Rh7DG420100
ERF Family

AP2 ERF and B3 domain-containing transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0031977
Physical Location & Seq
Forward (+)
59275800 .. 59276222
423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG420100.1

Sequence Viewer

Length: 423 bp
ATGGGAGCAGCAATTTGTCTACCAATGCCAAATTCAAAGGAGTTGTGCTGCAAAAAATTGGCCACTGGGGTGCTCAGATCTATGCCATTCACAATAGGGTTTGGCTTGGAATATTCAATTTCGAGGTCGACACAGCCATGTCTTATGATAGTGCTGCAATCAAGCTTCGCAACGGAGAGTGCCAAAAGGAACTTTGCATGGACCAAGGTCACTGATGATCAAGAGCCATACTTTCAGAATCTCTATAGCCAAGAAGCCGTTCTCAACATGATCAAGGACGGTCTTACCAGGCTAGATTTTTTAGAATTTCTCATGGCTCGCCAGGCAGCAGAAAGTATGCAAAGAGTAGGAATGGCCGAGTCTAACTCGGCCAACAAAGCAAAAGAGATATCGTTCACAGACAACTCTTTCAAAAAGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AP2 B3

Protein Analysis

140

Amino Acids

15.64

Weight (kDa)

8.36

Isoelectric Point (pI)

48.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0031977)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_3G00227990
rosa_samantha Rh7DG420100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 19, 128
AcoI YGGCCR 3 cut(s) 60, 354, 369
AcsI RAATTY 2 cut(s) 31, 305
AgsI TTSAA 3 cut(s) 36, 117, 412
AjnI CCWGG 2 cut(s) 287, 321
AjuI GAANNNNNNNTTGG 4 cut(s) 16, 48, 243, 275
AleI CACNNNNGTG 1 cut(s) 68
AluBI AGCT 2 cut(s) 165, 420
AluI AGCT 2 cut(s) 165, 420
Alw21I GWGCWC 1 cut(s) 75
AoxI GGCC 3 cut(s) 60, 354, 369
ApeKI GCWGC 4 cut(s) 8, 48, 154, 326
ApoI RAATTY 2 cut(s) 31, 305
Asp700I GAANNNNTTC 1 cut(s) 258
AspS9I GGNCC 1 cut(s) 201
AvaII GGWCC 1 cut(s) 201
BalI TGGCCA 1 cut(s) 62
Bbv12I GWGCWC 1 cut(s) 75
BbvI GCAGC 4 cut(s) 20, 35, 141, 338
BceAI ACGGC 1 cut(s) 242
BciT130I CCWGG 2 cut(s) 289, 323
BclI TGATCA 2 cut(s) 217, 270
BfaI CTAG 1 cut(s) 293
BfmI CTRYAG 1 cut(s) 244
BglII AGATCT 1 cut(s) 77
BisI GCNGC 4 cut(s) 9, 49, 155, 327
BlsI GCNGC 4 cut(s) 10, 50, 156, 328
Bme1390I CCNGG 2 cut(s) 289, 323
Bme18I GGWCC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 201
BmrFI CCNGG 2 cut(s) 289, 323
BmrI ACTGGG 1 cut(s) 75
BmuI ACTGGG 1 cut(s) 75
BoxI GACNNNNGTC 1 cut(s) 206
BplI GAGNNNNNCTC 2 cut(s) 350, 382
BsaJI CCNNGG 1 cut(s) 204
Bse1I ACTGG 1 cut(s) 70
BseBI CCWGG 2 cut(s) 289, 323
BseDI CCNNGG 1 cut(s) 204
BseMII CTCAG 1 cut(s) 88
BseNI ACTGG 1 cut(s) 70
BseXI GCAGC 4 cut(s) 20, 35, 141, 338
BshFI GGCC 3 cut(s) 62, 356, 371
BsiHKAI GWGCWC 1 cut(s) 75
BsnI GGCC 3 cut(s) 62, 356, 371
Bsp1286I GDGCHC 1 cut(s) 75
Bsp143I GATC 3 cut(s) 77, 217, 270
BspANI GGCC 3 cut(s) 62, 356, 371
BspCNI CTCAG 1 cut(s) 87
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 204
BssMI GATC 3 cut(s) 77, 217, 270
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 2 cut(s) 289, 323
Bst4CI ACNGT 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 319
BstDEI CTNAG 1 cut(s) 74
BstKTI GATC 3 cut(s) 80, 220, 273
BstMBI GATC 3 cut(s) 77, 217, 270
BstMWI GCNNNNNNNGC 2 cut(s) 323, 377
BstNI CCWGG 2 cut(s) 289, 323
BstPAI GACNNNNGTC 1 cut(s) 206
BstSCI CCNGG 2 cut(s) 287, 321
BstSFI CTRYAG 1 cut(s) 244
BstV1I GCAGC 4 cut(s) 20, 35, 141, 338
BstX2I RGATCY 1 cut(s) 77
BstYI RGATCY 1 cut(s) 77
BsuRI GGCC 3 cut(s) 62, 356, 371
BtsIMutI CAGTG 2 cut(s) 63, 210
Cac8I GCNNGC 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 201
CviAII CATG 4 cut(s) 138, 198, 268, 313
DdeI CTNAG 1 cut(s) 74
DpnI GATC 3 cut(s) 79, 219, 272
DpnII GATC 3 cut(s) 77, 217, 270
EaeI YGGCCR 3 cut(s) 60, 354, 369
Eco130I CCWWGG 1 cut(s) 204
Eco32I GATATC 1 cut(s) 390
Eco47I GGWCC 1 cut(s) 201
EcoRII CCWGG 2 cut(s) 287, 321
EcoRV GATATC 1 cut(s) 390
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
FaeI CATG 4 cut(s) 141, 201, 271, 316
FaiI YATR 9 cut(s) 83, 139, 146, 199, 229, 246, 269, 314, 338
FatI CATG 4 cut(s) 137, 197, 267, 312
FbaI TGATCA 2 cut(s) 217, 270
FblI GTMKAC 2 cut(s) 19, 128
Fnu4HI GCNGC 4 cut(s) 9, 49, 155, 327
Fsp4HI GCNGC 4 cut(s) 9, 49, 155, 327
FspBI CTAG 1 cut(s) 293
GluI GCNGC 4 cut(s) 9, 49, 155, 327
HaeIII GGCC 3 cut(s) 62, 356, 371
Hin1II CATG 4 cut(s) 141, 201, 271, 316
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HindIII AAGCTT 1 cut(s) 163
HinfI GANTC 2 cut(s) 238, 359
Hpy166II GTNNAC 3 cut(s) 20, 129, 396
Hpy188I TCNGA 2 cut(s) 77, 237
Hpy188III TCNNGA 1 cut(s) 221
Hpy8I GTNNAC 3 cut(s) 20, 129, 396
HpyCH4III ACNGT 1 cut(s) 281
HpyCH4V TGCA 4 cut(s) 51, 157, 197, 340
HpyF10VI GCNNNNNNNGC 2 cut(s) 323, 377
HpyF3I CTNAG 1 cut(s) 74
Hsp92II CATG 4 cut(s) 141, 201, 271, 316
Ksp22I TGATCA 2 cut(s) 217, 270
Kzo9I GATC 3 cut(s) 77, 217, 270
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 5 cut(s) 51, 274, 301, 308, 335
Lsp1109I GCAGC 4 cut(s) 20, 35, 141, 338
MaeI CTAG 1 cut(s) 293
MaeIII GTNAC 1 cut(s) 208
MalI GATC 3 cut(s) 79, 219, 272
MboI GATC 3 cut(s) 77, 217, 270
MflI RGATCY 1 cut(s) 77
MhlI GDGCHC 1 cut(s) 75
MlsI TGGCCA 1 cut(s) 62
MluCI AATT 5 cut(s) 12, 31, 56, 117, 305
MluNI TGGCCA 1 cut(s) 62
MlyI GAGTC 1 cut(s) 368
MnlI CCTC 1 cut(s) 117
Mox20I TGGCCA 1 cut(s) 62
MroXI GAANNNNTTC 1 cut(s) 258
MscI TGGCCA 1 cut(s) 62
MslI CAYNNNNRTG 2 cut(s) 68, 136
Msp20I TGGCCA 1 cut(s) 62
MspR9I CCNGG 2 cut(s) 289, 323
MvaI CCWGG 2 cut(s) 289, 323
MwoI GCNNNNNNNGC 2 cut(s) 323, 377
NdeII GATC 3 cut(s) 77, 217, 270
NlaIII CATG 4 cut(s) 141, 201, 271, 316
NmeAIII GCCGAG 2 cut(s) 347, 382
NmuCI GTSAC 1 cut(s) 208
OliI CACNNNNGTG 1 cut(s) 68
PdmI GAANNNNTTC 1 cut(s) 258
PfeI GAWTC 1 cut(s) 238
PkrI GCNGC 4 cut(s) 10, 50, 156, 328
PleI GAGTC 1 cut(s) 367
PpsI GAGTC 1 cut(s) 367
PshAI GACNNNNGTC 1 cut(s) 206
Psp6I CCWGG 2 cut(s) 287, 321
PspGI CCWGG 2 cut(s) 287, 321
PspPI GGNCC 1 cut(s) 201
PsuI RGATCY 1 cut(s) 77
RseI CAYNNNNRTG 2 cut(s) 68, 136
SalI GTCGAC 1 cut(s) 127
SatI GCNGC 4 cut(s) 9, 49, 155, 327
Sau3AI GATC 3 cut(s) 77, 217, 270
Sau96I GGNCC 1 cut(s) 201
SchI GAGTC 1 cut(s) 368
ScrFI CCNGG 2 cut(s) 289, 323
SduI GDGCHC 1 cut(s) 75
SetI ASST 4 cut(s) 128, 167, 210, 422
SfcI CTRYAG 1 cut(s) 244
SinI GGWCC 1 cut(s) 201
SmiMI CAYNNNNRTG 2 cut(s) 68, 136
Sse9I AATT 5 cut(s) 12, 31, 56, 117, 305
SspI AATATT 1 cut(s) 113
SspMI CTAG 1 cut(s) 293
StyD4I CCNGG 2 cut(s) 287, 321
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 1 cut(s) 281
TaqI TCGA 2 cut(s) 122, 128
TasI AATT 5 cut(s) 12, 31, 56, 117, 305
TfiI GAWTC 1 cut(s) 238
TscAI CASTG 2 cut(s) 70, 217
TseFI GTSAC 1 cut(s) 208
TseI GCWGC 4 cut(s) 8, 48, 154, 326
Tsp45I GTSAC 1 cut(s) 208
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 2 cut(s) 70, 217
VpaK11BI GGWCC 1 cut(s) 201
XapI RAATTY 2 cut(s) 31, 305
XmiI GTMKAC 2 cut(s) 19, 128
XmnI GAANNNNTTC 1 cut(s) 258
XspI CTAG 1 cut(s) 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.