Rroxscaffold_3G00273750

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
65435844 .. 65438067
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00273750.1

Sequence Viewer

Length: 234 bp
ATGGTCCTCTTCTTCTTCACCCTTGTCTTCTTCACCCTTGATCTTCAATACATACATTCTGCTCTGACAAACCTGACCGGTTCAATGTCGACAGTCATCGGAATTTGGGACTCATGTCCAACCAGAACTTGCGGCAGAACGGTTGATGGTGACGATGTGGTAATCAACTGTACCACATTGGATTTTGATGATGACGATGTAGTAATCAACTATATTCGGAACATAACAGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

77

Amino Acids

8.68

Weight (kDa)

4.05

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0032044)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_3G00273750
rosa_samantha Rh1AG404500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 89
AciI CCGC 1 cut(s) 132
AcsI RAATTY 1 cut(s) 102
AfaI GTAC 1 cut(s) 172
AgeI ACCGGT 1 cut(s) 77
AgsI TTSAA 2 cut(s) 47, 84
ApoI RAATTY 1 cut(s) 102
AsiGI ACCGGT 1 cut(s) 77
AspS9I GGNCC 1 cut(s) 4
AsuHPI GGTGA 3 cut(s) 10, 25, 161
AvaII GGWCC 1 cut(s) 4
BbsI GAAGAC 1 cut(s) 19
BccI CCATC 1 cut(s) 140
BisI GCNGC 1 cut(s) 133
BlsI GCNGC 1 cut(s) 134
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BoxI GACNNNNGTC 1 cut(s) 114
BpiI GAAGAC 1 cut(s) 19
BsaWI WCCGGW 1 cut(s) 77
Bse118I RCCGGY 1 cut(s) 77
BshTI ACCGGT 1 cut(s) 77
BsiSI CCGG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 122
BsmFI GGGAC 1 cut(s) 122
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 77
BssAI RCCGGY 1 cut(s) 77
BssMI GATC 1 cut(s) 40
Bst4CI ACNGT 3 cut(s) 94, 142, 170
Bst6I CTCTTC 1 cut(s) 14
BstKTI GATC 1 cut(s) 43
BstMBI GATC 1 cut(s) 40
BstPAI GACNNNNGTC 1 cut(s) 114
BstV2I GAAGAC 1 cut(s) 19
Cfr10I RCCGGY 1 cut(s) 77
Cfr13I GGNCC 1 cut(s) 4
Csp6I GTAC 1 cut(s) 171
CspAI ACCGGT 1 cut(s) 77
CviAII CATG 1 cut(s) 114
CviQI GTAC 1 cut(s) 171
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eam1104I CTCTTC 1 cut(s) 14
EarI CTCTTC 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 4
FaeI CATG 1 cut(s) 117
FaiI YATR 4 cut(s) 53, 115, 213, 224
FaqI GGGAC 1 cut(s) 122
FatI CATG 1 cut(s) 113
FblI GTMKAC 1 cut(s) 89
Fnu4HI GCNGC 1 cut(s) 133
Fsp4HI GCNGC 1 cut(s) 133
GluI GCNGC 1 cut(s) 133
HapII CCGG 1 cut(s) 78
Hin1II CATG 1 cut(s) 117
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 1 cut(s) 110
HpaII CCGG 1 cut(s) 78
HphI GGTGA 3 cut(s) 10, 25, 161
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 3 cut(s) 66, 101, 219
Hpy8I GTNNAC 1 cut(s) 90
HpyCH4III ACNGT 3 cut(s) 94, 142, 170
Hsp92II CATG 1 cut(s) 117
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 3 cut(s) 86, 91, 136
MaeIII GTNAC 1 cut(s) 149
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 5 cut(s) 4, 7, 19, 22, 35
MluCI AATT 1 cut(s) 102
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 1 cut(s) 143
MnlI CCTC 1 cut(s) 17
MspI CCGG 1 cut(s) 78
NdeII GATC 1 cut(s) 40
NlaIII CATG 1 cut(s) 117
NmuCI GTSAC 1 cut(s) 149
PinAI ACCGGT 1 cut(s) 77
PkrI GCNGC 1 cut(s) 134
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
PshAI GACNNNNGTC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 4
RsaI GTAC 1 cut(s) 172
RsaNI GTAC 1 cut(s) 171
SalI GTCGAC 1 cut(s) 88
SatI GCNGC 1 cut(s) 133
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 1 cut(s) 104
SetI ASST 1 cut(s) 75
SgeI CNNG 7 cut(s) 35, 50, 85, 90, 126, 135, 141
SinI GGWCC 1 cut(s) 4
Sse9I AATT 1 cut(s) 102
SsiI CCGC 1 cut(s) 132
TaaI ACNGT 3 cut(s) 94, 142, 170
TaqI TCGA 1 cut(s) 89
TasI AATT 1 cut(s) 102
TauI GCSGC 1 cut(s) 135
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 102
XmiI GTMKAC 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.