI | CTCTTC | 2 cut(s) | 3, 626 |
| Eco32I | GATATC | 1 cut(s) | 305 |
| EcoRV | GATATC | 1 cut(s) | 305 |
| FaeI | CATG | 4 cut(s) | 160, 289, 541, 569 |
| FatI | CATG | 4 cut(s) | 156, 285, 537, 565 |
| FauNDI | CATATG | 1 cut(s) | 523 |
| FokI | GGATG | 1 cut(s) | 43 |
| FspBI | CTAG | 2 cut(s) | 219, 264 |
| HaeIII | GGCC | 1 cut(s) | 23 |
| HapII | CCGG | 2 cut(s) | 153, 238 |
| Hin1II | CATG | 4 cut(s) | 160, 289, 541, 569 |
| HinfI | GANTC | 2 cut(s) | 165, 212 |
| HpaII | CCGG | 2 cut(s) | 153, 238 |
| HphI | GGTGA | 4 cut(s) | 95, 125, 190, 380 |
| Hpy166II | GTNNAC | 1 cut(s) | 425 |
| Hpy188III | TCNNGA | 1 cut(s) | 300 |
| Hpy8I | GTNNAC | 1 cut(s) | 425 |
| HpyAV | CCTTC | 1 cut(s) | 195 |
| HpyCH4III | ACNGT | 3 cut(s) | 317, 412, 685 |
| HpyCH4V | TGCA | 2 cut(s) | 296, 545 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 91 |
| Hsp92II | CATG | 4 cut(s) | 160, 289, 541, 569 |
| Kzo9I | GATC | 4 cut(s) | 66, 242, 249, 607 |
| LmnI | GCTCC | 2 cut(s) | 99, 677 |
| LpnPI | CCDG | 5 cut(s) | 104, 166, 214, 251, 282 |
| LweI | GCATC | 2 cut(s) | 305, 361 |
| MaeI | CTAG | 2 cut(s) | 219, 264 |
| MaeIII | GTNAC | 1 cut(s) | 685 |
| MalI | GATC | 4 cut(s) | 68, 244, 251, 609 |
| MboI | GATC | 4 cut(s) | 66, 242, 249, 607 |
| MboII | GAAGA | 6 cut(s) | 20, 61, 237, 268, 640, 643 |
| MluCI | AATT | 5 cut(s) | 46, 309, 362, 486, 659 |
| MlyI | GAGTC | 2 cut(s) | 159, 206 |
| MnlI | CCTC | 6 cut(s) | 13, 137, 155, 183, 204, 627 |
| MseI | TTAA | 2 cut(s) | 312, 321 |
| MslI | CAYNNNNRTG | 2 cut(s) | 108, 522 |
| MspI | CCGG | 2 cut(s) | 153, 238 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 91 |
| NdeI | CATATG | 1 cut(s) | 523 |
| NdeII | GATC | 4 cut(s) | 66, 242, 249, 607 |
| NlaIII | CATG | 4 cut(s) | 160, 289, 541, 569 |
| NmuCI | GTSAC | 1 cut(s) | 685 |
| NspI | RCATGY | 1 cut(s) | 569 |
| NspV | TTCGAA | 1 cut(s) | 626 |
| OliI | CACNNNNGTG | 1 cut(s) | 108 |
| PciI | ACATGT | 1 cut(s) | 565 |
| Ple19I | CGATCG | 1 cut(s) | 252 |
| PleI | GAGTC | 2 cut(s) | 159, 206 |
| PpsI | GAGTC | 2 cut(s) | 159, 206 |
| PscI | ACATGT | 1 cut(s) | 565 |
| PstI | CTGCAG | 1 cut(s) | 547 |
| PvuI | CGATCG | 1 cut(s) | 252 |
| RsaI | GTAC | 2 cut(s) | 397, 426 |
| RsaNI | GTAC | 2 cut(s) | 396, 425 |
| RseI | CAYNNNNRTG | 2 cut(s) | 108, 522 |
| SaqAI | TTAA | 2 cut(s) | 312, 321 |
| Sau3AI | GATC | 4 cut(s) | 66, 242, 249, 607 |
| SchI | GAGTC | 2 cut(s) | 159, 206 |
| SetI | ASST | 4 cut(s) | 87, 96, 224, 461 |
| SfaNI | GCATC | 2 cut(s) | 305, 361 |
| SfcI | CTRYAG | 1 cut(s) | 543 |
| SfuI | TTCGAA | 1 cut(s) | 626 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 108, 522 |
| SmlI | CTYRAG | 1 cut(s) | 503 |
| SmoI | CTYRAG | 1 cut(s) | 503 |
| Sse9I | AATT | 5 cut(s) | 46, 309, 362, 486, 659 |
| SspMI | CTAG | 2 cut(s) | 219, 264 |
| TaaI | ACNGT | 3 cut(s) | 317, 412, 685 |
| TaqI | TCGA | 5 cut(s) | 34, 215, 248, 252, 626 |
| TasI | AATT | 5 cut(s) | 46, 309, 362, 486, 659 |
| TatI | WGTACW | 1 cut(s) | 424 |
| Tru1I | TTAA | 2 cut(s) | 312, 321 |
| Tru9I | TTAA | 2 cut(s) | 312, 321 |
| TscAI | CASTG | 1 cut(s) | 690 |
| TseFI | GTSAC | 1 cut(s) | 685 |
| Tsp45I | GTSAC | 1 cut(s) | 685 |
| TspDTI | ATGAA | 2 cut(s) | 67, 353 |
| TspRI | CASTG | 1 cut(s) | 690 |
| XapI | RAATTY | 2 cut(s) | 362, 486 |
| XceI | RCATGY | 1 cut(s) | 569 |
| XspI | CTAG | 2 cut(s) | 219, 264 |