Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0032036

Physical Location & Seq

Genomic Coordinates Reverse (-)

14343239 .. 14370874

Gene Structure 27636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00174710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 975 bp

ATGGGTAGAGATTATGAATTCTCTGTTGATAATGCGATAGCTAGAGCAGGGACCAAAATCATTAGTCAAAAGGGTTCAAGCATAGTCAAACCACAAGCAGCCTTGCTTCTAGCATGCAGCAAGGACAGAGAACACGAGGATGCAGCAACCCCAAGCCATCGGCTTGGAGGCTCAAAAAAGTGCCCATCCGAGGGACCCACCGTCCCACCGTTTTGTCTCCATCCCGACGGACCACCATCCTCACTGCGGACCCCACCGTCGATCAACACCTCCATCCGTTTGTTTGTCTACATCCAATCGGACCACCATCCTCACTGCGGACCCCACGGTCTCGTCAACATCCGAGTGCTCCACCCCCACGAGAACTTGATTGGGGAGGGGGCTATGCTGAAAGTTTACAAGGGGGCATCGGAAGATGGGCGATTGTCGATTAAACGTCTAACTAGAGGTAAACCAAGAGAAATGACAAGAGACTTGTTATCCGAGCTTGGTGTTATAGTTCATGTTGACCACCCCAACATAGCAAAACTATATGAGAAGCCCATAATCAATTGGAATCATACACTCATTTTTCAAATCCGAATCCCGGATACATATATTCCGGAAAAGCTAGACGGGGAGTGTGCTGTAATAATTCGGGGCGTGACAGTTTGGTATCGAGAGCGAAATGACAGAACATCGCGATCTAGAGACAGTTTGAAACACAATCCGTTTTCAAACGACGTCGTTTCTCTCTTTGTTGCTGCGTCGCGTCTCGCGCCTTGGGCGTCGCCTTTCACGCCTTCAATCAACCTTATGTCATCAAAAGATTCACGGCCTAGGCAGTACAATGAGGAAAGAATGCAGGCAGATGAAGGAATCCATAATCATCAAGATCATATATCAGAAGAACACGTCCTTATTTCACCAAATGACAATGGAAGAATTTGCAAGTCTAGGCTATCAATATATAGACACTCTCTCTCCATGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051020 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

324

Amino Acids

36.44

Weight (kDa)

9.1

Isoelectric Point (pI)

37.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0032036)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_3G00265130 Rroxscaffold_7G00174710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	256, 327
AatII	GACGTC	1 cut(s)	726
AccI	GTMKAC	1 cut(s)	288
AccII	CGCG	3 cut(s)	682, 751, 758
AccIII	TCCGGA	1 cut(s)	601
AciI	CCGC	2 cut(s)	247, 318
AcsI	RAATTY	2 cut(s)	17, 924
AcyI	GRCGYC	2 cut(s)	723, 767
AfaI	GTAC	1 cut(s)	827
AfiI	CCNNNNNNNGG	5 cut(s)	190, 191, 246, 317, 586
AflIII	ACRYGT	1 cut(s)	892
AgsI	TTSAA	5 cut(s)	78, 575, 700, 717, 786
AhdI	GACNNNNNGTC	1 cut(s)	200
AjiI	CACGTC	1 cut(s)	895
AluBI	AGCT	3 cut(s)	41, 487, 610
AluI	AGCT	3 cut(s)	41, 487, 610
Alw21I	GWGCWC	1 cut(s)	351
Alw26I	GTCTC	5 cut(s)	221, 335, 465, 684, 758
Aor13HI	TCCGGA	1 cut(s)	601
AoxI	GGCC	1 cut(s)	815
ApeKI	GCWGC	4 cut(s)	98, 117, 143, 743
ApoI	RAATTY	2 cut(s)	17, 924
AspA2I	CCTAGG	1 cut(s)	818
AspLEI	GCGC	1 cut(s)	760
AspS9I	GGNCC	6 cut(s)	51, 194, 230, 249, 301, 320
AsuC2I	CCSGG	1 cut(s)	587
AsuHPI	GGTGA	1 cut(s)	897
AvaII	GGWCC	6 cut(s)	51, 194, 230, 249, 301, 320
AvrII	CCTAGG	1 cut(s)	818
BaeGI	GKGCMC	1 cut(s)	185
BauI	CACGAG	2 cut(s)	134, 359
Bbv12I	GWGCWC	1 cut(s)	351
BbvI	GCAGC	4 cut(s)	110, 129, 155, 730
BccI	CCATC	7 cut(s)	165, 193, 228, 244, 281, 315, 410
BceAI	ACGGC	1 cut(s)	830
BciVI	GTATCC	1 cut(s)	583
BcnI	CCSGG	1 cut(s)	587
BcoDI	GTCTC	5 cut(s)	221, 335, 465, 684, 758
BfaI	CTAG	7 cut(s)	42, 110, 444, 611, 687, 819, 936
BfuI	GTATCC	1 cut(s)	583
BisI	GCNGC	4 cut(s)	99, 118, 144, 744
BlnI	CCTAGG	1 cut(s)	818
BlsI	GCNGC	4 cut(s)	100, 119, 145, 745
Bme1390I	CCNGG	1 cut(s)	587
Bme18I	GGWCC	6 cut(s)	51, 194, 230, 249, 301, 320
BmeRI	GACNNNNNGTC	1 cut(s)	200
BmgBI	CACGTC	1 cut(s)	895
BmgT120I	GGNCC	6 cut(s)	51, 194, 230, 249, 301, 320
BmiI	GGNNCC	5 cut(s)	52, 195, 196, 251, 322
BmrFI	CCNGG	1 cut(s)	587
BmsI	GCATC	2 cut(s)	130, 416
BpuMI	CCSGG	1 cut(s)	587
BsaHI	GRCGYC	2 cut(s)	723, 767
BsaI	GGTCTC	1 cut(s)	335
BsaJI	CCNNGG	4 cut(s)	189, 325, 761, 818
BsaWI	WCCGGW	1 cut(s)	601
BsaXI	ACNNNNNCTCC	1 cut(s)	947
Bsc4I	CCNNNNNNNGG	5 cut(s)	190, 191, 246, 317, 586
BseAI	TCCGGA	1 cut(s)	601
BseDI	CCNNGG	4 cut(s)	189, 325, 761, 818
BseGI	GGATG	8 cut(s)	145, 185, 220, 236, 273, 291, 307, 339
BseLI	CCNNNNNNNGG	5 cut(s)	190, 191, 246, 317, 586
BseSI	GKGCMC	1 cut(s)	185
BseXI	GCAGC	4 cut(s)	110, 129, 155, 730
Bsh1236I	CGCG	3 cut(s)	682, 751, 758
BshFI	GGCC	1 cut(s)	817
BsiHKAI	GWGCWC	1 cut(s)	351
BsiSI	CCGG	2 cut(s)	587, 602
BslFI	GGGAC	3 cut(s)	64, 188, 207
BslI	CCNNNNNNNGG	5 cut(s)	190, 191, 246, 317, 586
BsmAI	GTCTC	5 cut(s)	221, 335, 465, 684, 758
BsmBI	CGTCTC	1 cut(s)	758
BsmFI	GGGAC	3 cut(s)	64, 188, 207
BsmI	GAATGC	1 cut(s)	846
BsnI	GGCC	1 cut(s)	817
Bso31I	GGTCTC	1 cut(s)	335
Bsp1286I	GDGCHC	2 cut(s)	185, 351
Bsp13I	TCCGGA	1 cut(s)	601
Bsp143I	GATC	3 cut(s)	261, 683, 874
Bsp68I	TCGCGA	1 cut(s)	682
BspACI	CCGC	2 cut(s)	247, 318
BspANI	GGCC	1 cut(s)	817
BspEI	TCCGGA	1 cut(s)	601
BspFNI	CGCG	3 cut(s)	682, 751, 758
BspLI	GGNNCC	5 cut(s)	52, 195, 196, 251, 322
BspTNI	GGTCTC	1 cut(s)	335
BssECI	CCNNGG	4 cut(s)	189, 325, 761, 818
BssMI	GATC	3 cut(s)	261, 683, 874
BssNI	GRCGYC	2 cut(s)	723, 767
BssSI	CACGAG	2 cut(s)	134, 359
BssT1I	CCWWGG	2 cut(s)	761, 818
Bst2BI	CACGAG	2 cut(s)	134, 359
Bst4CI	ACNGT	6 cut(s)	202, 210, 258, 329, 649, 695
BstACI	GRCGYC	2 cut(s)	723, 767
BstC8I	GCNNGC	2 cut(s)	115, 846
BstDSI	CCRYGG	1 cut(s)	325
BstF5I	GGATG	8 cut(s)	145, 185, 220, 236, 273, 291, 307, 339
BstFNI	CGCG	3 cut(s)	682, 751, 758
BstHHI	GCGC	1 cut(s)	760
BstKTI	GATC	3 cut(s)	264, 686, 877
BstMAI	GTCTC	5 cut(s)	221, 335, 465, 684, 758
BstMBI	GATC	3 cut(s)	261, 683, 874
BstMWI	GCNNNNNNNGC	3 cut(s)	757, 764, 778
BstNSI	RCATGY	1 cut(s)	117
BstSCI	CCNGG	1 cut(s)	585
BstSLI	GKGCMC	1 cut(s)	185
BstUI	CGCG	3 cut(s)	682, 751, 758
BstV1I	GCAGC	4 cut(s)	110, 129, 155, 730
BstXI	CCANNNNNNTGG	1 cut(s)	164
BsuI	GTATCC	1 cut(s)	583
BsuRI	GGCC	1 cut(s)	817
BtgI	CCRYGG	1 cut(s)	325
BtgZI	GCGATG	1 cut(s)	663
BtrI	CACGTC	1 cut(s)	895
BtsCI	GGATG	8 cut(s)	145, 185, 220, 236, 273, 291, 307, 339
BtsI	GCAGTG	2 cut(s)	242, 313
BtsIMutI	CAGTG	2 cut(s)	242, 313
BtuMI	TCGCGA	1 cut(s)	682
Cac8I	GCNNGC	2 cut(s)	115, 846
CfoI	GCGC	1 cut(s)	760
Cfr13I	GGNCC	6 cut(s)	51, 194, 230, 249, 301, 320
CseI	GACGC	3 cut(s)	735, 740, 756
Csp6I	GTAC	1 cut(s)	826
CviAII	CATG	3 cut(s)	114, 503, 967
CviQI	GTAC	1 cut(s)	826
DpnI	GATC	3 cut(s)	263, 685, 876
DpnII	GATC	3 cut(s)	261, 683, 874
DrdI	GACNNNNNNGTC	2 cut(s)	256, 327
DriI	GACNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	2 cut(s)	256, 327
Eam1105I	GACNNNNNGTC	1 cut(s)	200
Eco130I	CCWWGG	2 cut(s)	761, 818
Eco31I	GGTCTC	1 cut(s)	335
Eco47I	GGWCC	6 cut(s)	51, 194, 230, 249, 301, 320
EcoO109I	RGGNCCY	1 cut(s)	194
EcoRI	GAATTC	1 cut(s)	17
EcoT14I	CCWWGG	2 cut(s)	761, 818
ErhI	CCWWGG	2 cut(s)	761, 818
Esp3I	CGTCTC	1 cut(s)	758
FaeI	CATG	3 cut(s)	117, 506, 970
FaqI	GGGAC	3 cut(s)	64, 188, 207
FatI	CATG	3 cut(s)	113, 502, 966
FblI	GTMKAC	1 cut(s)	288
Fnu4HI	GCNGC	4 cut(s)	99, 118, 144, 744
FokI	GGATG	8 cut(s)	152, 172, 207, 223, 260, 278, 294, 326
Fsp4HI	GCNGC	4 cut(s)	99, 118, 144, 744
FspBI	CTAG	7 cut(s)	42, 110, 444, 611, 687, 819, 936
GlaI	GCGC	1 cut(s)	759
GluI	GCNGC	4 cut(s)	99, 118, 144, 744
HaeIII	GGCC	1 cut(s)	817
HapII	CCGG	2 cut(s)	587, 602
HgaI	GACGC	3 cut(s)	735, 740, 756
HhaI	GCGC	1 cut(s)	760
Hin1I	GRCGYC	2 cut(s)	723, 767
Hin1II	CATG	3 cut(s)	117, 506, 970
Hin6I	GCGC	1 cut(s)	758
HinP1I	GCGC	1 cut(s)	758
HincII	GTYRAC	2 cut(s)	337, 508
HindII	GTYRAC	2 cut(s)	337, 508
HinfI	GANTC	4 cut(s)	556, 582, 809, 858
HpaII	CCGG	2 cut(s)	587, 602
HphI	GGTGA	1 cut(s)	897
Hpy166II	GTNNAC	5 cut(s)	289, 337, 397, 452, 508
Hpy188I	TCNGA	7 cut(s)	190, 301, 344, 412, 484, 581, 886
Hpy188III	TCNNGA	6 cut(s)	224, 602, 659, 681, 687, 872
Hpy8I	GTNNAC	5 cut(s)	289, 337, 397, 452, 508
Hpy99I	CGWCG	6 cut(s)	230, 262, 725, 728, 751, 772
HpyAV	CCTTC	2 cut(s)	792, 848
HpyCH4III	ACNGT	6 cut(s)	202, 210, 258, 329, 649, 695
HpyCH4IV	ACGT	3 cut(s)	436, 723, 894
HpyCH4V	TGCA	4 cut(s)	117, 143, 844, 930
HpyF10VI	GCNNNNNNNGC	3 cut(s)	757, 764, 778
HpySE526I	ACGT	3 cut(s)	436, 723, 894
Hsp92I	GRCGYC	2 cut(s)	723, 767
Hsp92II	CATG	3 cut(s)	117, 506, 970
HspAI	GCGC	1 cut(s)	758
KflI	GGGWCCC	1 cut(s)	194
Kpn2I	TCCGGA	1 cut(s)	601
Kzo9I	GATC	3 cut(s)	261, 683, 874
LmnI	GCTCC	1 cut(s)	354
LpnPI	CCDG	4 cut(s)	33, 600, 615, 830
Lsp1109I	GCAGC	4 cut(s)	110, 129, 155, 730
LweI	GCATC	2 cut(s)	130, 416
MaeI	CTAG	7 cut(s)	42, 110, 444, 611, 687, 819, 936
MaeII	ACGT	3 cut(s)	436, 723, 894
MaeIII	GTNAC	1 cut(s)	643
MalI	GATC	3 cut(s)	263, 685, 876
MboI	GATC	3 cut(s)	261, 683, 874
MboII	GAAGA	3 cut(s)	425, 899, 933
MfeI	CAATTG	1 cut(s)	550
MhlI	GDGCHC	2 cut(s)	185, 351
MluCI	AATT	4 cut(s)	17, 550, 633, 924
MnlI	CCTC	9 cut(s)	130, 161, 184, 250, 280, 321, 370, 440, 826
MroI	TCCGGA	1 cut(s)	601
MseI	TTAA	1 cut(s)	432
MslI	CAYNNNNRTG	2 cut(s)	138, 344
MspI	CCGG	2 cut(s)	587, 602
MspR9I	CCNGG	1 cut(s)	587
MunI	CAATTG	1 cut(s)	550
Mva1269I	GAATGC	1 cut(s)	846
MvnI	CGCG	3 cut(s)	682, 751, 758
MwoI	GCNNNNNNNGC	3 cut(s)	757, 764, 778
NciI	CCSGG	1 cut(s)	587
NdeII	GATC	3 cut(s)	261, 683, 874
NlaIII	CATG	3 cut(s)	117, 506, 970
NlaIV	GGNNCC	5 cut(s)	52, 195, 196, 251, 322
NmuCI	GTSAC	1 cut(s)	643
NruI	TCGCGA	1 cut(s)	682
NspI	RCATGY	1 cut(s)	117
PaeI	GCATGC	1 cut(s)	117
PctI	GAATGC	1 cut(s)	846
PfeI	GAWTC	4 cut(s)	556, 582, 809, 858
PfoI	TCCNGGA	1 cut(s)	585
PkrI	GCNGC	4 cut(s)	100, 119, 145, 745
PpuMI	RGGWCCY	1 cut(s)	194
Psp5II	RGGWCCY	1 cut(s)	194
PspN4I	GGNNCC	5 cut(s)	52, 195, 196, 251, 322
PspPI	GGNCC	6 cut(s)	51, 194, 230, 249, 301, 320
PspPPI	RGGWCCY	1 cut(s)	194
RruI	TCGCGA	1 cut(s)	682
RsaI	GTAC	1 cut(s)	827
RsaNI	GTAC	1 cut(s)	826
RseI	CAYNNNNRTG	2 cut(s)	138, 344
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	4 cut(s)	99, 118, 144, 744
Sau3AI	GATC	3 cut(s)	261, 683, 874
Sau96I	GGNCC	6 cut(s)	51, 194, 230, 249, 301, 320
ScrFI	CCNGG	1 cut(s)	587
SduI	GDGCHC	2 cut(s)	185, 351
SetI	ASST	9 cut(s)	43, 272, 439, 451, 489, 612, 726, 795, 897
SfaNI	GCATC	2 cut(s)	130, 416
SinI	GGWCC	6 cut(s)	51, 194, 230, 249, 301, 320
SmiMI	CAYNNNNRTG	2 cut(s)	138, 344
SphI	GCATGC	1 cut(s)	117
Sse9I	AATT	4 cut(s)	17, 550, 633, 924
SsiI	CCGC	2 cut(s)	247, 318
SspMI	CTAG	7 cut(s)	42, 110, 444, 611, 687, 819, 936
StyD4I	CCNGG	1 cut(s)	585
StyI	CCWWGG	2 cut(s)	761, 818
TaaI	ACNGT	6 cut(s)	202, 210, 258, 329, 649, 695
TaiI	ACGT	3 cut(s)	439, 726, 897
TaqI	TCGA	3 cut(s)	260, 428, 658
TasI	AATT	4 cut(s)	17, 550, 633, 924
TatI	WGTACW	1 cut(s)	825
TfiI	GAWTC	4 cut(s)	556, 582, 809, 858
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	2 cut(s)	249, 320
TseFI	GTSAC	1 cut(s)	643
TseI	GCWGC	4 cut(s)	98, 117, 143, 743
Tsp45I	GTSAC	1 cut(s)	643
TspDTI	ATGAA	3 cut(s)	30, 491, 867
TspGWI	ACGGA	3 cut(s)	243, 266, 699
TspRI	CASTG	2 cut(s)	249, 320
VpaK11BI	GGWCC	6 cut(s)	51, 194, 230, 249, 301, 320
XapI	RAATTY	2 cut(s)	17, 924
XbaI	TCTAGA	1 cut(s)	686
XceI	RCATGY	1 cut(s)	117
XmaJI	CCTAGG	1 cut(s)	818
XmiI	GTMKAC	1 cut(s)	288
XspI	CTAG	7 cut(s)	42, 110, 444, 611, 687, 819, 936
ZraI	GACGTC	1 cut(s)	724

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.