Rroxscaffold_2G00122470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0029773
Physical Location & Seq
Forward (+)
55598716 .. 55599277
562 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00122470.1

Sequence Viewer

Length: 297 bp
ATGGAGAGGGATTTTATCGACTCCGAGATGGAAATCAATCCTCCCATGTTGTTGGCATGTCTCTCTCAGTCAATGCATAAGGTAGGTGTCCCAGGTGCAAAAGCTCGTGTCCCAGGTGTTTGGCCAGGTGATTTCAAGTTGGATGATTTAAGCGCTCATGTGACGTTGTACAATATTTTCGAGAGATTCAGTAGCAATCAAATTTTGTTTTATGACGAAACAGGAAAGCTGATCACCAGTTATCTCTTCAAGGGAAGAGAAACCAAGTCCTGCATAGGACAAATTGTTACAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

98

Amino Acids

11.02

Weight (kDa)

5.57

Isoelectric Point (pI)

43.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0029773)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0121301
rosa_roxburghii Rroxscaffold_2G00122470

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 122
AcsI RAATTY 1 cut(s) 201
AfaI GTAC 1 cut(s) 170
AfeI AGCGCT 1 cut(s) 154
AgsI TTSAA 2 cut(s) 136, 250
AjnI CCWGG 3 cut(s) 91, 112, 124
AluBI AGCT 2 cut(s) 104, 229
AluI AGCT 2 cut(s) 104, 229
Alw26I GTCTC 1 cut(s) 65
Aor51HI AGCGCT 1 cut(s) 154
AoxI GGCC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 201
AspLEI GCGC 1 cut(s) 155
AsuHPI GGTGA 2 cut(s) 140, 226
BalI TGGCCA 1 cut(s) 124
BauI CACGAG 1 cut(s) 105
BccI CCATC 1 cut(s) 22
BciT130I CCWGG 3 cut(s) 93, 114, 126
BclI TGATCA 1 cut(s) 231
BcoDI GTCTC 1 cut(s) 65
BfoI RGCGCY 1 cut(s) 156
Bme1390I CCNGG 3 cut(s) 93, 114, 126
BmrFI CCNGG 3 cut(s) 93, 114, 126
BsaBI GATNNNNATC 1 cut(s) 32
BsaJI CCNNGG 2 cut(s) 91, 112
Bse1I ACTGG 1 cut(s) 237
Bse8I GATNNNNATC 1 cut(s) 32
BseBI CCWGG 3 cut(s) 93, 114, 126
BseDI CCNNGG 2 cut(s) 91, 112
BseGI GGATG 1 cut(s) 148
BseJI GATNNNNATC 1 cut(s) 32
BseMII CTCAG 1 cut(s) 80
BseNI ACTGG 1 cut(s) 237
BshFI GGCC 1 cut(s) 124
BslFI GGGAC 2 cut(s) 74, 95
BsmAI GTCTC 1 cut(s) 65
BsmFI GGGAC 2 cut(s) 74, 95
BsnI GGCC 1 cut(s) 124
Bsp1407I TGTACA 1 cut(s) 168
Bsp143I GATC 1 cut(s) 231
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 79
BsrGI TGTACA 1 cut(s) 168
BsrI ACTGG 1 cut(s) 237
BssECI CCNNGG 2 cut(s) 91, 112
BssMI GATC 1 cut(s) 231
BssSI CACGAG 1 cut(s) 105
Bst2BI CACGAG 1 cut(s) 105
Bst2UI CCWGG 3 cut(s) 93, 114, 126
Bst6I CTCTTC 2 cut(s) 250, 251
BstAUI TGTACA 1 cut(s) 168
BstDEI CTNAG 1 cut(s) 66
BstF5I GGATG 1 cut(s) 148
BstH2I RGCGCY 1 cut(s) 156
BstHHI GCGC 1 cut(s) 155
BstKTI GATC 1 cut(s) 234
BstMAI GTCTC 1 cut(s) 65
BstMBI GATC 1 cut(s) 231
BstNI CCWGG 3 cut(s) 93, 114, 126
BstNSI RCATGY 1 cut(s) 60
BstSCI CCNGG 3 cut(s) 91, 112, 124
BstXI CCANNNNNNTGG 2 cut(s) 52, 120
BsuRI GGCC 1 cut(s) 124
BtsCI GGATG 1 cut(s) 148
CfoI GCGC 1 cut(s) 155
Csp6I GTAC 1 cut(s) 169
CviAII CATG 3 cut(s) 46, 57, 158
CviJI RGCY 4 cut(s) 104, 124, 229, 293
CviKI_1 RGCY 4 cut(s) 104, 124, 229, 293
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 1 cut(s) 66
DpnI GATC 1 cut(s) 233
DpnII GATC 1 cut(s) 231
EaeI YGGCCR 1 cut(s) 122
Eam1104I CTCTTC 2 cut(s) 250, 251
EarI CTCTTC 2 cut(s) 250, 251
Eco47III AGCGCT 1 cut(s) 154
EcoRII CCWGG 3 cut(s) 91, 112, 124
EcoT22I ATGCAT 1 cut(s) 78
FaeI CATG 3 cut(s) 49, 60, 161
FaiI YATR 6 cut(s) 47, 58, 78, 159, 213, 275
FaqI GGGAC 2 cut(s) 74, 95
FatI CATG 3 cut(s) 45, 56, 157
FbaI TGATCA 1 cut(s) 231
FokI GGATG 1 cut(s) 155
GlaI GCGC 1 cut(s) 154
HaeII RGCGCY 1 cut(s) 156
HaeIII GGCC 1 cut(s) 124
HhaI GCGC 1 cut(s) 155
Hin1II CATG 3 cut(s) 49, 60, 161
Hin6I GCGC 1 cut(s) 153
HinP1I GCGC 1 cut(s) 153
HinfI GANTC 2 cut(s) 20, 186
HphI GGTGA 2 cut(s) 140, 226
Hpy188I TCNGA 1 cut(s) 25
Hpy188III TCNNGA 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 164
HpyCH4V TGCA 3 cut(s) 76, 98, 273
HpyF3I CTNAG 1 cut(s) 66
HpySE526I ACGT 1 cut(s) 164
Hsp92II CATG 3 cut(s) 49, 60, 161
HspAI GCGC 1 cut(s) 153
Ksp22I TGATCA 1 cut(s) 231
Kzo9I GATC 1 cut(s) 231
LpnPI CCDG 9 cut(s) 78, 99, 105, 111, 126, 138, 207, 250, 283
MaeII ACGT 1 cut(s) 164
MaeIII GTNAC 2 cut(s) 160, 286
MalI GATC 1 cut(s) 233
MboI GATC 1 cut(s) 231
MboII GAAGA 2 cut(s) 238, 267
MlsI TGGCCA 1 cut(s) 124
MluCI AATT 2 cut(s) 201, 282
MluNI TGGCCA 1 cut(s) 124
MlyI GAGTC 1 cut(s) 14
MmeI TCCRAC 1 cut(s) 120
MnlI CCTC 1 cut(s) 51
Mox20I TGGCCA 1 cut(s) 124
Mph1103I ATGCAT 1 cut(s) 78
MscI TGGCCA 1 cut(s) 124
MseI TTAA 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 124
MspR9I CCNGG 3 cut(s) 93, 114, 126
MvaI CCWGG 3 cut(s) 93, 114, 126
NdeII GATC 1 cut(s) 231
NlaIII CATG 3 cut(s) 49, 60, 161
NmuCI GTSAC 1 cut(s) 160
NsiI ATGCAT 1 cut(s) 78
NspI RCATGY 1 cut(s) 60
PfeI GAWTC 1 cut(s) 186
PleI GAGTC 1 cut(s) 14
PpsI GAGTC 1 cut(s) 14
Psp6I CCWGG 3 cut(s) 91, 112, 124
PspGI CCWGG 3 cut(s) 91, 112, 124
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 1 cut(s) 149
Sau3AI GATC 1 cut(s) 231
SchI GAGTC 1 cut(s) 14
ScrFI CCNGG 3 cut(s) 93, 114, 126
SetI ASST 8 cut(s) 84, 88, 97, 106, 118, 130, 167, 231
Sse9I AATT 2 cut(s) 201, 282
SspI AATATT 1 cut(s) 175
StyD4I CCNGG 3 cut(s) 91, 112, 124
TaiI ACGT 1 cut(s) 167
TaqI TCGA 2 cut(s) 18, 180
TasI AATT 2 cut(s) 201, 282
TatI WGTACW 1 cut(s) 168
TfiI GAWTC 1 cut(s) 186
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
XapI RAATTY 1 cut(s) 201
XceI RCATGY 1 cut(s) 60
Zsp2I ATGCAT 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.