Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0032036

Physical Location & Seq

Genomic Coordinates Reverse (-)

58565139 .. 58569941

Gene Structure 4803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00265130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGATTCCAAGCTATCAATCAAATGATGGCAAGAACTTGATTGGGGAGGGGGGCTATGCTGAAGTTTACAAGGGGACATTGGAAGATGGGCAGATTGTCGCAATTAAACGTCTAACTAGAGGTAAACCAGGAGAAATTACAGGAGACTTGTTATCCGAGCTTGGTGTTATAGTTCATGTTGACCACCCCAACATAGCAAAACTATATGGTTGGTATATCATTATGAATCTTTTACATCTTAAATTCCTCTCAATTTCACCGACATTCCAATTATTGGTTCGCTTCTTTGTCAAATTTCTAGGCCCGAGAGAGATACCGACGGGGCATCGATATAAAGAAAATGCAATTCACCAACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

119

Amino Acids

13.42

Weight (kDa)

8.89

Isoelectric Point (pI)

21.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	12 - 73	4.1e-09	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	12 - 73	3.8e-08	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0032036)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_3G00265130 Rroxscaffold_7G00174710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	274
AcsI	RAATTY	2 cut(s)	242, 293
AcuI	CTGAAG	1 cut(s)	81
AfiI	CCNNNNNNNGG	1 cut(s)	274
AjnI	CCWGG	1 cut(s)	127
AjuI	GAANNNNNNNTTGG	2 cut(s)	261, 293
AluBI	AGCT	2 cut(s)	12, 160
AluI	AGCT	2 cut(s)	12, 160
Alw26I	GTCTC	1 cut(s)	138
Ama87I	CYCGRG	1 cut(s)	304
AoxI	GGCC	1 cut(s)	301
ApoI	RAATTY	2 cut(s)	242, 293
AspS9I	GGNCC	1 cut(s)	302
AsuHPI	GGTGA	2 cut(s)	249, 341
AvaI	CYCGRG	1 cut(s)	304
BccI	CCATC	2 cut(s)	20, 80
BciT130I	CCWGG	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	138
BfaI	CTAG	2 cut(s)	117, 299
Bme1390I	CCNGG	1 cut(s)	129
BmeT110I	CYCGRG	1 cut(s)	304
BmgT120I	GGNCC	1 cut(s)	302
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	334
Bsa29I	ATCGAT	1 cut(s)	328
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
BseBI	CCWGG	1 cut(s)	129
BseCI	ATCGAT	1 cut(s)	328
BseLI	CCNNNNNNNGG	1 cut(s)	274
BshFI	GGCC	1 cut(s)	303
BshVI	ATCGAT	1 cut(s)	328
BsiHKCI	CYCGRG	1 cut(s)	304
BslFI	GGGAC	1 cut(s)	88
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	138
BsmFI	GGGAC	1 cut(s)	88
BsnI	GGCC	1 cut(s)	303
BsoBI	CYCGRG	1 cut(s)	304
BspANI	GGCC	1 cut(s)	303
BspDI	ATCGAT	1 cut(s)	328
Bst2UI	CCWGG	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	357
BstMAI	GTCTC	1 cut(s)	138
BstNI	CCWGG	1 cut(s)	129
BstSCI	CCNGG	1 cut(s)	127
Bsu15I	ATCGAT	1 cut(s)	328
BsuRI	GGCC	1 cut(s)	303
BsuTUI	ATCGAT	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	302
ClaI	ATCGAT	1 cut(s)	328
CviAII	CATG	1 cut(s)	176
CviJI	RGCY	4 cut(s)	12, 54, 160, 303
CviKI_1	RGCY	4 cut(s)	12, 54, 160, 303
Eco57I	CTGAAG	1 cut(s)	81
Eco88I	CYCGRG	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	127
FaeI	CATG	1 cut(s)	179
FaiI	YATR	9 cut(s)	57, 170, 177, 194, 205, 207, 216, 224, 333
FaqI	GGGAC	1 cut(s)	88
FatI	CATG	1 cut(s)	175
FspBI	CTAG	2 cut(s)	117, 299
HaeIII	GGCC	1 cut(s)	303
Hin1II	CATG	1 cut(s)	179
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	2 cut(s)	4, 226
HphI	GGTGA	2 cut(s)	249, 341
Hpy166II	GTNNAC	3 cut(s)	67, 125, 181
Hpy188I	TCNGA	1 cut(s)	157
Hpy8I	GTNNAC	3 cut(s)	67, 125, 181
Hpy99I	CGWCG	1 cut(s)	322
HpyCH4III	ACNGT	1 cut(s)	357
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	344
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	1 cut(s)	179
LpnPI	CCDG	3 cut(s)	114, 126, 141
LweI	GCATC	1 cut(s)	334
MaeI	CTAG	2 cut(s)	117, 299
MaeII	ACGT	1 cut(s)	109
MboII	GAAGA	1 cut(s)	95
MluCI	AATT	7 cut(s)	102, 135, 242, 252, 269, 293, 345
MnlI	CCTC	3 cut(s)	40, 113, 257
MseI	TTAA	2 cut(s)	105, 240
MspR9I	CCNGG	1 cut(s)	129
MvaI	CCWGG	1 cut(s)	129
NlaIII	CATG	1 cut(s)	179
PfeI	GAWTC	2 cut(s)	4, 226
PflMI	CCANNNNNTGG	1 cut(s)	274
Psp6I	CCWGG	1 cut(s)	127
PspGI	CCWGG	1 cut(s)	127
PspPI	GGNCC	1 cut(s)	302
SaqAI	TTAA	2 cut(s)	105, 240
Sau96I	GGNCC	1 cut(s)	302
ScrFI	CCNGG	1 cut(s)	129
SetI	ASST	4 cut(s)	14, 112, 124, 162
SfaNI	GCATC	1 cut(s)	334
Sse9I	AATT	7 cut(s)	102, 135, 242, 252, 269, 293, 345
SspMI	CTAG	2 cut(s)	117, 299
StyD4I	CCNGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	357
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	1 cut(s)	328
TasI	AATT	7 cut(s)	102, 135, 242, 252, 269, 293, 345
TfiI	GAWTC	2 cut(s)	4, 226
Tru1I	TTAA	2 cut(s)	105, 240
Tru9I	TTAA	2 cut(s)	105, 240
TspDTI	ATGAA	2 cut(s)	164, 239
Van91I	CCANNNNNTGG	1 cut(s)	274
XapI	RAATTY	2 cut(s)	242, 293
XspI	CTAG	2 cut(s)	117, 299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.