Rroxscaffold_3G00263920

Adenine guanine permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0014517
Physical Location & Seq
Reverse (-)
57719890 .. 57721503
1614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00263920.1

Sequence Viewer

Length: 1614 bp
ATGGGAAATGGGTTACTCACAAGGATAGGGAAGACATGGAGCAAAGCCGAGAAAAGCCTAAACGACGCAGTGGCAAGGAGCAGAGTTGGAAAATACTTCAAGCTGGAGGCAAGGAAGAGCTGCTTTACCAAAGAGCTACGAGCTGGGCTGGCCACTTTCCTCACCATGGCTTACATCATCACCGTCAACGCCACCATCATCGCCGACTCGGGTGGCACGTGCTCCATCTCCGACTGCTCCATTCTGGCAAACCAAACAGCTGCTGGCCCAGACTGCATGTTGAAGCCAAATCCAGGTTACGAAGCTTGTCTTGCAAACACCAAGAGTGACCTTATTGTTGGTACTGTTTTATCATCCATGATAGGGTCTATTGCTATGGGAGTTTTGGCAAATTTGCCCTTGGGCTTGGCCCCGGGGATGGGCTCAAATGCTTACTTGGCCTACAACCTAGTGGGCTTTCATGGCAGCGGGCCCATCAAATACCAAACTGCCCTAGCTGTGGTTCTTGTTGAGGGATGTGCTTTTCTTGCCATATCTGCTCTTGGTCTTAGAGAAAAGCTTGCCAAGCTCTTTCCACGCCCGGTTCGACTTGCTTGTGCGGCAGGAATTGGGCTTTTCATTGCATTTGTGGGCTTGCAAATACACCAGGGTGTGGGCTTAGTCGGCCCAGATCCCTCCACATTGGTCACCATCACAGCCTGTGCCAATACAAACCCCTCAACTGGTGAATGCCTTGGAGGGAAAATGCATAGCCCTAAATTTTGGCTGGCCTCCGCTGGTTTTTTGATTACATCTTATGGCCTAATGAAGAATATCAAGGGTAGCATGATATATGGTATTGTTTTTGTGACACTAATCTCATGGTTTAGGGACACAAGTGTGACAGTCTTTCCCAACACCCCAACTGGTGACACAAATTACTTGTATTTCAAGAAAGTGGTAGATTTTCACACAATCAAATCCACAGCTGGAGCTATCAGCTTTACTAACTTCAACAAATCAGAGGTTTGGGTGGCTTTGGCAACATTGCTCTATGTTGATGTGCTCGCCACCACAGGCACATTGTTCACCATGGCAGAAATGGGAGGGTTTGTGAATGACAAAGGTGGCTTTGAAGGTGAGTACTTAGCTTACCTTGTCGACGCTGGATCCACAGTTGTTGGGTCTGCATTGGGAATGTCACCAATTGCAACATATGTGGAGTCATCGGCTGGGTTGAGAGAAGGAGGCCGAACAGGATTAACAGCGGTGACAATTGGTTTGTGTTTCTTTGTGTCACTGTTTTTCATTCCTCTACTGTCTAGTGTGCCTCCTTGGGCTATAGGACCTTCACTTATAATGGTTGGGGTGATGATGATGAAAGTTGTGAAGGACATAAACTGGGGAGATATGAAAGAGGCTGTGCCTGCATTCATTACCATGCTTCTCATGCCTCTCACATATTCCATAGCAAATGGGATCATAGGTGGGATTGGGCTCTACATTGCTCTTGGCCTATATGACCATTTGGTAGTGTTGCTGAAATGGTTGGTTGAAATGAGAAGAAGGGTTGCCCAAGAACACAATCAAGTGTCTGCTACAGCTGCTGTAGAGTTAACAAATGAAATAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005345 GO:0006810 GO:0006863 GO:0008150 GO:0015205 GO:0015851 GO:0015853 GO:0015854 GO:0022857 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0072530 GO:1904823
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Xan_ur_permease

Protein Analysis

537

Amino Acids

56.92

Weight (kDa)

8.67

Isoelectric Point (pI)

22.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Xan_ur_permease PF00860 108 - 486 2.1e-24 Permease family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014517)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G50300 AT5G50300
fragaria_vesca FvH4_5g07290
malus_domestica MD06G1157500.v1.1 MD14G1164200.v1.1
prunus_persica Prupe.5G157500_v2.0.a1
pyrus_communis pycom06g14070 pycom14g13690
rosa_chinensis RchiOBHm_Chr7g0191341
rosa_laevigata RLG00000004464
rosa_multiflora Rmu_sc0004860.1_g000003
rosa_roxburghii Rroxscaffold_3G00263920
rosa_rugosa Rorug06G0510100
rosa_samantha Rh7AG117400 Rh7BG119300 Rh7CG122400 Rh7DG120500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1337
AccB7I CCANNNNNTGG 1 cut(s) 652
AccI GTMKAC 1 cut(s) 1140
AciI CCGC 4 cut(s) 468, 599, 774, 1247
AclWI GGATC 4 cut(s) 665, 1143, 1156, 1466
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 2 cut(s) 391, 758
AcvI CACGTG 1 cut(s) 219
AfaI GTAC 2 cut(s) 343, 1124
AfiI CCNNNNNNNGG 8 cut(s) 166, 293, 363, 418, 419, 499, 652, 722
AgsI TTSAA 6 cut(s) 100, 283, 931, 994, 1115, 1535
AjnI CCWGG 2 cut(s) 292, 645
AleI CACNNNNGTG 2 cut(s) 648, 878
Alw21I GWGCWC 2 cut(s) 224, 1047
AlwI GGATC 4 cut(s) 665, 1143, 1156, 1466
AlwNI CAGNNNCTG 2 cut(s) 263, 1586
Ama87I CYCGRG 2 cut(s) 208, 412
ApaI GGGCCC 1 cut(s) 474
ApeKI GCWGC 4 cut(s) 120, 260, 465, 1583
ApoI RAATTY 2 cut(s) 391, 758
ArsI GACNNNNNNTTYG 2 cut(s) 1243, 1275
AspS9I GGNCC 6 cut(s) 266, 409, 470, 471, 665, 1325
AsuC2I CCSGG 3 cut(s) 413, 414, 581
AvaI CYCGRG 2 cut(s) 208, 412
AvaII GGWCC 1 cut(s) 1325
BaeGI GKGCMC 1 cut(s) 474
BalI TGGCCA 1 cut(s) 152
BamHI GGATCC 1 cut(s) 1148
BanII GRGCYC 3 cut(s) 425, 474, 1479
BbrPI CACGTG 1 cut(s) 219
BbsI GAAGAC 1 cut(s) 38
Bbv12I GWGCWC 2 cut(s) 224, 1047
BbvI GCAGC 4 cut(s) 107, 247, 477, 1570
BccI CCATC 5 cut(s) 203, 233, 412, 482, 698
BciT130I CCWGG 2 cut(s) 294, 647
BcnI CCSGG 3 cut(s) 413, 414, 581
BfaI CTAG 3 cut(s) 449, 494, 1302
BfmI CTRYAG 3 cut(s) 1320, 1578, 1587
BisI GCNGC 5 cut(s) 121, 261, 466, 600, 1584
BlsI GCNGC 5 cut(s) 122, 262, 467, 601, 1585
BmcAI AGTACT 1 cut(s) 1124
Bme1390I CCNGG 5 cut(s) 294, 413, 414, 581, 647
Bme18I GGWCC 1 cut(s) 1325
BmeT110I CYCGRG 2 cut(s) 208, 412
BmgT120I GGNCC 6 cut(s) 266, 409, 470, 471, 665, 1325
BmiI GGNNCC 3 cut(s) 411, 472, 1150
BmrFI CCNGG 5 cut(s) 294, 413, 414, 581, 647
BmrI ACTGGG 1 cut(s) 1390
BmuI ACTGGG 1 cut(s) 1390
BpiI GAAGAC 1 cut(s) 38
BpmI CTGGAG 2 cut(s) 125, 990
BpuMI CCSGG 3 cut(s) 413, 414, 581
BsaAI YACGTR 1 cut(s) 219
BsaJI CCNNGG 9 cut(s) 165, 399, 411, 412, 413, 646, 733, 1071, 1313
BsaXI ACNNNNNCTCC 2 cut(s) 1077, 1107
Bsc4I CCNNNNNNNGG 8 cut(s) 166, 293, 363, 418, 419, 499, 652, 722
Bse1I ACTGG 3 cut(s) 727, 910, 1385
Bse3DI GCAATG 3 cut(s) 618, 1025, 1482
BseBI CCWGG 2 cut(s) 294, 647
BseDI CCNNGG 9 cut(s) 165, 399, 411, 412, 413, 646, 733, 1071, 1313
BseGI GGATG 3 cut(s) 353, 423, 521
BseLI CCNNNNNNNGG 8 cut(s) 166, 293, 363, 418, 419, 499, 652, 722
BseMI GCAATG 3 cut(s) 618, 1025, 1482
BseNI ACTGG 3 cut(s) 727, 910, 1385
BseSI GKGCMC 1 cut(s) 474
BseXI GCAGC 4 cut(s) 107, 247, 477, 1570
BseYI CCCAGC 2 cut(s) 143, 1211
BsiHKAI GWGCWC 2 cut(s) 224, 1047
BsiHKCI CYCGRG 2 cut(s) 208, 412
BsiSI CCGG 2 cut(s) 413, 581
BslFI GGGAC 1 cut(s) 884
BslI CCNNNNNNNGG 8 cut(s) 166, 293, 363, 418, 419, 499, 652, 722
BsmFI GGGAC 1 cut(s) 884
BsmI GAATGC 2 cut(s) 734, 1409
BsoBI CYCGRG 2 cut(s) 208, 412
Bsp120I GGGCCC 1 cut(s) 470
Bsp1286I GDGCHC 5 cut(s) 224, 425, 474, 1047, 1479
Bsp143I GATC 3 cut(s) 670, 1148, 1458
Bsp19I CCATGG 2 cut(s) 165, 1071
BspACI CCGC 4 cut(s) 468, 599, 774, 1247
BspLI GGNNCC 3 cut(s) 411, 472, 1150
BspPI GGATC 4 cut(s) 665, 1143, 1156, 1466
BspQI GCTCTTC 1 cut(s) 110
BsrDI GCAATG 3 cut(s) 618, 1025, 1482
BsrI ACTGG 3 cut(s) 727, 910, 1385
BssECI CCNNGG 9 cut(s) 165, 399, 411, 412, 413, 646, 733, 1071, 1313
BssMI GATC 3 cut(s) 670, 1148, 1458
BssT1I CCWWGG 5 cut(s) 165, 399, 733, 1071, 1313
Bst2UI CCWGG 2 cut(s) 294, 647
Bst4CI ACNGT 6 cut(s) 184, 346, 886, 1156, 1281, 1299
Bst6I CTCTTC 1 cut(s) 110
BstBAI YACGTR 1 cut(s) 219
BstC8I GCNNGC 8 cut(s) 150, 265, 470, 561, 635, 768, 1047, 1407
BstDEI CTNAG 3 cut(s) 548, 658, 1126
BstDSI CCRYGG 2 cut(s) 165, 1071
BstEII GGTNACC 1 cut(s) 685
BstF5I GGATG 3 cut(s) 353, 423, 521
BstKTI GATC 3 cut(s) 673, 1151, 1461
BstMBI GATC 3 cut(s) 670, 1148, 1458
BstNI CCWGG 2 cut(s) 294, 647
BstNSI RCATGY 1 cut(s) 280
BstPI GGTNACC 1 cut(s) 685
BstSCI CCNGG 5 cut(s) 292, 411, 412, 579, 645
BstSFI CTRYAG 3 cut(s) 1320, 1578, 1587
BstSLI GKGCMC 1 cut(s) 474
BstV1I GCAGC 4 cut(s) 107, 247, 477, 1570
BstV2I GAAGAC 1 cut(s) 38
BstX2I RGATCY 2 cut(s) 670, 1148
BstYI RGATCY 2 cut(s) 670, 1148
BtgI CCRYGG 2 cut(s) 165, 1071
BtgZI GCGATG 1 cut(s) 184
BtsCI GGATG 3 cut(s) 353, 423, 521
BtsI GCAGTG 1 cut(s) 75
BtsIMutI CAGTG 2 cut(s) 75, 1277
Cac8I GCNNGC 8 cut(s) 150, 265, 470, 561, 635, 768, 1047, 1407
CaiI CAGNNNCTG 2 cut(s) 263, 1586
Cfr13I GGNCC 6 cut(s) 266, 409, 470, 471, 665, 1325
Cfr9I CCCGGG 1 cut(s) 412
CseI GACGC 2 cut(s) 74, 1151
Csp6I GTAC 2 cut(s) 342, 1123
CspCI CAANNNNNGTGG 4 cut(s) 1141, 1176, 1179, 1214
CviQI GTAC 2 cut(s) 342, 1123
DdeI CTNAG 3 cut(s) 548, 658, 1126
DpnI GATC 3 cut(s) 672, 1150, 1460
DpnII GATC 3 cut(s) 670, 1148, 1458
EaeI YGGCCR 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 110
EarI CTCTTC 1 cut(s) 110
Eco130I CCWWGG 5 cut(s) 165, 399, 733, 1071, 1313
Eco24I GRGCYC 3 cut(s) 425, 474, 1479
Eco47I GGWCC 1 cut(s) 1325
Eco72I CACGTG 1 cut(s) 219
Eco88I CYCGRG 2 cut(s) 208, 412
Eco91I GGTNACC 1 cut(s) 685
EcoO109I RGGNCCY 1 cut(s) 1325
EcoO65I GGTNACC 1 cut(s) 685
EcoRII CCWGG 2 cut(s) 292, 645
EcoT14I CCWWGG 5 cut(s) 165, 399, 733, 1071, 1313
EcoT22I ATGCAT 1 cut(s) 750
EcoT38I GRGCYC 3 cut(s) 425, 474, 1479
ErhI CCWWGG 5 cut(s) 165, 399, 733, 1071, 1313
FalI AAGNNNNNCTT 4 cut(s) 107, 139, 294, 326
FaqI GGGAC 1 cut(s) 884
FauI CCCGC 1 cut(s) 461
FauNDI CATATG 1 cut(s) 1195
FblI GTMKAC 1 cut(s) 1140
Fnu4HI GCNGC 5 cut(s) 121, 261, 466, 600, 1584
FokI GGATG 3 cut(s) 340, 430, 528
FriOI GRGCYC 3 cut(s) 425, 474, 1479
Fsp4HI GCNGC 5 cut(s) 121, 261, 466, 600, 1584
FspBI CTAG 3 cut(s) 449, 494, 1302
GluI GCNGC 5 cut(s) 121, 261, 466, 600, 1584
GsaI CCCAGC 2 cut(s) 147, 1215
GsuI CTGGAG 2 cut(s) 125, 990
HapII CCGG 2 cut(s) 413, 581
HgaI GACGC 2 cut(s) 74, 1151
HincII GTYRAC 3 cut(s) 187, 1141, 1596
HindII GTYRAC 3 cut(s) 187, 1141, 1596
HindIII AAGCTT 2 cut(s) 303, 557
HinfI GANTC 2 cut(s) 206, 1202
HpaI GTTAAC 1 cut(s) 1596
HpaII CCGG 2 cut(s) 413, 581
Hpy166II GTNNAC 4 cut(s) 187, 1068, 1141, 1596
Hpy188I TCNGA 2 cut(s) 232, 1003
Hpy188III TCNNGA 1 cut(s) 931
Hpy8I GTNNAC 4 cut(s) 187, 1068, 1141, 1596
Hpy99I CGWCG 2 cut(s) 68, 1145
HpyAV CCTTC 5 cut(s) 1109, 1217, 1338, 1363, 1539
HpyCH4III ACNGT 6 cut(s) 184, 346, 886, 1156, 1281, 1299
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 8 cut(s) 276, 314, 623, 637, 748, 1169, 1190, 1409
HpyF3I CTNAG 3 cut(s) 548, 658, 1126
HpySE526I ACGT 1 cut(s) 218
KspAI GTTAAC 1 cut(s) 1596
Kzo9I GATC 3 cut(s) 670, 1148, 1458
LguI GCTCTTC 1 cut(s) 110
LmnI GCTCC 5 cut(s) 39, 78, 227, 242, 971
Lsp1109I GCAGC 4 cut(s) 107, 247, 477, 1570
MaeI CTAG 3 cut(s) 449, 494, 1302
MaeII ACGT 1 cut(s) 218
MalI GATC 3 cut(s) 672, 1150, 1460
MboI GATC 3 cut(s) 670, 1148, 1458
MboII GAAGA 4 cut(s) 43, 127, 820, 1554
MfeI CAATTG 2 cut(s) 1185, 1254
MflI RGATCY 2 cut(s) 670, 1148
MhlI GDGCHC 5 cut(s) 224, 425, 474, 1047, 1479
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 7 cut(s) 391, 606, 758, 916, 1185, 1254, 1608
MluNI TGGCCA 1 cut(s) 152
MlyI GAGTC 2 cut(s) 200, 1211
MmeI TCCRAC 2 cut(s) 67, 255
Mox20I TGGCCA 1 cut(s) 152
Mph1103I ATGCAT 1 cut(s) 750
MscI TGGCCA 1 cut(s) 152
MseI TTAA 2 cut(s) 1241, 1595
MslI CAYNNNNRTG 3 cut(s) 648, 878, 1418
Msp20I TGGCCA 1 cut(s) 152
MspA1I CMGCKG 6 cut(s) 260, 468, 776, 968, 1247, 1583
MspI CCGG 2 cut(s) 413, 581
MspR9I CCNGG 5 cut(s) 294, 413, 414, 581, 647
MunI CAATTG 2 cut(s) 1185, 1254
Mva1269I GAATGC 2 cut(s) 734, 1409
MvaI CCWGG 2 cut(s) 294, 647
NciI CCSGG 3 cut(s) 413, 414, 581
NcoI CCATGG 2 cut(s) 165, 1071
NdeI CATATG 1 cut(s) 1195
NdeII GATC 3 cut(s) 670, 1148, 1458
NlaIV GGNNCC 3 cut(s) 411, 472, 1150
NmeAIII GCCGAG 1 cut(s) 73
NmuCI GTSAC 8 cut(s) 326, 685, 847, 880, 908, 1179, 1249, 1275
NsiI ATGCAT 1 cut(s) 750
NspI RCATGY 1 cut(s) 280
OliI CACNNNNGTG 2 cut(s) 648, 878
PciSI GCTCTTC 1 cut(s) 110
PcsI WCGNNNNNNNCGW 2 cut(s) 215, 583
PctI GAATGC 2 cut(s) 734, 1409
PflMI CCANNNNNTGG 1 cut(s) 652
PkrI GCNGC 5 cut(s) 122, 262, 467, 601, 1585
PleI GAGTC 2 cut(s) 200, 1210
PmaCI CACGTG 1 cut(s) 219
PmlI CACGTG 1 cut(s) 219
PpsI GAGTC 2 cut(s) 200, 1210
Ppu21I YACGTR 1 cut(s) 219
PpuMI RGGWCCY 1 cut(s) 1325
PsiI TTATAA 1 cut(s) 1337
Psp5II RGGWCCY 1 cut(s) 1325
Psp6I CCWGG 2 cut(s) 292, 645
PspCI CACGTG 1 cut(s) 219
PspEI GGTNACC 1 cut(s) 685
PspFI CCCAGC 2 cut(s) 143, 1211
PspGI CCWGG 2 cut(s) 292, 645
PspN4I GGNNCC 3 cut(s) 411, 472, 1150
PspOMI GGGCCC 1 cut(s) 470
PspPI GGNCC 6 cut(s) 266, 409, 470, 471, 665, 1325
PspPPI RGGWCCY 1 cut(s) 1325
PstNI CAGNNNCTG 2 cut(s) 263, 1586
PsuI RGATCY 2 cut(s) 670, 1148
PvuII CAGCTG 3 cut(s) 260, 968, 1583
RsaI GTAC 2 cut(s) 343, 1124
RsaNI GTAC 2 cut(s) 342, 1123
RseI CAYNNNNRTG 3 cut(s) 648, 878, 1418
SalI GTCGAC 1 cut(s) 1139
SapI GCTCTTC 1 cut(s) 110
SaqAI TTAA 2 cut(s) 1241, 1595
SatI GCNGC 5 cut(s) 121, 261, 466, 600, 1584
Sau3AI GATC 3 cut(s) 670, 1148, 1458
Sau96I GGNCC 6 cut(s) 266, 409, 470, 471, 665, 1325
ScaI AGTACT 1 cut(s) 1124
SchI GAGTC 2 cut(s) 200, 1211
ScrFI CCNGG 5 cut(s) 294, 413, 414, 581, 647
SduI GDGCHC 5 cut(s) 224, 425, 474, 1047, 1479
SfcI CTRYAG 3 cut(s) 1320, 1578, 1587
SinI GGWCC 1 cut(s) 1325
SmaI CCCGGG 1 cut(s) 414
SmiMI CAYNNNNRTG 3 cut(s) 648, 878, 1418
Sse9I AATT 7 cut(s) 391, 606, 758, 916, 1185, 1254, 1608
SsiI CCGC 4 cut(s) 468, 599, 774, 1247
SspMI CTAG 3 cut(s) 449, 494, 1302
StyD4I CCNGG 5 cut(s) 292, 411, 412, 579, 645
StyI CCWWGG 5 cut(s) 165, 399, 733, 1071, 1313
TaaI ACNGT 6 cut(s) 184, 346, 886, 1156, 1281, 1299
TaiI ACGT 1 cut(s) 221
TaqI TCGA 2 cut(s) 586, 1140
TasI AATT 7 cut(s) 391, 606, 758, 916, 1185, 1254, 1608
TatI WGTACW 1 cut(s) 1122
TauI GCSGC 1 cut(s) 602
Tru1I TTAA 2 cut(s) 1241, 1595
Tru9I TTAA 2 cut(s) 1241, 1595
TscAI CASTG 2 cut(s) 75, 1284
TseFI GTSAC 8 cut(s) 326, 685, 847, 880, 908, 1179, 1249, 1275
TseI GCWGC 4 cut(s) 120, 260, 465, 1583
Tsp45I GTSAC 8 cut(s) 326, 685, 847, 880, 908, 1179, 1249, 1275
TspDTI ATGAA 7 cut(s) 449, 607, 821, 1276, 1373, 1402, 1406
TspMI CCCGGG 1 cut(s) 412
TspRI CASTG 2 cut(s) 75, 1284
Van91I CCANNNNNTGG 1 cut(s) 652
VpaK11BI GGWCC 1 cut(s) 1325
XapI RAATTY 2 cut(s) 391, 758
XceI RCATGY 1 cut(s) 280
XcmI CCANNNNNNNNNTGG 2 cut(s) 260, 1078
XmaI CCCGGG 1 cut(s) 412
XmiI GTMKAC 1 cut(s) 1140
XspI CTAG 3 cut(s) 449, 494, 1302
ZrmI AGTACT 1 cut(s) 1124
Zsp2I ATGCAT 1 cut(s) 750
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.