Rroxscaffold_3G00226820

LRR receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
10597774 .. 10598429
656 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_3G00226820.1

Sequence Viewer

Length: 150 bp
ATGTTATCTGGTATACACTTTGTTTGCTTCATGGTTGCATTGAGTTGCTTCAAGCTGCTAGGACTTGCTGAGTCTAATATGCCTCAAGAGGAAGAGTGCTCACGCTTTGGAGAGGTAAATGTTTTGTGTAGTGCTCAAGCTTCAGAGTAA

Protein Analysis

49

Amino Acids

5.36

Weight (kDa)

4.61

Isoelectric Point (pI)

59.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0030501)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0234281
rosa_roxburghii Rroxscaffold_3G00226820

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 13
AcuI CTGAAG 1 cut(s) 126
AgsI TTSAA 1 cut(s) 52
AluBI AGCT 2 cut(s) 55, 140
AluI AGCT 2 cut(s) 55, 140
Alw21I GWGCWC 2 cut(s) 101, 136
ApeKI GCWGC 1 cut(s) 55
Bbv12I GWGCWC 2 cut(s) 101, 136
BbvI GCAGC 1 cut(s) 42
BfaI CTAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 56
BlsI GCNGC 1 cut(s) 57
BpuEI CTTGAG 2 cut(s) 69, 120
BseMII CTCAG 1 cut(s) 60
BseXI GCAGC 1 cut(s) 42
BsiHKAI GWGCWC 2 cut(s) 101, 136
Bsp1286I GDGCHC 2 cut(s) 101, 136
BspCNI CTCAG 1 cut(s) 61
BssNAI GTATAC 1 cut(s) 14
Bst1107I GTATAC 1 cut(s) 14
Bst6I CTCTTC 1 cut(s) 87
BstDEI CTNAG 1 cut(s) 69
BstV1I GCAGC 1 cut(s) 42
BstZ17I GTATAC 1 cut(s) 14
CviAII CATG 1 cut(s) 31
CviJI RGCY 2 cut(s) 55, 140
CviKI_1 RGCY 2 cut(s) 55, 140
DdeI CTNAG 1 cut(s) 69
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 126
FaeI CATG 1 cut(s) 34
FaiI YATR 3 cut(s) 14, 32, 80
FatI CATG 1 cut(s) 30
FblI GTMKAC 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 56
Fsp4HI GCNGC 1 cut(s) 56
FspBI CTAG 1 cut(s) 59
FspEI CC 6 cut(s) 17, 45, 74, 93, 96, 98
GluI GCNGC 1 cut(s) 56
Hin1II CATG 1 cut(s) 34
HindIII AAGCTT 1 cut(s) 138
HinfI GANTC 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 86
Hpy8I GTNNAC 1 cut(s) 14
HpyCH4V TGCA 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 69
Hsp92II CATG 1 cut(s) 34
Lsp1109I GCAGC 1 cut(s) 42
MaeI CTAG 1 cut(s) 59
MboII GAAGA 1 cut(s) 104
MhlI GDGCHC 2 cut(s) 101, 136
MlyI GAGTC 1 cut(s) 80
MnlI CCTC 3 cut(s) 82, 93, 106
NlaIII CATG 1 cut(s) 34
PkrI GCNGC 1 cut(s) 57
PleI GAGTC 1 cut(s) 79
PpsI GAGTC 1 cut(s) 79
SatI GCNGC 1 cut(s) 56
SchI GAGTC 1 cut(s) 80
SduI GDGCHC 2 cut(s) 101, 136
SetI ASST 3 cut(s) 57, 117, 142
SgeI CNNG 7 cut(s) 21, 43, 64, 71, 77, 98, 114
SmlI CTYRAG 2 cut(s) 84, 135
SmoI CTYRAG 2 cut(s) 84, 135
SspMI CTAG 1 cut(s) 59
TseI GCWGC 1 cut(s) 55
TspDTI ATGAA 1 cut(s) 19
XmiI GTMKAC 1 cut(s) 13
XspI CTAG 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.