Rroxscaffold_3G00271740

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
64064588 .. 64069638
5051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00271740.1

Sequence Viewer

Length: 255 bp
ATGAAACTTATCCTCGCCTCCCGTGAACCAAAGAAGCTCGAATTCTTTGGTCTAAGCAAAAGAAATTCGCAGAGCTTGAACGGGCTGCTTTCTCTCCTTCTCGATTCGTCTATTGGGTCGAAGTGTTTGGATGCTGGGAATGTCACTGCGGCCATTGATAGATTCAAGCAATCAATTAATAATTTTATTTCAATTTTAACAACTATAGAGGAACAACTTGATACTCTCGGCAGATCCGTTGATTCGGTAAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.23

Weight (kDa)

8.98

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0032041)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_3G00271740
rosa_samantha Rh5BG354400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 149
AclWI GGATC 1 cut(s) 228
AcoI YGGCCR 1 cut(s) 150
AcsI RAATTY 2 cut(s) 41, 64
AgsI TTSAA 3 cut(s) 79, 166, 192
AluBI AGCT 2 cut(s) 37, 75
AluI AGCT 2 cut(s) 37, 75
AlwI GGATC 1 cut(s) 228
AoxI GGCC 1 cut(s) 150
ApeKI GCWGC 1 cut(s) 85
ApoI RAATTY 2 cut(s) 41, 64
AseI ATTAAT 1 cut(s) 177
BbvI GCAGC 1 cut(s) 72
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 2 cut(s) 86, 150
BlsI GCNGC 2 cut(s) 87, 151
BmsI GCATC 1 cut(s) 121
BseGI GGATG 1 cut(s) 136
BseXI GCAGC 1 cut(s) 72
BseYI CCCAGC 1 cut(s) 134
BshFI GGCC 1 cut(s) 152
BsnI GGCC 1 cut(s) 152
Bsp143I GATC 1 cut(s) 233
BspACI CCGC 1 cut(s) 149
BspANI GGCC 1 cut(s) 152
BspPI GGATC 1 cut(s) 228
BssMI GATC 1 cut(s) 233
BstDEI CTNAG 1 cut(s) 53
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 1 cut(s) 236
BstMBI GATC 1 cut(s) 233
BstSFI CTRYAG 1 cut(s) 204
BstV1I GCAGC 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 233
BstYI RGATCY 1 cut(s) 233
BsuRI GGCC 1 cut(s) 152
BtsCI GGATG 1 cut(s) 136
BtsI GCAGTG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 144
CviJI RGCY 4 cut(s) 37, 75, 85, 152
CviKI_1 RGCY 4 cut(s) 37, 75, 85, 152
DdeI CTNAG 1 cut(s) 53
DpnI GATC 1 cut(s) 235
DpnII GATC 1 cut(s) 233
EaeI YGGCCR 1 cut(s) 150
EcoRI GAATTC 1 cut(s) 41
FaiI YATR 1 cut(s) 206
Fnu4HI GCNGC 2 cut(s) 86, 150
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 2 cut(s) 86, 150
GluI GCNGC 2 cut(s) 86, 150
GsaI CCCAGC 1 cut(s) 138
HaeIII GGCC 1 cut(s) 152
HinfI GANTC 3 cut(s) 104, 162, 242
Hpy166II GTNNAC 1 cut(s) 26
Hpy188III TCNNGA 1 cut(s) 101
Hpy8I GTNNAC 1 cut(s) 26
HpyAV CCTTC 1 cut(s) 107
HpyF3I CTNAG 1 cut(s) 53
Kzo9I GATC 1 cut(s) 233
LpnPI CCDG 1 cut(s) 120
Lsp1109I GCAGC 1 cut(s) 72
LweI GCATC 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 142
MalI GATC 1 cut(s) 235
MboI GATC 1 cut(s) 233
MflI RGATCY 1 cut(s) 233
MluCI AATT 5 cut(s) 41, 64, 174, 181, 192
MnlI CCTC 3 cut(s) 23, 28, 202
MseI TTAA 2 cut(s) 177, 197
NdeII GATC 1 cut(s) 233
NmeAIII GCCGAG 1 cut(s) 207
NmuCI GTSAC 1 cut(s) 142
PcsI WCGNNNNNNNCGW 1 cut(s) 234
PfeI GAWTC 3 cut(s) 104, 162, 242
PkrI GCNGC 2 cut(s) 87, 151
PshBI ATTAAT 1 cut(s) 177
PspFI CCCAGC 1 cut(s) 134
PsuI RGATCY 1 cut(s) 233
SaqAI TTAA 2 cut(s) 177, 197
SatI GCNGC 2 cut(s) 86, 150
Sau3AI GATC 1 cut(s) 233
SetI ASST 3 cut(s) 39, 77, 254
SfaNI GCATC 1 cut(s) 121
SfcI CTRYAG 1 cut(s) 204
Sse9I AATT 5 cut(s) 41, 64, 174, 181, 192
SsiI CCGC 1 cut(s) 149
TaqI TCGA 3 cut(s) 39, 102, 119
TasI AATT 5 cut(s) 41, 64, 174, 181, 192
TauI GCSGC 1 cut(s) 152
TfiI GAWTC 3 cut(s) 104, 162, 242
Tru1I TTAA 2 cut(s) 177, 197
Tru9I TTAA 2 cut(s) 177, 197
TscAI CASTG 1 cut(s) 151
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 1 cut(s) 85
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 226
TspRI CASTG 1 cut(s) 151
VspI ATTAAT 1 cut(s) 177
XapI RAATTY 2 cut(s) 41, 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.