Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0032041

Physical Location & Seq

Genomic Coordinates Reverse (-)

54850195 .. 54856307

Gene Structure 6113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG354400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTTGTATATGAATGGATTGGATTGTGGTGGCGGTGGTGTGTTGAGTTCCCATCCCCCCTTTTCTCCACCTTTTCTTATCCTCGCCTCCTCTGAACCAAAGAAGCTCGAATTCTTTGGTCTGAGCAAAAGACATTTGCAGAGCTTGAACGGGTTGCTTTCTCTCCTTCTCGATTTGTCTATTGGGCCGAAGTGTTTGGATGCTGGGAATGTCACTGGGGCCATTGATAGATTCAAGCAATTAATTCATAATTTTATTTCAGTTTTAACAACTATAGAGGAACAACTTGAGGCTCTCGGCATAGCTGTTGTTTCTGGTCAGATATGCAGAGATACAAAAGGATTTGTGGGTGCTGCAAGAGGACTCAAGTATTTACATGAAAAGACGGACCCCCATATCATTCATCATGATATCAAGTCCAGCAATTGTTCTAGGAACCTTTGGTTATCATGCCCCAATGTGAACATCAGCTTAGCCATTAAATACTTACTACCTACGATTTCAGAGGAGAATTCCCCGCCAAGGCTGTTGCAAAGATGGCTGCAGTTGCTGCCTTGTGTGTGCAATATGAGGCTGATTTCCGCACAAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04626 map04626

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

197

Amino Acids

21.61

Weight (kDa)

8.49

Isoelectric Point (pI)

55.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0032041)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_3G00271740
rosa_samantha	Rh5BG354400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	33, 518, 582
AcsI	RAATTY	2 cut(s)	110, 511
AfiI	CCNNNNNNNGG	1 cut(s)	522
AgsI	TTSAA	2 cut(s)	148, 235
AleI	CACNNNNGTG	1 cut(s)	589
AluBI	AGCT	4 cut(s)	106, 144, 305, 471
AluI	AGCT	4 cut(s)	106, 144, 305, 471
AlwNI	CAGNNNCTG	1 cut(s)	550
AoxI	GGCC	2 cut(s)	185, 219
ApeKI	GCWGC	3 cut(s)	353, 541, 550
ApoI	RAATTY	2 cut(s)	110, 511
AseI	ATTAAT	1 cut(s)	242
AspS9I	GGNCC	3 cut(s)	185, 219, 388
AvaII	GGWCC	1 cut(s)	388
BbvI	GCAGC	3 cut(s)	340, 528, 537
BccI	CCATC	2 cut(s)	60, 531
BfaI	CTAG	1 cut(s)	432
BfmI	CTRYAG	2 cut(s)	273, 542
BisI	GCNGC	3 cut(s)	354, 542, 551
BlpI	GCTNAGC	1 cut(s)	472
BlsI	GCNGC	3 cut(s)	355, 543, 552
Bme18I	GGWCC	1 cut(s)	388
BmgT120I	GGNCC	3 cut(s)	185, 219, 388
BmiI	GGNNCC	3 cut(s)	220, 390, 437
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	190
BmuI	ACTGGG	1 cut(s)	225
Bpu1102I	GCTNAGC	1 cut(s)	472
BpuEI	CTTGAG	2 cut(s)	308, 350
BsaJI	CCNNGG	1 cut(s)	521
Bsc4I	CCNNNNNNNGG	1 cut(s)	522
Bse1I	ACTGG	1 cut(s)	220
BseDI	CCNNGG	1 cut(s)	521
BseGI	GGATG	2 cut(s)	52, 205
BseLI	CCNNNNNNNGG	1 cut(s)	522
BseMII	CTCAG	1 cut(s)	113
BseNI	ACTGG	1 cut(s)	220
BseRI	GAGGAG	2 cut(s)	79, 521
BseXI	GCAGC	3 cut(s)	340, 528, 537
BseYI	CCCAGC	1 cut(s)	203
BshFI	GGCC	2 cut(s)	187, 221
BslI	CCNNNNNNNGG	1 cut(s)	522
BsnI	GGCC	2 cut(s)	187, 221
Bsp1720I	GCTNAGC	1 cut(s)	472
BspACI	CCGC	3 cut(s)	33, 518, 582
BspANI	GGCC	2 cut(s)	187, 221
BspCNI	CTCAG	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	406
BspLI	GGNNCC	3 cut(s)	220, 390, 437
BspMAI	CTGCAG	1 cut(s)	546
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	1 cut(s)	521
BssT1I	CCWWGG	1 cut(s)	521
BstAPI	GCANNNNNTGC	1 cut(s)	550
BstDEI	CTNAG	2 cut(s)	122, 472
BstF5I	GGATG	2 cut(s)	52, 205
BstMWI	GCNNNNNNNGC	3 cut(s)	538, 547, 550
BstSFI	CTRYAG	2 cut(s)	273, 542
BstV1I	GCAGC	3 cut(s)	340, 528, 537
BsuRI	GGCC	2 cut(s)	187, 221
BtsCI	GGATG	2 cut(s)	52, 205
BtsIMutI	CAGTG	1 cut(s)	213
CaiI	CAGNNNCTG	1 cut(s)	550
CciI	TCATGA	1 cut(s)	406
Cfr13I	GGNCC	3 cut(s)	185, 219, 388
CviAII	CATG	3 cut(s)	377, 407, 450
DdeI	CTNAG	2 cut(s)	122, 472
Eco130I	CCWWGG	1 cut(s)	521
Eco32I	GATATC	1 cut(s)	412
Eco47I	GGWCC	1 cut(s)	388
EcoRI	GAATTC	2 cut(s)	110, 511
EcoRV	GATATC	1 cut(s)	412
EcoT14I	CCWWGG	1 cut(s)	521
ErhI	CCWWGG	1 cut(s)	521
FaeI	CATG	3 cut(s)	380, 410, 453
FatI	CATG	3 cut(s)	376, 406, 449
FauI	CCCGC	1 cut(s)	525
Fnu4HI	GCNGC	3 cut(s)	354, 542, 551
FokI	GGATG	2 cut(s)	39, 212
Fsp4HI	GCNGC	3 cut(s)	354, 542, 551
FspBI	CTAG	1 cut(s)	432
GluI	GCNGC	3 cut(s)	354, 542, 551
GsaI	CCCAGC	1 cut(s)	207
HaeIII	GGCC	2 cut(s)	187, 221
Hin1II	CATG	3 cut(s)	380, 410, 453
HinfI	GANTC	2 cut(s)	231, 363
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	4 cut(s)	94, 123, 321, 505
Hpy188III	TCNNGA	2 cut(s)	170, 407
Hpy8I	GTNNAC	1 cut(s)	463
HpyAV	CCTTC	1 cut(s)	176
HpyCH4V	TGCA	6 cut(s)	139, 327, 356, 532, 544, 564
HpyF10VI	GCNNNNNNNGC	3 cut(s)	538, 547, 550
HpyF3I	CTNAG	2 cut(s)	122, 472
Hsp92II	CATG	3 cut(s)	380, 410, 453
LpnPI	CCDG	4 cut(s)	189, 201, 300, 433
Lsp1109I	GCAGC	3 cut(s)	340, 528, 537
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	432
MaeIII	GTNAC	1 cut(s)	211
MfeI	CAATTG	1 cut(s)	424
MluCI	AATT	6 cut(s)	110, 239, 243, 250, 424, 511
MlyI	GAGTC	1 cut(s)	357
MnlI	CCTC	8 cut(s)	92, 97, 100, 271, 283, 353, 499, 564
MseI	TTAA	3 cut(s)	242, 266, 480
MslI	CAYNNNNRTG	1 cut(s)	589
MunI	CAATTG	1 cut(s)	424
MwoI	GCNNNNNNNGC	3 cut(s)	538, 547, 550
NlaIII	CATG	3 cut(s)	380, 410, 453
NlaIV	GGNNCC	3 cut(s)	220, 390, 437
NmeAIII	GCCGAG	1 cut(s)	276
NmuCI	GTSAC	1 cut(s)	211
OliI	CACNNNNGTG	1 cut(s)	589
PagI	TCATGA	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	231
PkrI	GCNGC	3 cut(s)	355, 543, 552
PleI	GAGTC	1 cut(s)	357
PpsI	GAGTC	1 cut(s)	357
PshBI	ATTAAT	1 cut(s)	242
PspFI	CCCAGC	1 cut(s)	203
PspN4I	GGNNCC	3 cut(s)	220, 390, 437
PspPI	GGNCC	3 cut(s)	185, 219, 388
PstI	CTGCAG	1 cut(s)	546
PstNI	CAGNNNCTG	1 cut(s)	550
RseI	CAYNNNNRTG	1 cut(s)	589
SaqAI	TTAA	3 cut(s)	242, 266, 480
SatI	GCNGC	3 cut(s)	354, 542, 551
Sau96I	GGNCC	3 cut(s)	185, 219, 388
SchI	GAGTC	1 cut(s)	357
SetI	ASST	7 cut(s)	73, 108, 146, 307, 441, 473, 496
SfaNI	GCATC	1 cut(s)	190
SfcI	CTRYAG	2 cut(s)	273, 542
SinI	GGWCC	1 cut(s)	388
SmiMI	CAYNNNNRTG	1 cut(s)	589
SmlI	CTYRAG	2 cut(s)	287, 365
SmoI	CTYRAG	2 cut(s)	287, 365
Sse9I	AATT	6 cut(s)	110, 239, 243, 250, 424, 511
SsiI	CCGC	3 cut(s)	33, 518, 582
SspMI	CTAG	1 cut(s)	432
StyI	CCWWGG	1 cut(s)	521
TaqI	TCGA	2 cut(s)	108, 171
TasI	AATT	6 cut(s)	110, 239, 243, 250, 424, 511
TfiI	GAWTC	1 cut(s)	231
Tru1I	TTAA	3 cut(s)	242, 266, 480
Tru9I	TTAA	3 cut(s)	242, 266, 480
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	1 cut(s)	211
TseI	GCWGC	3 cut(s)	353, 541, 550
Tsp45I	GTSAC	1 cut(s)	211
TspDTI	ATGAA	4 cut(s)	26, 236, 392, 393
TspGWI	ACGGA	1 cut(s)	401
TspRI	CASTG	1 cut(s)	220
VpaK11BI	GGWCC	1 cut(s)	388
VspI	ATTAAT	1 cut(s)	242
XapI	RAATTY	2 cut(s)	110, 511
XspI	CTAG	1 cut(s)	432

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.