Rroxscaffold_3G00246000

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
39105524 .. 39111341
5818 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00246000.1

Sequence Viewer

Length: 204 bp
ATGTGCCAAAGTGGAGAGGACAACAAAGCTAACTTGAAAATAAAGGTTTCAGAAGAAATGCAGAGAGAGAAAAAAGGGAAAATTATTGCTGCCATTCTTCTTTTAGAGGCTTTAGGGTTTATCCCAGCTTCTGTATATTGGCGAAGTTCCTTGGTTTCTGTTTTGTATCTTTGCACTCATTGTTTTAGTAGTGTACAGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

67

Amino Acids

7.52

Weight (kDa)

8.53

Isoelectric Point (pI)

37.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0021172)

Species Orthologous Gene IDs
malus_domestica MD02G1309500.v1.1
rosa_chinensis RchiOBHm_Chr1g0344111
rosa_multiflora Rmu_sc0002531.1_g000016
rosa_roxburghii Rroxscaffold_3G00246000 Rroxscaffold_6G00396290

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 195
AgsI TTSAA 1 cut(s) 37
AluBI AGCT 2 cut(s) 29, 128
AluI AGCT 2 cut(s) 29, 128
AlwNI CAGNNNCTG 1 cut(s) 131
ApeKI GCWGC 1 cut(s) 89
BbvI GCAGC 1 cut(s) 76
BisI GCNGC 1 cut(s) 90
BlsI GCNGC 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 150
BseDI CCNNGG 1 cut(s) 150
BseXI GCAGC 1 cut(s) 76
BseYI CCCAGC 1 cut(s) 124
Bsp1407I TGTACA 1 cut(s) 193
BsrGI TGTACA 1 cut(s) 193
BssECI CCNNGG 1 cut(s) 150
BssT1I CCWWGG 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 198
BstAUI TGTACA 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 76
CaiI CAGNNNCTG 1 cut(s) 131
Csp6I GTAC 1 cut(s) 194
CviJI RGCY 3 cut(s) 29, 110, 128
CviKI_1 RGCY 3 cut(s) 29, 110, 128
CviQI GTAC 1 cut(s) 194
Eco130I CCWWGG 1 cut(s) 150
EcoT14I CCWWGG 1 cut(s) 150
ErhI CCWWGG 1 cut(s) 150
FaiI YATR 1 cut(s) 136
Fnu4HI GCNGC 1 cut(s) 90
Fsp4HI GCNGC 1 cut(s) 90
GluI GCNGC 1 cut(s) 90
GsaI CCCAGC 1 cut(s) 128
Hpy166II GTNNAC 1 cut(s) 194
Hpy188I TCNGA 1 cut(s) 52
Hpy8I GTNNAC 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 198
HpyCH4V TGCA 2 cut(s) 61, 174
LpnPI CCDG 1 cut(s) 138
Lsp1109I GCAGC 1 cut(s) 76
MboII GAAGA 2 cut(s) 65, 89
MluCI AATT 1 cut(s) 81
MnlI CCTC 2 cut(s) 10, 100
PkrI GCNGC 1 cut(s) 91
PspFI CCCAGC 1 cut(s) 124
PstNI CAGNNNCTG 1 cut(s) 131
RsaI GTAC 1 cut(s) 195
RsaNI GTAC 1 cut(s) 194
SatI GCNGC 1 cut(s) 90
SetI ASST 3 cut(s) 31, 48, 130
SgeI CNNG 3 cut(s) 46, 137, 163
Sse9I AATT 1 cut(s) 81
StyI CCWWGG 1 cut(s) 150
TaaI ACNGT 1 cut(s) 198
TasI AATT 1 cut(s) 81
TatI WGTACW 1 cut(s) 193
TseI GCWGC 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.