Rroxscaffold_2G00124950

UPF0235 protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0022686
Physical Location & Seq
Reverse (-)
59508976 .. 59515251
6276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00124950.1

Sequence Viewer

Length: 468 bp
ATGGAGGACAACCACCAAAAAAGGTCCACCAAGGCCCATCGGACCGATCCGGTCCAAGTCCACCTACCCGCCTCCCTATCGTACAAACCGGCCACGACAAGCCTCTCTTCGTCCGTCGCACTCCGCCGCAACCTCGCCTCCCACGATCCTTTTAATTGGAGAAGTACGAGTCACCCCTGCTCGGCCATAAAAACGCATTTCTCAGTTACTGTAAAACTGGAAAATCTGGAAAAGAAGGGGAGTGACGGACAATCTTCACCGGAAAAACGCAGGCAACTTTCCGACTCCTCATCAGCGCTTATCGGCCACCGCATTTCGGCGGCGCGTGAACTGGTTTTAGGTGTAACAAGAAGGCAGGTTTCTATTGGATGTGGCTCTAAATCAAGAGACAAGGTTGTTATTGTAGAGGAGATGACTCTACAAAGTGTTTTTGACATTCCGGATAGAGCTTCAAAGTGCAGCGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF167

Protein Analysis

155

Amino Acids

17.04

Weight (kDa)

9.89

Isoelectric Point (pI)

56.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0022686)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr2g0118341
rosa_roxburghii Rroxscaffold_2G00124950 Rroxscaffold_2G00125620
rosa_samantha Rh2AG274000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 346
AccII CGCG 1 cut(s) 325
AccIII TCCGGA 1 cut(s) 439
AciI CCGC 5 cut(s) 69, 124, 127, 310, 320
AclWI GGATC 2 cut(s) 41, 140
AcoI YGGCCR 3 cut(s) 90, 183, 304
AfaI GTAC 2 cut(s) 83, 166
AfeI AGCGCT 1 cut(s) 297
AfiI CCNNNNNNNGG 2 cut(s) 181, 316
AgsI TTSAA 1 cut(s) 453
AluBI AGCT 1 cut(s) 449
AluI AGCT 1 cut(s) 449
Alw26I GTCTC 1 cut(s) 381
AlwI GGATC 2 cut(s) 41, 140
AlwNI CAGNNNCTG 1 cut(s) 209
Aor13HI TCCGGA 1 cut(s) 439
Aor51HI AGCGCT 1 cut(s) 297
AoxI GGCC 4 cut(s) 33, 90, 183, 304
ApeKI GCWGC 1 cut(s) 459
AspLEI GCGC 3 cut(s) 298, 325, 464
AspS9I GGNCC 4 cut(s) 24, 34, 42, 52
AsuHPI GGTGA 2 cut(s) 164, 249
AvaII GGWCC 3 cut(s) 24, 42, 52
BccI CCATC 1 cut(s) 45
BcoDI GTCTC 1 cut(s) 381
BfoI RGCGCY 1 cut(s) 299
BfuAI ACCTGC 1 cut(s) 346
BisI GCNGC 3 cut(s) 127, 321, 460
BlsI GCNGC 3 cut(s) 128, 322, 461
Bme18I GGWCC 3 cut(s) 24, 42, 52
BmgT120I GGNCC 4 cut(s) 24, 34, 42, 52
BsaJI CCNNGG 1 cut(s) 30
BsaWI WCCGGW 3 cut(s) 49, 259, 439
BsaXI ACNNNNNCTCC 2 cut(s) 122, 152
Bsc4I CCNNNNNNNGG 2 cut(s) 181, 316
Bse118I RCCGGY 1 cut(s) 88
Bse1I ACTGG 2 cut(s) 222, 336
BseAI TCCGGA 1 cut(s) 439
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 1 cut(s) 374
BseLI CCNNNNNNNGG 2 cut(s) 181, 316
BseMII CTCAG 1 cut(s) 216
BseNI ACTGG 2 cut(s) 222, 336
BseRI GAGGAG 2 cut(s) 277, 422
Bsh1236I CGCG 1 cut(s) 325
BshFI GGCC 4 cut(s) 35, 92, 185, 306
BsiSI CCGG 4 cut(s) 50, 89, 260, 440
BslI CCNNNNNNNGG 2 cut(s) 181, 316
BsmAI GTCTC 1 cut(s) 381
BsnI GGCC 4 cut(s) 35, 92, 185, 306
Bsp13I TCCGGA 1 cut(s) 439
Bsp143I GATC 2 cut(s) 46, 145
BspACI CCGC 5 cut(s) 69, 124, 127, 310, 320
BspANI GGCC 4 cut(s) 35, 92, 185, 306
BspCNI CTCAG 1 cut(s) 215
BspEI TCCGGA 1 cut(s) 439
BspFNI CGCG 1 cut(s) 325
BspMI ACCTGC 1 cut(s) 346
BspPI GGATC 2 cut(s) 41, 140
BsrFI RCCGGY 1 cut(s) 88
BsrI ACTGG 2 cut(s) 222, 336
BssAI RCCGGY 1 cut(s) 88
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 2 cut(s) 46, 145
BssT1I CCWWGG 1 cut(s) 30
Bst4CI ACNGT 1 cut(s) 211
Bst6I CTCTTC 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 202
BstF5I GGATG 1 cut(s) 374
BstFNI CGCG 1 cut(s) 325
BstH2I RGCGCY 1 cut(s) 299
BstHHI GCGC 3 cut(s) 298, 325, 464
BstKTI GATC 2 cut(s) 49, 148
BstMAI GTCTC 1 cut(s) 381
BstMBI GATC 2 cut(s) 46, 145
BstUI CGCG 1 cut(s) 325
BsuRI GGCC 4 cut(s) 35, 92, 185, 306
BtsCI GGATG 1 cut(s) 374
BveI ACCTGC 1 cut(s) 346
Cac8I GCNNGC 1 cut(s) 272
CaiI CAGNNNCTG 1 cut(s) 209
CfoI GCGC 3 cut(s) 298, 325, 464
Cfr10I RCCGGY 1 cut(s) 88
Cfr13I GGNCC 4 cut(s) 24, 34, 42, 52
CpoI CGGWCCG 1 cut(s) 42
Csp6I GTAC 2 cut(s) 82, 165
CspI CGGWCCG 1 cut(s) 42
CviJI RGCY 7 cut(s) 35, 92, 102, 185, 306, 375, 449
CviKI_1 RGCY 7 cut(s) 35, 92, 102, 185, 306, 375, 449
CviQI GTAC 2 cut(s) 82, 165
DdeI CTNAG 1 cut(s) 202
DpnI GATC 2 cut(s) 48, 147
DpnII GATC 2 cut(s) 46, 145
EaeI YGGCCR 3 cut(s) 90, 183, 304
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
EciI GGCGGA 1 cut(s) 113
Eco130I CCWWGG 1 cut(s) 30
Eco47I GGWCC 3 cut(s) 24, 42, 52
Eco47III AGCGCT 1 cut(s) 297
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
FaiI YATR 2 cut(s) 188, 466
FalI AAGNNNNNCTT 2 cut(s) 91, 123
FauI CCCGC 1 cut(s) 76
Fnu4HI GCNGC 3 cut(s) 127, 321, 460
FokI GGATG 1 cut(s) 381
Fsp4HI GCNGC 3 cut(s) 127, 321, 460
GlaI GCGC 3 cut(s) 297, 324, 463
GluI GCNGC 3 cut(s) 127, 321, 460
HaeII RGCGCY 1 cut(s) 299
HaeIII GGCC 4 cut(s) 35, 92, 185, 306
HapII CCGG 4 cut(s) 50, 89, 260, 440
HhaI GCGC 3 cut(s) 298, 325, 464
Hin6I GCGC 3 cut(s) 296, 323, 462
HinP1I GCGC 3 cut(s) 296, 323, 462
HinfI GANTC 3 cut(s) 169, 284, 415
HpaII CCGG 4 cut(s) 50, 89, 260, 440
HphI GGTGA 2 cut(s) 164, 249
Hpy166II GTNNAC 3 cut(s) 27, 61, 329
Hpy188I TCNGA 2 cut(s) 42, 283
Hpy188III TCNNGA 3 cut(s) 227, 384, 440
Hpy8I GTNNAC 3 cut(s) 27, 61, 329
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 2 cut(s) 229, 345
HpyCH4III ACNGT 1 cut(s) 211
HpyCH4V TGCA 1 cut(s) 459
HpyF3I CTNAG 1 cut(s) 202
HspAI GCGC 3 cut(s) 296, 323, 462
Kpn2I TCCGGA 1 cut(s) 439
Kzo9I GATC 2 cut(s) 46, 145
MaeIII GTNAC 4 cut(s) 170, 205, 242, 343
MalI GATC 2 cut(s) 48, 147
MboI GATC 2 cut(s) 46, 145
MboII GAAGA 2 cut(s) 99, 246
MluCI AATT 1 cut(s) 154
MlyI GAGTC 3 cut(s) 178, 278, 409
MmeI TCCRAC 1 cut(s) 306
MnlI CCTC 6 cut(s) 82, 113, 143, 148, 298, 400
MroI TCCGGA 1 cut(s) 439
MseI TTAA 1 cut(s) 153
MspI CCGG 4 cut(s) 50, 89, 260, 440
MvnI CGCG 1 cut(s) 325
NdeII GATC 2 cut(s) 46, 145
NmeAIII GCCGAG 1 cut(s) 161
NmuCI GTSAC 2 cut(s) 170, 242
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PkrI GCNGC 3 cut(s) 128, 322, 461
PleI GAGTC 3 cut(s) 177, 278, 409
PpsI GAGTC 3 cut(s) 177, 278, 409
PspPI GGNCC 4 cut(s) 24, 34, 42, 52
PstNI CAGNNNCTG 1 cut(s) 209
RsaI GTAC 2 cut(s) 83, 166
RsaNI GTAC 2 cut(s) 82, 165
Rsr2I CGGWCCG 1 cut(s) 42
RsrII CGGWCCG 1 cut(s) 42
SaqAI TTAA 1 cut(s) 153
SatI GCNGC 3 cut(s) 127, 321, 460
Sau3AI GATC 2 cut(s) 46, 145
Sau96I GGNCC 4 cut(s) 24, 34, 42, 52
SchI GAGTC 3 cut(s) 178, 278, 409
SetI ASST 7 cut(s) 26, 66, 135, 343, 360, 396, 451
SinI GGWCC 3 cut(s) 24, 42, 52
Sse9I AATT 1 cut(s) 154
SsiI CCGC 5 cut(s) 69, 124, 127, 310, 320
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 1 cut(s) 211
TaqII GACCGA 1 cut(s) 59
TasI AATT 1 cut(s) 154
TauI GCSGC 2 cut(s) 129, 323
Tru1I TTAA 1 cut(s) 153
Tru9I TTAA 1 cut(s) 153
TseFI GTSAC 2 cut(s) 170, 242
TseI GCWGC 1 cut(s) 459
Tsp45I GTSAC 2 cut(s) 170, 242
TspGWI ACGGA 2 cut(s) 103, 261
VpaK11BI GGWCC 3 cut(s) 24, 42, 52
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.