Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0031965

Physical Location & Seq

Genomic Coordinates Reverse (-)

90771603 .. 90787281

Gene Structure 15679 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00154100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

ATGCCTTTGGAGCAGTTCTTTGATGATATGCAAGTTTTGAGAAACTGGTTTTGGGAATCAGCTTCTAGCAGTAGATGTGAACGAACGTTTGGTGCGATGACAAAGCTTGATTTGATGGACAAAGGAACTAACGCTTGGGATGTTATTGAAGGAAGATCTTATCGCCCGCAACATCCTTGGGTTGGAGTTATGAACCGTTCCCAAGCAGATATTAATAAAAATACGGACATGATTGTCGCAAGGCGCAAGGAACATGAGTACTTTGCAACCAGTCCTGACTATGGGCACTTGGCTAATAGAATGGGTTCGAGTACCTTGCTAAACTTCGTGACGAGTTTGAGCCACTTGGAGTCTGTAATTAGGGCTCGTATCACAAGTATCACATCCTTGATTAACAAAAGCATTGATGAACTTGAATCCGAGATGGACCATCTTGGTAGGCCTATAGCCGTTGATGCTTTGGGCATATTGGTAATTGATGAGCAGAGGAGAGGTTGCTTCCAAGAGTACAAAGTTCATGGACCGTTTTATTGCATTAGATCCTCGAAAGAACAAAACAAAGTTATCTATCAAATTTTCAATGAAGAAACCAAAGGAGTGAATCAGATAATTTCTTTTGACTTCACAAAAGAAGAGTTCTATACAACTCCTTACCCGGCCACATTACCAAACTCTGAATCTGAATTGCGGTACTTGAAATTTGTTACTTTGAGAGGATCTGTGGCCATAGTGGATAGTTCATCTGGTACAAATATTGACATATGGGTGATGAAAGACCGCAATAAAAAAGAGTGGATGCGAGAGTACACCATAAATCTCCAAATGCTTGAACTAAATCTTCAAAAAAAAATTCGGATGGCTACTGATTGTGGTGAATGGGAGAATGGCATATATTTCCTATGGGGTGCAACAACATTCTTCTTCAATCTAAGACATGTTCCCGTGAGCTGGGTAAAATGTCCAAATAAGAAGGAGAATATGTGGAGGAATCTGGACGAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000266 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005856 GO:0005886 GO:0005911 GO:0006810 GO:0006950 GO:0006952 GO:0006996 GO:0007005 GO:0008017 GO:0008092 GO:0008150 GO:0009506 GO:0009524 GO:0009605 GO:0009607 GO:0009620 GO:0009987 GO:0010035 GO:0010038 GO:0015631 GO:0016020 GO:0016043 GO:0016192 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0030054 GO:0031090 GO:0042221 GO:0043207 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048285 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0055044 GO:0071840 GO:0071944 GO:0098542 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04072 ko04144 ko04721 ko04961 ko05100 map04072 map04144 map04721 map04961 map05100

Pfam Domains

Protein Families

Dynamin_M Dynamin_N GED

Protein Analysis

334

Amino Acids

39.08

Weight (kDa)

6.21

Isoelectric Point (pI)

41.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dynamin_M	PF01031	44 - 152	3.1e-21	Dynamin central region
FBA_3	PF08268	188 - 279	5.3e-10	F-box associated beta propeller domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0031965)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_2G00154100
rosa_samantha	Rh2DG023200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	233
AciI	CCGC	3 cut(s)	167, 688, 778
AclI	AACGTT	1 cut(s)	86
AclWI	GGATC	2 cut(s)	534, 724
AcoI	YGGCCR	2 cut(s)	657, 723
AcsI	RAATTY	4 cut(s)	573, 698, 849, 998
AfaI	GTAC	6 cut(s)	260, 313, 509, 692, 748, 806
AfiI	CCNNNNNNNGG	3 cut(s)	182, 281, 948
AflIII	ACRYGT	1 cut(s)	934
AgsI	TTSAA	7 cut(s)	149, 416, 580, 697, 830, 842, 925
AjuI	GAANNNNNNNTTGG	6 cut(s)	34, 66, 72, 104, 118, 150
AluBI	AGCT	3 cut(s)	62, 106, 948
AluI	AGCT	3 cut(s)	62, 106, 948
AlwI	GGATC	2 cut(s)	534, 724
AoxI	GGCC	3 cut(s)	440, 657, 723
ApoI	RAATTY	4 cut(s)	573, 698, 849, 998
AseI	ATTAAT	1 cut(s)	213
Asp700I	GAANNNNTTC	1 cut(s)	304
AspLEI	GCGC	1 cut(s)	246
AspS9I	GGNCC	2 cut(s)	427, 521
AsuC2I	CCSGG	1 cut(s)	656
AsuHPI	GGTGA	2 cut(s)	778, 884
AvaII	GGWCC	2 cut(s)	427, 521
BaeGI	GKGCMC	1 cut(s)	288
BalI	TGGCCA	1 cut(s)	725
BanII	GRGCYC	1 cut(s)	367
BccI	CCATC	4 cut(s)	109, 418, 438, 850
BceAI	ACGGC	1 cut(s)	434
BcgI	CGANNNNNNTGC	2 cut(s)	298, 332
BcnI	CCSGG	1 cut(s)	656
BfaI	CTAG	1 cut(s)	66
BfmI	CTRYAG	1 cut(s)	444
BglII	AGATCT	1 cut(s)	155
BmcAI	AGTACT	1 cut(s)	260
Bme1390I	CCNGG	1 cut(s)	656
Bme18I	GGWCC	2 cut(s)	427, 521
BmgT120I	GGNCC	2 cut(s)	427, 521
BmrFI	CCNGG	1 cut(s)	656
BmsI	GCATC	2 cut(s)	445, 786
BpuMI	CCSGG	1 cut(s)	656
BsaJI	CCNNGG	1 cut(s)	176
BsaXI	ACNNNNNCTCC	2 cut(s)	965, 995
Bsc4I	CCNNNNNNNGG	3 cut(s)	182, 281, 948
Bse1I	ACTGG	2 cut(s)	50, 270
BseDI	CCNNGG	1 cut(s)	176
BseGI	GGATG	5 cut(s)	145, 172, 383, 801, 861
BseLI	CCNNNNNNNGG	3 cut(s)	182, 281, 948
BseNI	ACTGG	2 cut(s)	50, 270
BseRI	GAGGAG	1 cut(s)	502
BseSI	GKGCMC	1 cut(s)	288
BseYI	CCCAGC	1 cut(s)	948
BshFI	GGCC	3 cut(s)	442, 659, 725
BsiSI	CCGG	1 cut(s)	656
BslI	CCNNNNNNNGG	3 cut(s)	182, 281, 948
BsnI	GGCC	3 cut(s)	442, 659, 725
Bsp1286I	GDGCHC	2 cut(s)	288, 367
Bsp143I	GATC	3 cut(s)	155, 539, 716
BspACI	CCGC	3 cut(s)	167, 688, 778
BspANI	GGCC	3 cut(s)	442, 659, 725
BspPI	GGATC	2 cut(s)	534, 724
BsrI	ACTGG	2 cut(s)	50, 270
BssECI	CCNNGG	1 cut(s)	176
BssMI	GATC	3 cut(s)	155, 539, 716
BssT1I	CCWWGG	1 cut(s)	176
Bst4CI	ACNGT	2 cut(s)	197, 525
Bst6I	CTCTTC	1 cut(s)	627
BstC8I	GCNNGC	1 cut(s)	167
BstDEI	CTNAG	1 cut(s)	929
BstF5I	GGATG	5 cut(s)	145, 172, 383, 801, 861
BstHHI	GCGC	1 cut(s)	246
BstKTI	GATC	3 cut(s)	158, 542, 719
BstMBI	GATC	3 cut(s)	155, 539, 716
BstMWI	GCNNNNNNNGC	2 cut(s)	10, 455
BstNSI	RCATGY	1 cut(s)	938
BstSCI	CCNGG	1 cut(s)	654
BstSFI	CTRYAG	1 cut(s)	444
BstSLI	GKGCMC	1 cut(s)	288
BstX2I	RGATCY	3 cut(s)	155, 539, 716
BstYI	RGATCY	3 cut(s)	155, 539, 716
BsuRI	GGCC	3 cut(s)	442, 659, 725
BtgZI	GCGATG	1 cut(s)	110
BtsCI	GGATG	5 cut(s)	145, 172, 383, 801, 861
Cac8I	GCNNGC	1 cut(s)	167
CfoI	GCGC	1 cut(s)	246
Cfr13I	GGNCC	2 cut(s)	427, 521
Csp6I	GTAC	6 cut(s)	259, 312, 508, 691, 747, 805
CviAII	CATG	4 cut(s)	229, 254, 518, 935
CviQI	GTAC	6 cut(s)	259, 312, 508, 691, 747, 805
DdeI	CTNAG	1 cut(s)	929
DpnI	GATC	3 cut(s)	157, 541, 718
DpnII	GATC	3 cut(s)	155, 539, 716
DrdI	GACNNNNNNGTC	1 cut(s)	233
DseDI	GACNNNNNNGTC	1 cut(s)	233
EaeI	YGGCCR	2 cut(s)	657, 723
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
Eco130I	CCWWGG	1 cut(s)	176
Eco147I	AGGCCT	1 cut(s)	442
Eco24I	GRGCYC	1 cut(s)	367
Eco47I	GGWCC	2 cut(s)	427, 521
EcoT14I	CCWWGG	1 cut(s)	176
EcoT38I	GRGCYC	1 cut(s)	367
ErhI	CCWWGG	1 cut(s)	176
FaeI	CATG	4 cut(s)	232, 257, 521, 938
FatI	CATG	4 cut(s)	228, 253, 517, 934
FauI	CCCGC	1 cut(s)	174
FauNDI	CATATG	1 cut(s)	761
FokI	GGATG	5 cut(s)	152, 159, 370, 808, 868
FriOI	GRGCYC	1 cut(s)	367
FspBI	CTAG	1 cut(s)	66
GlaI	GCGC	1 cut(s)	245
GsaI	CCCAGC	1 cut(s)	952
HaeIII	GGCC	3 cut(s)	442, 659, 725
HapII	CCGG	1 cut(s)	656
HhaI	GCGC	1 cut(s)	246
Hin1II	CATG	4 cut(s)	232, 257, 521, 938
Hin6I	GCGC	1 cut(s)	244
HinP1I	GCGC	1 cut(s)	244
HindIII	AAGCTT	1 cut(s)	104
HinfI	GANTC	6 cut(s)	56, 350, 416, 601, 677, 988
HpaII	CCGG	1 cut(s)	656
HphI	GGTGA	2 cut(s)	778, 884
Hpy166II	GTNNAC	2 cut(s)	80, 807
Hpy188I	TCNGA	5 cut(s)	421, 606, 676, 682, 855
Hpy188III	TCNNGA	3 cut(s)	275, 328, 992
Hpy8I	GTNNAC	2 cut(s)	80, 807
HpyAV	CCTTC	2 cut(s)	143, 964
HpyCH4III	ACNGT	2 cut(s)	197, 525
HpyCH4IV	ACGT	1 cut(s)	86
HpyCH4V	TGCA	4 cut(s)	31, 266, 534, 908
HpyF10VI	GCNNNNNNNGC	2 cut(s)	10, 455
HpyF3I	CTNAG	1 cut(s)	929
HpySE526I	ACGT	1 cut(s)	86
Hsp92II	CATG	4 cut(s)	232, 257, 521, 938
HspAI	GCGC	1 cut(s)	244
Kzo9I	GATC	3 cut(s)	155, 539, 716
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	7 cut(s)	31, 283, 288, 669, 729, 934, 977
LweI	GCATC	2 cut(s)	445, 786
MaeI	CTAG	1 cut(s)	66
MaeII	ACGT	1 cut(s)	86
MaeIII	GTNAC	2 cut(s)	328, 703
MalI	GATC	3 cut(s)	157, 541, 718
MboI	GATC	3 cut(s)	155, 539, 716
MboII	GAAGA	6 cut(s)	165, 596, 644, 830, 910, 913
MflI	RGATCY	3 cut(s)	155, 539, 716
MhlI	GDGCHC	2 cut(s)	288, 367
MlsI	TGGCCA	1 cut(s)	725
MluCI	AATT	8 cut(s)	357, 474, 573, 609, 683, 698, 849, 998
MluNI	TGGCCA	1 cut(s)	725
MlyI	GAGTC	1 cut(s)	359
MmeI	TCCRAC	1 cut(s)	163
MnlI	CCTC	5 cut(s)	480, 485, 553, 707, 978
Mox20I	TGGCCA	1 cut(s)	725
MroXI	GAANNNNTTC	1 cut(s)	304
MscI	TGGCCA	1 cut(s)	725
MseI	TTAA	2 cut(s)	213, 393
MslI	CAYNNNNRTG	1 cut(s)	764
Msp20I	TGGCCA	1 cut(s)	725
MspI	CCGG	1 cut(s)	656
MspR9I	CCNGG	1 cut(s)	656
MwoI	GCNNNNNNNGC	2 cut(s)	10, 455
NciI	CCSGG	1 cut(s)	656
NdeI	CATATG	1 cut(s)	761
NdeII	GATC	3 cut(s)	155, 539, 716
NlaIII	CATG	4 cut(s)	232, 257, 521, 938
NmuCI	GTSAC	1 cut(s)	328
NspI	RCATGY	1 cut(s)	938
PceI	AGGCCT	1 cut(s)	442
PciI	ACATGT	1 cut(s)	934
PcsI	WCGNNNNNNNCGW	1 cut(s)	92
PdmI	GAANNNNTTC	1 cut(s)	304
PfeI	GAWTC	5 cut(s)	56, 416, 601, 677, 988
PleI	GAGTC	1 cut(s)	358
PpsI	GAGTC	1 cut(s)	358
PscI	ACATGT	1 cut(s)	934
PshBI	ATTAAT	1 cut(s)	213
Psp1406I	AACGTT	1 cut(s)	86
PspFI	CCCAGC	1 cut(s)	948
PspPI	GGNCC	2 cut(s)	427, 521
PsuI	RGATCY	3 cut(s)	155, 539, 716
RsaI	GTAC	6 cut(s)	260, 313, 509, 692, 748, 806
RsaNI	GTAC	6 cut(s)	259, 312, 508, 691, 747, 805
RseI	CAYNNNNRTG	1 cut(s)	764
SaqAI	TTAA	2 cut(s)	213, 393
Sau3AI	GATC	3 cut(s)	155, 539, 716
Sau96I	GGNCC	2 cut(s)	427, 521
ScaI	AGTACT	1 cut(s)	260
SchI	GAGTC	1 cut(s)	359
ScrFI	CCNGG	1 cut(s)	656
SduI	GDGCHC	2 cut(s)	288, 367
SetI	ASST	6 cut(s)	64, 89, 108, 317, 496, 950
SfaNI	GCATC	2 cut(s)	445, 786
SfcI	CTRYAG	1 cut(s)	444
SinI	GGWCC	2 cut(s)	427, 521
SmiMI	CAYNNNNRTG	1 cut(s)	764
Sse9I	AATT	8 cut(s)	357, 474, 573, 609, 683, 698, 849, 998
SseBI	AGGCCT	1 cut(s)	442
SsiI	CCGC	3 cut(s)	167, 688, 778
SspI	AATATT	1 cut(s)	754
SspMI	CTAG	1 cut(s)	66
StuI	AGGCCT	1 cut(s)	442
StyD4I	CCNGG	1 cut(s)	654
StyI	CCWWGG	1 cut(s)	176
TaaI	ACNGT	2 cut(s)	197, 525
TaiI	ACGT	1 cut(s)	89
TaqI	TCGA	2 cut(s)	308, 545
TasI	AATT	8 cut(s)	357, 474, 573, 609, 683, 698, 849, 998
TatI	WGTACW	3 cut(s)	258, 507, 804
TfiI	GAWTC	5 cut(s)	56, 416, 601, 677, 988
Tru1I	TTAA	2 cut(s)	213, 393
Tru9I	TTAA	2 cut(s)	213, 393
TseFI	GTSAC	1 cut(s)	328
Tsp45I	GTSAC	1 cut(s)	328
TspDTI	ATGAA	6 cut(s)	206, 423, 506, 597, 729, 785
TspGWI	ACGGA	1 cut(s)	239
VpaK11BI	GGWCC	2 cut(s)	427, 521
VspI	ATTAAT	1 cut(s)	213
XapI	RAATTY	4 cut(s)	573, 698, 849, 998
XceI	RCATGY	1 cut(s)	938
XmnI	GAANNNNTTC	1 cut(s)	304
XspI	CTAG	1 cut(s)	66
ZrmI	AGTACT	1 cut(s)	260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.