Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006009

Physical Location & Seq

Genomic Coordinates Forward (+)

64701017 .. 64713995

Gene Structure 12979 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00272690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2340 bp

ATGGACCCTCAACACCAACAATGGCGTCCCAGGCCCCCAATCCCAGGTACCCTCTGCCCAATTTGCTCAATTTCTCACTTCCCCTTTTGCCCTCCGCCCCCACCCTTCCCTCAAAACCCTATCTTCCCTCACGATTCCGCCAACTCCTTCCAAAGATCCGGCCTTGATCCGTATACAAGGCCCATCGCTACTAATACTCCGGCCCCGTTCCCAAATCAAACGCCGTGGCAGAGAAACCCTAATTTCGGATACGGGAACTTTCAAGGCTTCGCGCCTCCTCCTCCTCCGCCGCCGCCACCGCCACAACCTCAGCCACCTCCGCCTCCGCCGCCGCCGTACGAATACGGTGGCAATGGCTACGTTAATGACGGTGATAGGAGCTTTAAGAGGGCGAGGATCGATGACTTTGGTTCCGGTCCGGGTTTTGGGAGCGAGTTTAACCCGAATAATGTGGGGAATTTATCAGAAGATGAGCGACGATTGAAGCTGATTCACGATCACGGCGGGGCCGGCTTAGTTTCGGGGAGTAATCAGGGTTGTAATGGCGAAACTAATAGGCATAGTCAACAAGAGAGTGGAAAACATGGTGTTAATGTTAATAATAATGTGCAGAATAATGGGAATTTCGCTTTGAATTCTATAGTAAATGAACCACAACATTCGCATTTGAAACTTTGGCAACTACATCCCAGCAATCCCAGCAACGCAATGCAGCGGCATTCGGCACATTTGAAGCATGATTTTCATGCCTCCGGGCATCAACATGGAGGCTACTTTCATCCCCCTGCGGGTCATATGCCAGCTCTGAGGCCAATCAGTGGGCAGCCTCCTCTTCCAGTTACTCCACCGCCTCCTCTTCCATCGAAACCGCCAGCTTCATTGTTTCCTGTTCATGTTGGTTCCTCGCCGATGATGTCTACAGCTTATCAACCGAGTCCTGAAGCTGCTCACCACTCCATGCCGCAGCCGCCTTATTTCCATAGTAAGCCATTTTCACATGTCTCTACTGGATATGTTATGGAGTTTCCCAAGGAGTCTCATGTTTTCCATCAAGCATTACCAAAGCAGTATGTGGTAGAGGGACAGCCATTTCCACAGAAGCATTTGTCTTTGGATAAGCCAAAAGTCATCGATGCTTTGCACTTATTTAAGCAGCCACATCGAGTCACCCGCCCTGATCATTTTGTGATAATCCTACGAGGGCTTCCAGGTAGTGGAAAGAGCTACTTAGCAAAGCTGTTGCGTGACCTAGAGGTTGAAAGTGGTGGTGGTGCTCCACGAATTCATTCCATGGATGATTATTTTATGACAGAAGTAGAAAAGGTGGAAGAAAATGATGCTTCAAAATCTTCAAGTTCATCTAGAGGCAAGAAGCCTGTAGTGAAGAAGGTGATGGAGTATTGTTATGAACCTGAAATGCAGGAGGCTTATCGGTTGAGTATGCTGAAGGCATTTAAGAAGACCCTTGAGGATGGTGTTTTCACCTTCGTAATCGTGGATGACCGCAATCTGCGGGTAGCTGATTTTGCTCAATTTTGGGCAATTGCAAAGAGTTCGGGGTATGAAGTTTATATACTAGAAGCACCATATAAGGATCCTGCGGGCTGCGCAGCTAGGAATGTGCATGGCTTTACTCAAGAAGACATACAGAAGATGGCTGAACAGTGGGAGGAATCTCCATCCATATACTTGCAATTGGACGCCAAGTCATTGTTTCATGGAGATGATCTGAAGGAAAGTGGTATTCAAGAGGCAAATGCCGATAATGATGATGTGAAGAGCTTAGATGCTGAAGAAGATCACCCAAGTGTAGAAGTGAAAGAACTAGGAAGGAGTAAATGGTCAGAAATAATAGATGATGATGATACAGATAAAATTGAAGAAGTGAAGGGTTGGCAATACTGGGTTTTCAATAGCAGCAGCAAAGAAGGCAAATGTATCAAGAGAACCCAGTGGCAACACGAGGAAACTCTCCCCGAATCCGCTCTGGCATCGAAAGCCTTCCGCCTTCATCGACCGCGACCCCTCCCTCAAGTCTTTGGGTATCACATTGATACTTTTGAGAATTCGGGCAATTGGGGTGATCCCCAAGTCTATAAGAAGATGATTTTTAACATAGAATTGGTACAAGAGCAATCATTTATTTGCATTGTGCCAAACCTGTTATTAAATTTAGGAAGCAATGCATCATCAGAATGGGATGAACTGGAACTTAAAATTTCTCAGGTTTTGTCTACCCGGAAGGTCAGTGAAGATATCAAAATTGAAATACAAAAATGCAATAAGAGGTTCAGTTTGAGCTTCATATGTACTAACATGGCTTGCCTTCATCACATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

779

Amino Acids

87.39

Weight (kDa)

6.25

Isoelectric Point (pI)

49.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006009)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G62760 AT5G62760 AT5G62760 AT5G62760 AT5G62760 AT5G62760
fragaria_vesca	FvH4_5g15410 FvH4_5g15410 FvH4_5g15410 FvH4_5g15410
malus_domestica	MD06G1188800.v1.1 MD14G1195600.v1.1
prunus_persica	Prupe.5G187100_v2.0.a1 Prupe.5G187100_v2.0.a1 Prupe.5G187100_v2.0.a1
pyrus_communis	pycom06g16760 pycom14g16220
rosa_chinensis	RchiOBHm_Chr7g0180671
rosa_laevigata	RLG00000005244
rosa_multiflora	Rmu_sc0023372.1_g000006
rosa_roxburghii	Rroxscaffold_3G00272690
rosa_rugosa	Rorug06G0434700
rosa_samantha	Rh7AG036200 Rh7BG036100 Rh7CG037700 Rh7DG036300
rosa_wichuraiana	Rw7G002990

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1609
Acc65I	GGTACC	1 cut(s)	47
AccB1I	GGYRCC	1 cut(s)	47
AccB7I	CCANNNNNTGG	2 cut(s)	818, 1214
AccBSI	CCGCTC	1 cut(s)	1985
AccI	GTMKAC	3 cut(s)	173, 917, 2234
AccII	CGCG	2 cut(s)	272, 2020
AclWI	GGATC	6 cut(s)	150, 161, 404, 1589, 1602, 2078
AcsI	RAATTY	7 cut(s)	457, 622, 634, 1281, 2065, 2170, 2217
AcuI	CTGAAG	4 cut(s)	960, 1466, 1751, 1812
AcyI	GRCGYC	2 cut(s)	25, 1701
AfaI	GTAC	4 cut(s)	49, 338, 2127, 2311
AfiI	CCNNNNNNNGG	6 cut(s)	44, 245, 425, 788, 818, 1214
AflIII	ACRYGT	1 cut(s)	997
AhdI	GACNNNNNGTC	1 cut(s)	1705
AjnI	CCWGG	3 cut(s)	29, 43, 1207
AleI	CACNNNNGTG	1 cut(s)	1806
Alw21I	GWGCWC	1 cut(s)	1276
Alw26I	GTCTC	2 cut(s)	1006, 1041
AlwI	GGATC	6 cut(s)	150, 161, 404, 1589, 1602, 2078
AoxI	GGCC	6 cut(s)	32, 160, 179, 201, 507, 809
ApeKI	GCWGC	9 cut(s)	712, 823, 944, 964, 1153, 1605, 1610, 1917, 1920
ApoI	RAATTY	7 cut(s)	457, 622, 634, 1281, 2065, 2170, 2217
Asp700I	GAANNNNTTC	2 cut(s)	1285, 2000
Asp718I	GGTACC	1 cut(s)	47
AspLEI	GCGC	2 cut(s)	274, 1610
AspS9I	GGNCC	6 cut(s)	4, 33, 180, 202, 416, 507
AsuC2I	CCSGG	3 cut(s)	420, 754, 2239
AsuHPI	GGTGA	7 cut(s)	383, 941, 1159, 1402, 1474, 1793, 2093
AvaII	GGWCC	2 cut(s)	4, 416
BamHI	GGATCC	1 cut(s)	1594
BanI	GGYRCC	1 cut(s)	47
BarI	GAAGNNNNNNTAC	2 cut(s)	1557, 1589
BauI	CACGAG	1 cut(s)	1961
BbsI	GAAGAC	2 cut(s)	1466, 1647
Bbv12I	GWGCWC	1 cut(s)	1276
BbvCI	CCTCAGC	1 cut(s)	309
BbvI	GCAGC	9 cut(s)	724, 835, 931, 976, 1165, 1592, 1622, 1929, 1932
BccI	CCATC	7 cut(s)	191, 868, 1056, 1387, 1466, 1648, 1687
BceAI	ACGGC	3 cut(s)	208, 319, 517
BcgI	CGANNNNNNTGC	4 cut(s)	1142, 1176, 1536, 1570
BciT130I	CCWGG	3 cut(s)	31, 45, 1209
BciVI	GTATCC	1 cut(s)	242
BclI	TGATCA	1 cut(s)	1177
BcnI	CCSGG	3 cut(s)	420, 754, 2239
BcoDI	GTCTC	2 cut(s)	1006, 1041
BfaI	CTAG	5 cut(s)	1250, 1362, 1577, 1614, 1826
BfmI	CTRYAG	3 cut(s)	639, 918, 1377
BfuI	GTATCC	1 cut(s)	242
Bme1390I	CCNGG	6 cut(s)	31, 45, 420, 754, 1209, 2239
Bme18I	GGWCC	2 cut(s)	4, 416
BmeRI	GACNNNNNGTC	1 cut(s)	1705
BmgT120I	GGNCC	6 cut(s)	4, 33, 180, 202, 416, 507
BmiI	GGNNCC	8 cut(s)	6, 35, 49, 204, 412, 508, 901, 1596
BmrFI	CCNGG	6 cut(s)	31, 45, 420, 754, 1209, 2239
BmrI	ACTGGG	2 cut(s)	1912, 1945
BmsI	GCATC	6 cut(s)	766, 1123, 1327, 1777, 2000, 2195
BmuI	ACTGGG	2 cut(s)	1912, 1945
BpiI	GAAGAC	2 cut(s)	1466, 1647
Bpu10I	CCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	3 cut(s)	1487, 1620, 2016
BpuMI	CCSGG	3 cut(s)	420, 754, 2239
Bsa29I	ATCGAT	2 cut(s)	399, 1131
BsaHI	GRCGYC	2 cut(s)	25, 1701
BsaJI	CCNNGG	5 cut(s)	29, 43, 224, 1029, 1290
BsaWI	WCCGGW	1 cut(s)	413
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	6 cut(s)	44, 245, 425, 788, 818, 1214
Bse118I	RCCGGY	1 cut(s)	509
Bse1I	ACTGG	5 cut(s)	836, 1012, 1907, 1951, 2211
Bse3DI	GCAATG	3 cut(s)	358, 714, 2188
BseBI	CCWGG	3 cut(s)	31, 45, 1209
BseCI	ATCGAT	2 cut(s)	399, 1131
BseDI	CCNNGG	5 cut(s)	29, 43, 224, 1029, 1290
BseGI	GGATG	7 cut(s)	685, 778, 1300, 1477, 1504, 1679, 2206
BseLI	CCNNNNNNNGG	6 cut(s)	44, 245, 425, 788, 818, 1214
BseMI	GCAATG	3 cut(s)	358, 714, 2188
BseMII	CTCAG	3 cut(s)	323, 797, 2237
BseNI	ACTGG	5 cut(s)	836, 1012, 1907, 1951, 2211
BseRI	GAGGAG	5 cut(s)	267, 270, 273, 819, 843
BseXI	GCAGC	9 cut(s)	724, 835, 931, 976, 1165, 1592, 1622, 1929, 1932
BseYI	CCCAGC	2 cut(s)	689, 698
BsgI	GTGCAG	1 cut(s)	629
Bsh1236I	CGCG	2 cut(s)	272, 2020
Bsh1285I	CGRYCG	1 cut(s)	2018
BshFI	GGCC	6 cut(s)	34, 162, 181, 203, 509, 811
BshNI	GGYRCC	1 cut(s)	47
BshVI	ATCGAT	2 cut(s)	399, 1131
BsiEI	CGRYCG	1 cut(s)	2018
BsiHKAI	GWGCWC	1 cut(s)	1276
BsiSI	CCGG	7 cut(s)	159, 200, 414, 419, 510, 753, 2239
BsiWI	CGTACG	1 cut(s)	336
BslFI	GGGAC	2 cut(s)	12, 1095
BslI	CCNNNNNNNGG	6 cut(s)	44, 245, 425, 788, 818, 1214
BsmAI	GTCTC	2 cut(s)	1006, 1041
BsmFI	GGGAC	2 cut(s)	12, 1095
BsmI	GAATGC	1 cut(s)	718
BsnI	GGCC	6 cut(s)	34, 162, 181, 203, 509, 811
Bsp1286I	GDGCHC	1 cut(s)	1276
Bsp143I	GATC	9 cut(s)	155, 166, 396, 496, 1177, 1594, 1726, 1798, 2083
Bsp19I	CCATGG	1 cut(s)	1290
BspANI	GGCC	6 cut(s)	34, 162, 181, 203, 509, 811
BspCNI	CTCAG	3 cut(s)	322, 798, 2236
BspDI	ATCGAT	2 cut(s)	399, 1131
BspFNI	CGCG	2 cut(s)	272, 2020
BspLI	GGNNCC	8 cut(s)	6, 35, 49, 204, 412, 508, 901, 1596
BspPI	GGATC	6 cut(s)	150, 161, 404, 1589, 1602, 2078
BspQI	GCTCTTC	1 cut(s)	1772
BspT107I	GGYRCC	1 cut(s)	47
BsrBI	CCGCTC	1 cut(s)	1985
BsrDI	GCAATG	3 cut(s)	358, 714, 2188
BsrFI	RCCGGY	1 cut(s)	509
BsrI	ACTGG	5 cut(s)	836, 1012, 1907, 1951, 2211
BssAI	RCCGGY	1 cut(s)	509
BssECI	CCNNGG	5 cut(s)	29, 43, 224, 1029, 1290
BssMI	GATC	9 cut(s)	155, 166, 396, 496, 1177, 1594, 1726, 1798, 2083
BssNAI	GTATAC	1 cut(s)	174
BssNI	GRCGYC	2 cut(s)	25, 1701
BssSI	CACGAG	1 cut(s)	1961
BssT1I	CCWWGG	2 cut(s)	1029, 1290
Bst1107I	GTATAC	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	1961
Bst2UI	CCWGG	3 cut(s)	31, 45, 1209
Bst4CI	ACNGT	3 cut(s)	347, 371, 1665
Bst6I	CTCTTC	3 cut(s)	837, 861, 1772
BstACI	GRCGYC	2 cut(s)	25, 1701
BstC8I	GCNNGC	5 cut(s)	511, 801, 873, 1603, 2323
BstDEI	CTNAG	6 cut(s)	309, 514, 806, 1228, 1783, 2223
BstDSI	CCRYGG	2 cut(s)	224, 1290
BstF5I	GGATG	7 cut(s)	685, 778, 1300, 1477, 1504, 1679, 2206
BstFNI	CGCG	2 cut(s)	272, 2020
BstHHI	GCGC	2 cut(s)	274, 1610
BstKTI	GATC	9 cut(s)	158, 169, 399, 499, 1180, 1597, 1729, 1801, 2086
BstMAI	GTCTC	2 cut(s)	1006, 1041
BstMBI	GATC	9 cut(s)	155, 166, 396, 496, 1177, 1594, 1726, 1798, 2083
BstMCI	CGRYCG	1 cut(s)	2018
BstNI	CCWGG	3 cut(s)	31, 45, 1209
BstNSI	RCATGY	1 cut(s)	1001
BstSCI	CCNGG	6 cut(s)	29, 43, 418, 752, 1207, 2237
BstSFI	CTRYAG	3 cut(s)	639, 918, 1377
BstUI	CGCG	2 cut(s)	272, 2020
BstV1I	GCAGC	9 cut(s)	724, 835, 931, 976, 1165, 1592, 1622, 1929, 1932
BstV2I	GAAGAC	2 cut(s)	1466, 1647
BstX2I	RGATCY	2 cut(s)	155, 1594
BstYI	RGATCY	2 cut(s)	155, 1594
BstZ17I	GTATAC	1 cut(s)	174
Bsu15I	ATCGAT	2 cut(s)	399, 1131
BsuI	GTATCC	1 cut(s)	242
BsuRI	GGCC	6 cut(s)	34, 162, 181, 203, 509, 811
BsuTUI	ATCGAT	2 cut(s)	399, 1131
BtgI	CCRYGG	2 cut(s)	224, 1290
BtgZI	GCGATG	1 cut(s)	169
BtsCI	GGATG	7 cut(s)	685, 778, 1300, 1477, 1504, 1679, 2206
BtsIMutI	CAGTG	4 cut(s)	823, 1670, 1958, 2254
Cac8I	GCNNGC	5 cut(s)	511, 801, 873, 1603, 2323
CfoI	GCGC	2 cut(s)	274, 1610
Cfr10I	RCCGGY	1 cut(s)	509
Cfr13I	GGNCC	6 cut(s)	4, 33, 180, 202, 416, 507
ClaI	ATCGAT	2 cut(s)	399, 1131
CpoI	CGGWCCG	1 cut(s)	416
CseI	GACGC	2 cut(s)	14, 1709
Csp6I	GTAC	4 cut(s)	48, 337, 2126, 2310
CspCI	CAANNNNNGTGG	2 cut(s)	206, 241
CspI	CGGWCCG	1 cut(s)	416
CviQI	GTAC	4 cut(s)	48, 337, 2126, 2310
DdeI	CTNAG	6 cut(s)	309, 514, 806, 1228, 1783, 2223
DpnI	GATC	9 cut(s)	157, 168, 398, 498, 1179, 1596, 1728, 1800, 2085
DpnII	GATC	9 cut(s)	155, 166, 396, 496, 1177, 1594, 1726, 1798, 2083
DriI	GACNNNNNGTC	1 cut(s)	1705
Eam1104I	CTCTTC	3 cut(s)	837, 861, 1772
Eam1105I	GACNNNNNGTC	1 cut(s)	1705
EarI	CTCTTC	3 cut(s)	837, 861, 1772
EciI	GGCGGA	6 cut(s)	84, 127, 276, 309, 315, 1994
Eco130I	CCWWGG	2 cut(s)	1029, 1290
Eco32I	GATATC	1 cut(s)	2257
Eco47I	GGWCC	2 cut(s)	4, 416
Eco57I	CTGAAG	4 cut(s)	960, 1466, 1751, 1812
EcoO109I	RGGNCCY	1 cut(s)	33
EcoRI	GAATTC	3 cut(s)	634, 1281, 2065
EcoRII	CCWGG	3 cut(s)	29, 43, 1207
EcoRV	GATATC	1 cut(s)	2257
EcoT14I	CCWWGG	2 cut(s)	1029, 1290
EcoT22I	ATGCAT	1 cut(s)	2188
ErhI	CCWWGG	2 cut(s)	1029, 1290
FalI	AAGNNNNNCTT	2 cut(s)	1211, 1243
FaqI	GGGAC	2 cut(s)	12, 1095
FauI	CCCGC	5 cut(s)	497, 781, 1178, 1506, 1594
FauNDI	CATATG	2 cut(s)	795, 2306
FbaI	TGATCA	1 cut(s)	1177
FblI	GTMKAC	3 cut(s)	173, 917, 2234
FokI	GGATG	7 cut(s)	672, 765, 1307, 1484, 1511, 1666, 2213
FspBI	CTAG	5 cut(s)	1250, 1362, 1577, 1614, 1826
FspI	TGCGCA	1 cut(s)	1609
GlaI	GCGC	2 cut(s)	273, 1609
GsaI	CCCAGC	2 cut(s)	693, 702
HaeIII	GGCC	6 cut(s)	34, 162, 181, 203, 509, 811
HapII	CCGG	7 cut(s)	159, 200, 414, 419, 510, 753, 2239
HgaI	GACGC	2 cut(s)	14, 1709
HhaI	GCGC	2 cut(s)	274, 1610
Hin1I	GRCGYC	2 cut(s)	25, 1701
Hin6I	GCGC	2 cut(s)	272, 1608
HinP1I	GCGC	2 cut(s)	272, 1608
HincII	GTYRAC	1 cut(s)	566
HindII	GTYRAC	1 cut(s)	566
HinfI	GANTC	7 cut(s)	134, 490, 934, 1034, 1164, 1673, 1979
HpaII	CCGG	7 cut(s)	159, 200, 414, 419, 510, 753, 2239
HphI	GGTGA	7 cut(s)	383, 941, 1159, 1402, 1474, 1793, 2093
Hpy166II	GTNNAC	4 cut(s)	174, 566, 918, 2235
Hpy188I	TCNGA	6 cut(s)	248, 466, 807, 1731, 1846, 2194
Hpy188III	TCNNGA	7 cut(s)	131, 494, 938, 1362, 1637, 1748, 1942
Hpy8I	GTNNAC	4 cut(s)	174, 566, 918, 2235
Hpy99I	CGWCG	1 cut(s)	480
HpyCH4III	ACNGT	3 cut(s)	347, 371, 1665
HpyCH4IV	ACGT	1 cut(s)	360
HpyF3I	CTNAG	6 cut(s)	309, 514, 806, 1228, 1783, 2223
HpySE526I	ACGT	1 cut(s)	360
Hsp92I	GRCGYC	2 cut(s)	25, 1701
HspAI	GCGC	2 cut(s)	272, 1608
KpnI	GGTACC	1 cut(s)	51
KroI	GCCGGC	1 cut(s)	509
KroNI	GCCGGC	1 cut(s)	511
Ksp22I	TGATCA	1 cut(s)	1177
Kzo9I	GATC	9 cut(s)	155, 166, 396, 496, 1177, 1594, 1726, 1798, 2083
LguI	GCTCTTC	1 cut(s)	1772
LmnI	GCTCC	3 cut(s)	378, 429, 1279
Lsp1109I	GCAGC	9 cut(s)	724, 835, 931, 976, 1165, 1592, 1622, 1929, 1932
LweI	GCATC	6 cut(s)	766, 1123, 1327, 1777, 2000, 2195
MaeI	CTAG	5 cut(s)	1250, 1362, 1577, 1614, 1826
MaeII	ACGT	1 cut(s)	360
MaeIII	GTNAC	3 cut(s)	838, 1165, 1244
MalI	GATC	9 cut(s)	157, 168, 398, 498, 1179, 1596, 1728, 1800, 2085
MbiI	CCGCTC	1 cut(s)	1985
MboI	GATC	9 cut(s)	155, 166, 396, 496, 1177, 1594, 1726, 1798, 2083
MfeI	CAATTG	3 cut(s)	1542, 1694, 2074
MflI	RGATCY	2 cut(s)	155, 1594
MhlI	GDGCHC	1 cut(s)	1276
MlyI	GAGTC	3 cut(s)	943, 1043, 1173
Mph1103I	ATGCAT	1 cut(s)	2188
MroNI	GCCGGC	1 cut(s)	509
MroXI	GAANNNNTTC	2 cut(s)	1285, 2000
MslI	CAYNNNNRTG	4 cut(s)	762, 1722, 1806, 2194
MspA1I	CMGCKG	1 cut(s)	715
MspI	CCGG	7 cut(s)	159, 200, 414, 419, 510, 753, 2239
MspR9I	CCNGG	6 cut(s)	31, 45, 420, 754, 1209, 2239
MunI	CAATTG	3 cut(s)	1542, 1694, 2074
Mva1269I	GAATGC	1 cut(s)	718
MvaI	CCWGG	3 cut(s)	31, 45, 1209
MvnI	CGCG	2 cut(s)	272, 2020
NaeI	GCCGGC	1 cut(s)	511
NciI	CCSGG	3 cut(s)	420, 754, 2239
NcoI	CCATGG	1 cut(s)	1290
NdeI	CATATG	2 cut(s)	795, 2306
NdeII	GATC	9 cut(s)	155, 166, 396, 496, 1177, 1594, 1726, 1798, 2083
NgoMIV	GCCGGC	1 cut(s)	509
NlaIV	GGNNCC	8 cut(s)	6, 35, 49, 204, 412, 508, 901, 1596
NmuCI	GTSAC	2 cut(s)	1165, 1244
NsbI	TGCGCA	1 cut(s)	1609
NsiI	ATGCAT	1 cut(s)	2188
NspI	RCATGY	1 cut(s)	1001
OliI	CACNNNNGTG	1 cut(s)	1806
PciI	ACATGT	1 cut(s)	997
PciSI	GCTCTTC	1 cut(s)	1772
PctI	GAATGC	1 cut(s)	718
PdiI	GCCGGC	1 cut(s)	511
PdmI	GAANNNNTTC	2 cut(s)	1285, 2000
PfeI	GAWTC	4 cut(s)	134, 490, 1673, 1979
Pfl23II	CGTACG	1 cut(s)	336
PflMI	CCANNNNNTGG	2 cut(s)	818, 1214
PleI	GAGTC	3 cut(s)	942, 1042, 1172
PpsI	GAGTC	3 cut(s)	942, 1042, 1172
PscI	ACATGT	1 cut(s)	997
Psp6I	CCWGG	3 cut(s)	29, 43, 1207
PspFI	CCCAGC	2 cut(s)	689, 698
PspGI	CCWGG	3 cut(s)	29, 43, 1207
PspLI	CGTACG	1 cut(s)	336
PspN4I	GGNNCC	8 cut(s)	6, 35, 49, 204, 412, 508, 901, 1596
PspPI	GGNCC	6 cut(s)	4, 33, 180, 202, 416, 507
PsuI	RGATCY	2 cut(s)	155, 1594
RsaI	GTAC	4 cut(s)	49, 338, 2127, 2311
RsaNI	GTAC	4 cut(s)	48, 337, 2126, 2310
RseI	CAYNNNNRTG	4 cut(s)	762, 1722, 1806, 2194
Rsr2I	CGGWCCG	1 cut(s)	416
RsrII	CGGWCCG	1 cut(s)	416
SapI	GCTCTTC	1 cut(s)	1772
Sau3AI	GATC	9 cut(s)	155, 166, 396, 496, 1177, 1594, 1726, 1798, 2083
Sau96I	GGNCC	6 cut(s)	4, 33, 180, 202, 416, 507
SchI	GAGTC	3 cut(s)	943, 1043, 1173
ScrFI	CCNGG	6 cut(s)	31, 45, 420, 754, 1209, 2239
SduI	GDGCHC	1 cut(s)	1276
SfaNI	GCATC	6 cut(s)	766, 1123, 1327, 1777, 2000, 2195
SfcI	CTRYAG	3 cut(s)	639, 918, 1377
SinI	GGWCC	2 cut(s)	4, 416
SmiMI	CAYNNNNRTG	4 cut(s)	762, 1722, 1806, 2194
SmlI	CTYRAG	3 cut(s)	1466, 1635, 2031
SmoI	CTYRAG	3 cut(s)	1466, 1635, 2031
SspMI	CTAG	5 cut(s)	1250, 1362, 1577, 1614, 1826
StyD4I	CCNGG	6 cut(s)	29, 43, 418, 752, 1207, 2237
StyI	CCWWGG	2 cut(s)	1029, 1290
TaaI	ACNGT	3 cut(s)	347, 371, 1665
TaiI	ACGT	1 cut(s)	363
TaqI	TCGA	6 cut(s)	399, 863, 1131, 1162, 1994, 2014
TatI	WGTACW	1 cut(s)	2309
TauI	GCSGC	7 cut(s)	292, 295, 331, 334, 718, 964, 970
TfiI	GAWTC	4 cut(s)	134, 490, 1673, 1979
TscAI	CASTG	4 cut(s)	823, 1670, 1958, 2254
TseFI	GTSAC	2 cut(s)	1165, 1244
TseI	GCWGC	9 cut(s)	712, 823, 944, 964, 1153, 1605, 1610, 1917, 1920
Tsp45I	GTSAC	2 cut(s)	1165, 1244
TspGWI	ACGGA	1 cut(s)	159
TspRI	CASTG	4 cut(s)	823, 1670, 1958, 2254
Van91I	CCANNNNNTGG	2 cut(s)	818, 1214
VpaK11BI	GGWCC	2 cut(s)	4, 416
XapI	RAATTY	7 cut(s)	457, 622, 634, 1281, 2065, 2170, 2217
XbaI	TCTAGA	1 cut(s)	1361
XceI	RCATGY	1 cut(s)	1001
XmiI	GTMKAC	3 cut(s)	173, 917, 2234
XmnI	GAANNNNTTC	2 cut(s)	1285, 2000
XspI	CTAG	5 cut(s)	1250, 1362, 1577, 1614, 1826
Zsp2I	ATGCAT	1 cut(s)	2188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.