Rroxscaffold_3G00227990
ERF Family

AP2 ERF and B3 domain-containing transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0031977
Physical Location & Seq
Reverse (-)
12301740 .. 12302105
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00227990.1

Sequence Viewer

Length: 366 bp
ATGGGAGCAGCAATTTGTCTAACAATACCAAATTTAAAGGAGTTGTGCTGCAACAAATTGGCCACTGGGGTGCTCAGATCTATGCCAATCACAATAGGGTTTGGCTTGGAACATTCAATTCCGAGGTGGACGCAGCCATGTCTTATGATAGTGCTGCAATCAAGCTTCGCAACGGAGAGTGCCAAAAGGAACTTTGCATGGACCAAGGTCACTGATGATCAAGAGCCATACTTTCAGAATCTCTATAGCCAAGAAGCCGTTCTCAACACGATCAAGGACGGTCTTACCCGGCTAGATTTTTTTAGAATTTCTCATGGCTCGCCAGGCAGCAGAAAGTATGCAAAAAGTAGGAATGGCCGAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2 B3

Protein Analysis

121

Amino Acids

13.57

Weight (kDa)

9.42

Isoelectric Point (pI)

45.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031977)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_3G00227990
rosa_samantha Rh7DG420100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 2 cut(s) 60, 355
AcsI RAATTY 2 cut(s) 31, 306
AgsI TTSAA 1 cut(s) 117
AjnI CCWGG 1 cut(s) 322
AjuI GAANNNNNNNTTGG 2 cut(s) 243, 275
AleI CACNNNNGTG 1 cut(s) 68
AluBI AGCT 1 cut(s) 165
AluI AGCT 1 cut(s) 165
Alw21I GWGCWC 1 cut(s) 75
AoxI GGCC 2 cut(s) 60, 355
ApeKI GCWGC 5 cut(s) 8, 48, 133, 154, 327
ApoI RAATTY 2 cut(s) 31, 306
Asp700I GAANNNNTTC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 201
AsuC2I CCSGG 1 cut(s) 289
AvaII GGWCC 1 cut(s) 201
BalI TGGCCA 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 5 cut(s) 20, 35, 141, 145, 339
BceAI ACGGC 1 cut(s) 242
BciT130I CCWGG 1 cut(s) 324
BclI TGATCA 1 cut(s) 217
BcnI CCSGG 1 cut(s) 289
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 244
BglII AGATCT 1 cut(s) 77
BisI GCNGC 5 cut(s) 9, 49, 134, 155, 328
BlsI GCNGC 5 cut(s) 10, 50, 135, 156, 329
Bme1390I CCNGG 2 cut(s) 289, 324
Bme18I GGWCC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 201
BmrFI CCNGG 2 cut(s) 289, 324
BmrI ACTGGG 1 cut(s) 75
BmuI ACTGGG 1 cut(s) 75
BoxI GACNNNNGTC 1 cut(s) 206
BpuMI CCSGG 1 cut(s) 289
BsaJI CCNNGG 2 cut(s) 122, 204
Bse1I ACTGG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 122, 204
BseMII CTCAG 1 cut(s) 88
BseNI ACTGG 1 cut(s) 70
BseXI GCAGC 5 cut(s) 20, 35, 141, 145, 339
BshFI GGCC 2 cut(s) 62, 357
BsiHKAI GWGCWC 1 cut(s) 75
BsiSI CCGG 1 cut(s) 289
BsnI GGCC 2 cut(s) 62, 357
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 3 cut(s) 77, 217, 270
BspANI GGCC 2 cut(s) 62, 357
BspCNI CTCAG 1 cut(s) 87
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 2 cut(s) 122, 204
BssMI GATC 3 cut(s) 77, 217, 270
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 320
BstDEI CTNAG 1 cut(s) 74
BstKTI GATC 3 cut(s) 80, 220, 273
BstMBI GATC 3 cut(s) 77, 217, 270
BstMWI GCNNNNNNNGC 1 cut(s) 324
BstNI CCWGG 1 cut(s) 324
BstPAI GACNNNNGTC 1 cut(s) 206
BstSCI CCNGG 2 cut(s) 287, 322
BstSFI CTRYAG 1 cut(s) 244
BstV1I GCAGC 5 cut(s) 20, 35, 141, 145, 339
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BsuRI GGCC 2 cut(s) 62, 357
BtsIMutI CAGTG 2 cut(s) 63, 210
Cac8I GCNNGC 1 cut(s) 320
Cfr13I GGNCC 1 cut(s) 201
CseI GACGC 1 cut(s) 139
CviAII CATG 3 cut(s) 138, 198, 314
DdeI CTNAG 1 cut(s) 74
DpnI GATC 3 cut(s) 79, 219, 272
DpnII GATC 3 cut(s) 77, 217, 270
DraI TTTAAA 1 cut(s) 36
EaeI YGGCCR 2 cut(s) 60, 355
Eco130I CCWWGG 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 3 cut(s) 141, 201, 317
FaiI YATR 8 cut(s) 83, 139, 146, 199, 229, 246, 315, 339
FatI CATG 3 cut(s) 137, 197, 313
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 5 cut(s) 9, 49, 134, 155, 328
Fsp4HI GCNGC 5 cut(s) 9, 49, 134, 155, 328
FspBI CTAG 1 cut(s) 293
GluI GCNGC 5 cut(s) 9, 49, 134, 155, 328
HaeIII GGCC 2 cut(s) 62, 357
HapII CCGG 1 cut(s) 289
HgaI GACGC 1 cut(s) 139
Hin1II CATG 3 cut(s) 141, 201, 317
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 2 cut(s) 238, 360
HpaII CCGG 1 cut(s) 289
Hpy166II GTNNAC 1 cut(s) 129
Hpy188I TCNGA 3 cut(s) 77, 123, 237
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 1 cut(s) 129
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 4 cut(s) 51, 157, 197, 341
HpyF10VI GCNNNNNNNGC 1 cut(s) 324
HpyF3I CTNAG 1 cut(s) 74
Hsp92II CATG 3 cut(s) 141, 201, 317
Ksp22I TGATCA 1 cut(s) 217
Kzo9I GATC 3 cut(s) 77, 217, 270
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 4 cut(s) 51, 302, 309, 336
Lsp1109I GCAGC 5 cut(s) 20, 35, 141, 145, 339
MaeI CTAG 1 cut(s) 293
MaeIII GTNAC 1 cut(s) 208
MalI GATC 3 cut(s) 79, 219, 272
MboI GATC 3 cut(s) 77, 217, 270
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 75
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 5 cut(s) 12, 31, 56, 117, 306
MluNI TGGCCA 1 cut(s) 62
MnlI CCTC 1 cut(s) 117
Mox20I TGGCCA 1 cut(s) 62
MroXI GAANNNNTTC 1 cut(s) 258
MscI TGGCCA 1 cut(s) 62
MseI TTAA 1 cut(s) 35
MslI CAYNNNNRTG 1 cut(s) 68
Msp20I TGGCCA 1 cut(s) 62
MspI CCGG 1 cut(s) 289
MspR9I CCNGG 2 cut(s) 289, 324
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 1 cut(s) 324
NciI CCSGG 1 cut(s) 289
NdeII GATC 3 cut(s) 77, 217, 270
NlaIII CATG 3 cut(s) 141, 201, 317
NmuCI GTSAC 1 cut(s) 208
OliI CACNNNNGTG 1 cut(s) 68
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 5 cut(s) 10, 50, 135, 156, 329
PshAI GACNNNNGTC 1 cut(s) 206
Psp6I CCWGG 1 cut(s) 322
PspGI CCWGG 1 cut(s) 322
PspPI GGNCC 1 cut(s) 201
PsuI RGATCY 1 cut(s) 77
RseI CAYNNNNRTG 1 cut(s) 68
SaqAI TTAA 1 cut(s) 35
SatI GCNGC 5 cut(s) 9, 49, 134, 155, 328
Sau3AI GATC 3 cut(s) 77, 217, 270
Sau96I GGNCC 1 cut(s) 201
ScrFI CCNGG 2 cut(s) 289, 324
SduI GDGCHC 1 cut(s) 75
SetI ASST 3 cut(s) 128, 167, 210
SfcI CTRYAG 1 cut(s) 244
SinI GGWCC 1 cut(s) 201
SmiMI CAYNNNNRTG 1 cut(s) 68
Sse9I AATT 5 cut(s) 12, 31, 56, 117, 306
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 2 cut(s) 287, 322
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 281
TasI AATT 5 cut(s) 12, 31, 56, 117, 306
TfiI GAWTC 1 cut(s) 238
Tru1I TTAA 1 cut(s) 35
Tru9I TTAA 1 cut(s) 35
TscAI CASTG 2 cut(s) 70, 217
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 5 cut(s) 8, 48, 133, 154, 327
Tsp45I GTSAC 1 cut(s) 208
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 2 cut(s) 70, 217
VpaK11BI GGWCC 1 cut(s) 201
XapI RAATTY 2 cut(s) 31, 306
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.