host programmed cell death induced by symbiont
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| rosa_roxburghii | Rroxscaffold_3G00273750 |
| rosa_samantha | Rh1AG404500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 5 |
| AciI | CCGC | 1 cut(s) | 48 |
| AcsI | RAATTY | 1 cut(s) | 180 |
| AfaI | GTAC | 1 cut(s) | 88 |
| AoxI | GGCC | 1 cut(s) | 103 |
| ApoI | RAATTY | 1 cut(s) | 180 |
| BccI | CCATC | 2 cut(s) | 56, 136 |
| BclI | TGATCA | 1 cut(s) | 78 |
| BisI | GCNGC | 1 cut(s) | 49 |
| BlsI | GCNGC | 1 cut(s) | 50 |
| BmsI | GCATC | 1 cut(s) | 61 |
| BoxI | GACNNNNGTC | 1 cut(s) | 30 |
| BsaWI | WCCGGW | 1 cut(s) | 38 |
| BshFI | GGCC | 1 cut(s) | 105 |
| BsiSI | CCGG | 1 cut(s) | 39 |
| BslFI | GGGAC | 1 cut(s) | 38 |
| BsmFI | GGGAC | 1 cut(s) | 38 |
| BsnI | GGCC | 1 cut(s) | 105 |
| Bsp143I | GATC | 1 cut(s) | 78 |
| BspACI | CCGC | 1 cut(s) | 48 |
| BspANI | GGCC | 1 cut(s) | 105 |
| BssMI | GATC | 1 cut(s) | 78 |
| Bst4CI | ACNGT | 3 cut(s) | 10, 58, 86 |
| BstKTI | GATC | 1 cut(s) | 81 |
| BstMBI | GATC | 1 cut(s) | 78 |
| BstNSI | RCATGY | 1 cut(s) | 169 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 30 |
| BsuRI | GGCC | 1 cut(s) | 105 |
| BtgZI | GCGATG | 1 cut(s) | 84 |
| BtsI | GCAGTG | 1 cut(s) | 81 |
| BtsIMutI | CAGTG | 1 cut(s) | 81 |
| Csp6I | GTAC | 1 cut(s) | 87 |
| CviAII | CATG | 2 cut(s) | 30, 166 |
| CviJI | RGCY | 1 cut(s) | 105 |
| CviKI_1 | RGCY | 1 cut(s) | 105 |
| CviQI | GTAC | 1 cut(s) | 87 |
| DpnI | GATC | 1 cut(s) | 80 |
| DpnII | GATC | 1 cut(s) | 78 |
| FaeI | CATG | 2 cut(s) | 33, 169 |
| FaiI | YATR | 3 cut(s) | 31, 114, 167 |
| FaqI | GGGAC | 1 cut(s) | 38 |
| FatI | CATG | 2 cut(s) | 29, 165 |
| FbaI | TGATCA | 1 cut(s) | 78 |
| FblI | GTMKAC | 1 cut(s) | 5 |
| Fnu4HI | GCNGC | 1 cut(s) | 49 |
| Fsp4HI | GCNGC | 1 cut(s) | 49 |
| GluI | GCNGC | 1 cut(s) | 49 |
| HaeIII | GGCC | 1 cut(s) | 105 |
| HapII | CCGG | 1 cut(s) | 39 |
| Hin1II | CATG | 2 cut(s) | 33, 169 |
| HincII | GTYRAC | 1 cut(s) | 6 |
| HindII | GTYRAC | 1 cut(s) | 6 |
| HinfI | GANTC | 4 cut(s) | 18, 26, 148, 201 |
| HpaII | CCGG | 1 cut(s) | 39 |
| Hpy166II | GTNNAC | 1 cut(s) | 6 |
| Hpy188I | TCNGA | 1 cut(s) | 17 |
| Hpy8I | GTNNAC | 1 cut(s) | 6 |
| Hpy99I | CGWCG | 1 cut(s) | 10 |
| HpyAV | CCTTC | 1 cut(s) | 191 |
| HpyCH4III | ACNGT | 3 cut(s) | 10, 58, 86 |
| HpyCH4V | TGCA | 1 cut(s) | 74 |
| Hsp92II | CATG | 2 cut(s) | 33, 169 |
| Ksp22I | TGATCA | 1 cut(s) | 78 |
| Kzo9I | GATC | 1 cut(s) | 78 |
| LpnPI | CCDG | 2 cut(s) | 7, 52 |
| LweI | GCATC | 1 cut(s) | 61 |
| MalI | GATC | 1 cut(s) | 80 |
| MboI | GATC | 1 cut(s) | 78 |
| MluCI | AATT | 1 cut(s) | 180 |
| MlyI | GAGTC | 1 cut(s) | 20 |
| MmeI | TCCRAC | 1 cut(s) | 59 |
| MseI | TTAA | 1 cut(s) | 209 |
| MspI | CCGG | 1 cut(s) | 39 |
| NdeII | GATC | 1 cut(s) | 78 |
| NlaIII | CATG | 2 cut(s) | 33, 169 |
| NspI | RCATGY | 1 cut(s) | 169 |
| PfeI | GAWTC | 3 cut(s) | 18, 148, 201 |
| PkrI | GCNGC | 1 cut(s) | 50 |
| PleI | GAGTC | 1 cut(s) | 20 |
| PpsI | GAGTC | 1 cut(s) | 20 |
| PshAI | GACNNNNGTC | 1 cut(s) | 30 |
| RsaI | GTAC | 1 cut(s) | 88 |
| RsaNI | GTAC | 1 cut(s) | 87 |
| SalI | GTCGAC | 1 cut(s) | 4 |
| SaqAI | TTAA | 1 cut(s) | 209 |
| SatI | GCNGC | 1 cut(s) | 49 |
| Sau3AI | GATC | 1 cut(s) | 78 |
| SchI | GAGTC | 1 cut(s) | 20 |
| SfaNI | GCATC | 1 cut(s) | 61 |
| SgeI | CNNG | 9 cut(s) | 34, 42, 51, 57, 164, 173, 178, 182, 197 |
| Sse9I | AATT | 1 cut(s) | 180 |
| SsiI | CCGC | 1 cut(s) | 48 |
| TaaI | ACNGT | 3 cut(s) | 10, 58, 86 |
| TaqI | TCGA | 2 cut(s) | 5, 184 |
| TaqII | GACCGA | 1 cut(s) | 108 |
| TasI | AATT | 1 cut(s) | 180 |
| TauI | GCSGC | 1 cut(s) | 51 |
| TfiI | GAWTC | 3 cut(s) | 18, 148, 201 |
| Tru1I | TTAA | 1 cut(s) | 209 |
| Tru9I | TTAA | 1 cut(s) | 209 |
| TscAI | CASTG | 1 cut(s) | 81 |
| TspRI | CASTG | 1 cut(s) | 81 |
| XapI | RAATTY | 1 cut(s) | 180 |
| XceI | RCATGY | 1 cut(s) | 169 |
| XmiI | GTMKAC | 1 cut(s) | 5 |