Rroxscaffold_3G00232780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0018448
Physical Location & Seq
Forward (+)
18481239 .. 18484873
3635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00232780.1

Sequence Viewer

Length: 453 bp
ATGTCTTCAACGATCAAGGAAGGAAAGAAGAAATCAAAGACAATAACATTAGATCCACCTCCAGCAATTTCATGGCAGGAGAGGAAGAACTTTGCAGATAAGGAGGCAGAAGCCCTCGAAAAGAAGATACAAGATCTCAAAACATGGCCCCCAGGAGCCTACCACGACGTTTGCCTACAAGAACAGCAATTAGAAAATTCACAAATGATCCCAAAGTGGATATTTGGGTCCGTGAACACCAATATGATTGAATCCTTGAATGAAGAACAATTAAAGGAATACTTAGAACATAGACCCGATGAGCTCAAGACGGTGAAGACTCAAAAGAGCGCTCCACGACAAAGAGTCCAAAGAGCAGAAAAGCCTAAATGCTCAACCTCTAATGGAATTATGGCTTCTGTTTGGAAGTTCCACCAGAAAGAGGAACAACAGGAACAAAATCAATTGCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

150

Amino Acids

17.45

Weight (kDa)

8.46

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018448)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g31252
prunus_persica Prupe.1G031600_v2.0.a1
rosa_laevigata RLG00000001725
rosa_roxburghii Rroxscaffold_3G00232780
rosa_rugosa Rorug07G0237500
rosa_samantha Rh7AG384800 Rh7BG371600 Rh7CG404100 Rh7DG383800
rosa_wichuraiana Rw7G032330

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 47, 202
AcsI RAATTY 1 cut(s) 196
AfeI AGCGCT 1 cut(s) 331
AfiI CCNNNNNNNGG 1 cut(s) 421
AgsI TTSAA 3 cut(s) 9, 251, 259
AhdI GACNNNNNGTC 1 cut(s) 344
AjnI CCWGG 1 cut(s) 151
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
Alw21I GWGCWC 1 cut(s) 306
AlwI GGATC 2 cut(s) 47, 202
Aor51HI AGCGCT 1 cut(s) 331
AoxI GGCC 1 cut(s) 146
ApoI RAATTY 1 cut(s) 196
AspLEI GCGC 1 cut(s) 332
AspS9I GGNCC 2 cut(s) 147, 228
AsuHPI GGTGA 1 cut(s) 325
AvaII GGWCC 1 cut(s) 228
BanII GRGCYC 1 cut(s) 306
BbsI GAAGAC 1 cut(s) 323
Bbv12I GWGCWC 1 cut(s) 306
BciT130I CCWGG 1 cut(s) 153
BfoI RGCGCY 1 cut(s) 333
BglII AGATCT 1 cut(s) 133
Bme1390I CCNGG 1 cut(s) 153
Bme18I GGWCC 1 cut(s) 228
BmeRI GACNNNNNGTC 1 cut(s) 344
BmgT120I GGNCC 2 cut(s) 147, 228
BmiI GGNNCC 3 cut(s) 149, 157, 229
BmrFI CCNGG 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 323
BpmI CTGGAG 1 cut(s) 45
BpuEI CTTGAG 1 cut(s) 290
BsaJI CCNNGG 1 cut(s) 151
Bsc4I CCNNNNNNNGG 1 cut(s) 421
BseBI CCWGG 1 cut(s) 153
BseDI CCNNGG 1 cut(s) 151
BseLI CCNNNNNNNGG 1 cut(s) 421
BshFI GGCC 1 cut(s) 148
BsiHKAI GWGCWC 1 cut(s) 306
BslI CCNNNNNNNGG 1 cut(s) 421
BsnI GGCC 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 4 cut(s) 12, 52, 133, 207
BspANI GGCC 1 cut(s) 148
BspLI GGNNCC 3 cut(s) 149, 157, 229
BspPI GGATC 2 cut(s) 47, 202
BssECI CCNNGG 1 cut(s) 151
BssMI GATC 4 cut(s) 12, 52, 133, 207
Bst2UI CCWGG 1 cut(s) 153
Bst4CI ACNGT 1 cut(s) 313
BstDEI CTNAG 1 cut(s) 283
BstH2I RGCGCY 1 cut(s) 333
BstHHI GCGC 1 cut(s) 332
BstKTI GATC 4 cut(s) 15, 55, 136, 210
BstMBI GATC 4 cut(s) 12, 52, 133, 207
BstNI CCWGG 1 cut(s) 153
BstSCI CCNGG 1 cut(s) 151
BstV2I GAAGAC 1 cut(s) 323
BstX2I RGATCY 2 cut(s) 52, 133
BstYI RGATCY 2 cut(s) 52, 133
BsuRI GGCC 1 cut(s) 148
CfoI GCGC 1 cut(s) 332
Cfr13I GGNCC 2 cut(s) 147, 228
CspCI CAANNNNNGTGG 2 cut(s) 152, 187
CviAII CATG 2 cut(s) 72, 144
CviJI RGCY 6 cut(s) 113, 148, 158, 304, 364, 395
CviKI_1 RGCY 6 cut(s) 113, 148, 158, 304, 364, 395
DdeI CTNAG 1 cut(s) 283
DpnI GATC 4 cut(s) 14, 54, 135, 209
DpnII GATC 4 cut(s) 12, 52, 133, 207
DriI GACNNNNNGTC 1 cut(s) 344
Eam1105I GACNNNNNGTC 1 cut(s) 344
Ecl136II GAGCTC 1 cut(s) 304
Eco24I GRGCYC 1 cut(s) 306
Eco47I GGWCC 1 cut(s) 228
Eco47III AGCGCT 1 cut(s) 331
Eco53kI GAGCTC 1 cut(s) 304
EcoICRI GAGCTC 1 cut(s) 304
EcoRII CCWGG 1 cut(s) 151
EcoT38I GRGCYC 1 cut(s) 306
FaeI CATG 2 cut(s) 75, 147
FaiI YATR 6 cut(s) 73, 145, 245, 291, 392, 451
FalI AAGNNNNNCTT 2 cut(s) 266, 298
FatI CATG 2 cut(s) 71, 143
FriOI GRGCYC 1 cut(s) 306
GlaI GCGC 1 cut(s) 331
GsuI CTGGAG 1 cut(s) 45
HaeII RGCGCY 1 cut(s) 333
HaeIII GGCC 1 cut(s) 148
HhaI GCGC 1 cut(s) 332
Hin1II CATG 2 cut(s) 75, 147
Hin6I GCGC 1 cut(s) 330
HinP1I GCGC 1 cut(s) 330
HinfI GANTC 3 cut(s) 251, 319, 345
HphI GGTGA 1 cut(s) 325
Hpy166II GTNNAC 1 cut(s) 235
Hpy188III TCNNGA 1 cut(s) 307
Hpy8I GTNNAC 1 cut(s) 235
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 1 cut(s) 14
HpyCH4III ACNGT 1 cut(s) 313
HpyCH4IV ACGT 1 cut(s) 168
HpyCH4V TGCA 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 283
HpySE526I ACGT 1 cut(s) 168
Hsp92II CATG 2 cut(s) 75, 147
HspAI GCGC 1 cut(s) 330
Kzo9I GATC 4 cut(s) 12, 52, 133, 207
LmnI GCTCC 2 cut(s) 155, 337
LpnPI CCDG 6 cut(s) 62, 75, 138, 165, 416, 428
MaeII ACGT 1 cut(s) 168
MalI GATC 4 cut(s) 14, 54, 135, 209
MboI GATC 4 cut(s) 12, 52, 133, 207
MboII GAAGA 5 cut(s) 40, 97, 136, 275, 328
MfeI CAATTG 1 cut(s) 443
MflI RGATCY 2 cut(s) 52, 133
MhlI GDGCHC 1 cut(s) 306
MluCI AATT 6 cut(s) 66, 188, 196, 269, 387, 443
MlyI GAGTC 2 cut(s) 313, 354
MnlI CCTC 6 cut(s) 69, 75, 97, 125, 388, 415
MseI TTAA 1 cut(s) 272
MslI CAYNNNNRTG 1 cut(s) 242
MspR9I CCNGG 1 cut(s) 153
MunI CAATTG 1 cut(s) 443
MvaI CCWGG 1 cut(s) 153
NdeII GATC 4 cut(s) 12, 52, 133, 207
NlaIII CATG 2 cut(s) 75, 147
NlaIV GGNNCC 3 cut(s) 149, 157, 229
PfeI GAWTC 1 cut(s) 251
PleI GAGTC 2 cut(s) 313, 353
PpsI GAGTC 2 cut(s) 313, 353
Psp124BI GAGCTC 1 cut(s) 306
Psp6I CCWGG 1 cut(s) 151
PspGI CCWGG 1 cut(s) 151
PspN4I GGNNCC 3 cut(s) 149, 157, 229
PspPI GGNCC 2 cut(s) 147, 228
PsuI RGATCY 2 cut(s) 52, 133
RseI CAYNNNNRTG 1 cut(s) 242
SacI GAGCTC 1 cut(s) 306
SaqAI TTAA 1 cut(s) 272
Sau3AI GATC 4 cut(s) 12, 52, 133, 207
Sau96I GGNCC 2 cut(s) 147, 228
SchI GAGTC 2 cut(s) 313, 354
ScrFI CCNGG 1 cut(s) 153
SduI GDGCHC 1 cut(s) 306
SetI ASST 4 cut(s) 61, 171, 306, 380
SinI GGWCC 1 cut(s) 228
SmiMI CAYNNNNRTG 1 cut(s) 242
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 6 cut(s) 66, 188, 196, 269, 387, 443
SstI GAGCTC 1 cut(s) 306
StyD4I CCNGG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 313
TaiI ACGT 1 cut(s) 171
TaqI TCGA 1 cut(s) 117
TasI AATT 6 cut(s) 66, 188, 196, 269, 387, 443
TfiI GAWTC 1 cut(s) 251
Tru1I TTAA 1 cut(s) 272
Tru9I TTAA 1 cut(s) 272
TspDTI ATGAA 2 cut(s) 60, 276
TspGWI ACGGA 1 cut(s) 220
VpaK11BI GGWCC 1 cut(s) 228
XapI RAATTY 1 cut(s) 196
XcmI CCANNNNNNNNNTGG 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.