Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0025822

Physical Location & Seq

Genomic Coordinates Reverse (-)

9979978 .. 10004117

Gene Structure 24140 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00289360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGTCCCCCGACCTAAAGAGCTTCTACTTTAGCGAACTGGAAAGAGCAACTAGGAATTTTCATCCTGATAATAAGGTGGATGAAGGTGGTTTTGGTTGTCTCTTCAAGGGTTGGATTGAAAAGAATTCATTAACAGCTGCCAAGCCTGGTTCTGGCATAGTCATTGCTGTGAAGAGGATTCGGCAAGAGAGTTCCGAAGGTCAAATGGACTGGTCGAATTACAATGTCAAACTATGTGGTTATGGTTTTTCCAAGGAAAGGCTGGGCCGTTGCAGACACCAGGTTATACTTCCTTGGTATGAGGACAGGGTAGGAGTGTCTGGGAATTTGTATGCATGTACTGCTGAGAATGCATATGCAGCTCCTGAGTGTAAAGATCAGTTGACCCCTGAAAGTGATGTCTATAGTTTTGGGATTGTTCTGCTGGAACTGTTATCTGGCAGACGAGCTTTTGACTTTACAAGGCCGCGAGGAGAAAAAGATTTAGTTCAGTTGGTCAAGGAATTTTCTGGCAAGTCAATCAGCAAATACGAAGTTGACCAAGTTTTTGATGCTCATATTGAAGGCCAGTACCCTGAGCAAAGCATTGGCCCTGTACTTCTATGCCTGCAAGTAGCCGAGTTCAGGCCAAGCATGAGTATGGTGATAAATGTGTTGAAGCCGTTGCATGCCAATTCAGGAGAAGGTCTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

231

Amino Acids

25.93

Weight (kDa)

6.13

Isoelectric Point (pI)

44.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0025822)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_4G00289360
rosa_wichuraiana	Rw1G030450 Rw1G030500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	469
AciI	CCGC	1 cut(s)	467
AcsI	RAATTY	4 cut(s)	55, 124, 325, 503
AfaI	GTAC	3 cut(s)	340, 572, 597
AfiI	CCNNNNNNNGG	3 cut(s)	152, 258, 624
AgsI	TTSAA	4 cut(s)	106, 119, 563, 658
AjnI	CCWGG	2 cut(s)	145, 279
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	4 cut(s)	21, 137, 362, 449
AluI	AGCT	4 cut(s)	21, 137, 362, 449
Alw26I	GTCTC	2 cut(s)	104, 692
AlwNI	CAGNNNCTG	1 cut(s)	365
AoxI	GGCC	5 cut(s)	265, 464, 565, 589, 626
ApeKI	GCWGC	2 cut(s)	137, 359
ApoI	RAATTY	4 cut(s)	55, 124, 325, 503
ArsI	GACNNNNNNTTYG	2 cut(s)	530, 562
AspS9I	GGNCC	2 cut(s)	265, 590
AsuHPI	GGTGA	1 cut(s)	655
BbvI	GCAGC	2 cut(s)	124, 371
BceAI	ACGGC	2 cut(s)	252, 646
BciT130I	CCWGG	2 cut(s)	147, 281
BcoDI	GTCTC	2 cut(s)	104, 692
BfaI	CTAG	1 cut(s)	51
BfmI	CTRYAG	1 cut(s)	403
BisI	GCNGC	3 cut(s)	138, 360, 467
BlsI	GCNGC	3 cut(s)	139, 361, 468
Bme1390I	CCNGG	2 cut(s)	147, 281
BmgT120I	GGNCC	2 cut(s)	265, 590
BmrFI	CCNGG	2 cut(s)	147, 281
BmsI	GCATC	1 cut(s)	541
BplI	GAGNNNNNCTC	1 cut(s)	672
Bpu10I	CCTNAGC	1 cut(s)	576
BsaI	GGTCTC	1 cut(s)	692
BsaJI	CCNNGG	2 cut(s)	252, 293
Bsc4I	CCNNNNNNNGG	3 cut(s)	152, 258, 624
Bse1I	ACTGG	3 cut(s)	42, 215, 568
Bse3DI	GCAATG	1 cut(s)	162
BseBI	CCWGG	2 cut(s)	147, 281
BseDI	CCNNGG	2 cut(s)	252, 293
BseGI	GGATG	2 cut(s)	61, 85
BseLI	CCNNNNNNNGG	3 cut(s)	152, 258, 624
BseMI	GCAATG	1 cut(s)	162
BseMII	CTCAG	3 cut(s)	336, 357, 567
BseNI	ACTGG	3 cut(s)	42, 215, 568
BseRI	GAGGAG	1 cut(s)	486
BseXI	GCAGC	2 cut(s)	124, 371
BseYI	CCCAGC	1 cut(s)	262
Bsh1236I	CGCG	1 cut(s)	469
BshFI	GGCC	5 cut(s)	267, 466, 567, 591, 628
BslI	CCNNNNNNNGG	3 cut(s)	152, 258, 624
BsmAI	GTCTC	2 cut(s)	104, 692
BsmI	GAATGC	1 cut(s)	355
BsnI	GGCC	5 cut(s)	267, 466, 567, 591, 628
Bso31I	GGTCTC	1 cut(s)	692
Bsp143I	GATC	1 cut(s)	376
BspACI	CCGC	1 cut(s)	467
BspANI	GGCC	5 cut(s)	267, 466, 567, 591, 628
BspCNI	CTCAG	3 cut(s)	337, 358, 568
BspFNI	CGCG	1 cut(s)	469
BspTNI	GGTCTC	1 cut(s)	692
BsrDI	GCAATG	1 cut(s)	162
BsrI	ACTGG	3 cut(s)	42, 215, 568
BssECI	CCNNGG	2 cut(s)	252, 293
BssMI	GATC	1 cut(s)	376
BssT1I	CCWWGG	2 cut(s)	252, 293
Bst2UI	CCWGG	2 cut(s)	147, 281
Bst4CI	ACNGT	1 cut(s)	432
Bst6I	CTCTTC	2 cut(s)	107, 167
BstAPI	GCANNNNNTGC	1 cut(s)	341
BstC8I	GCNNGC	2 cut(s)	608, 669
BstDEI	CTNAG	3 cut(s)	345, 366, 576
BstF5I	GGATG	2 cut(s)	61, 85
BstFNI	CGCG	1 cut(s)	469
BstKTI	GATC	1 cut(s)	379
BstMAI	GTCTC	2 cut(s)	104, 692
BstMBI	GATC	1 cut(s)	376
BstMWI	GCNNNNNNNGC	3 cut(s)	341, 350, 359
BstNI	CCWGG	2 cut(s)	147, 281
BstNSI	RCATGY	2 cut(s)	339, 671
BstSCI	CCNGG	2 cut(s)	145, 279
BstSFI	CTRYAG	1 cut(s)	403
BstUI	CGCG	1 cut(s)	469
BstV1I	GCAGC	2 cut(s)	124, 371
BsuRI	GGCC	5 cut(s)	267, 466, 567, 591, 628
BtsCI	GGATG	2 cut(s)	61, 85
Cac8I	GCNNGC	2 cut(s)	608, 669
CaiI	CAGNNNCTG	1 cut(s)	365
Cfr13I	GGNCC	2 cut(s)	265, 590
CsiI	ACCWGGT	1 cut(s)	279
Csp6I	GTAC	3 cut(s)	339, 571, 596
CspCI	CAANNNNNGTGG	2 cut(s)	217, 252
CviAII	CATG	3 cut(s)	336, 634, 668
CviQI	GTAC	3 cut(s)	339, 571, 596
DdeI	CTNAG	3 cut(s)	345, 366, 576
DpnI	GATC	1 cut(s)	378
DpnII	GATC	1 cut(s)	376
Eam1104I	CTCTTC	2 cut(s)	107, 167
EarI	CTCTTC	2 cut(s)	107, 167
Eco130I	CCWWGG	2 cut(s)	252, 293
Eco31I	GGTCTC	1 cut(s)	692
EcoRI	GAATTC	1 cut(s)	124
EcoRII	CCWGG	2 cut(s)	145, 279
EcoT14I	CCWWGG	2 cut(s)	252, 293
EcoT22I	ATGCAT	2 cut(s)	337, 355
ErhI	CCWWGG	2 cut(s)	252, 293
FaeI	CATG	3 cut(s)	339, 637, 671
FatI	CATG	3 cut(s)	335, 633, 667
FauNDI	CATATG	1 cut(s)	355
Fnu4HI	GCNGC	3 cut(s)	138, 360, 467
FokI	GGATG	2 cut(s)	48, 92
Fsp4HI	GCNGC	3 cut(s)	138, 360, 467
FspBI	CTAG	1 cut(s)	51
GluI	GCNGC	3 cut(s)	138, 360, 467
GsaI	CCCAGC	1 cut(s)	266
HaeIII	GGCC	5 cut(s)	267, 466, 567, 591, 628
Hin1II	CATG	3 cut(s)	339, 637, 671
HincII	GTYRAC	2 cut(s)	384, 538
HindII	GTYRAC	2 cut(s)	384, 538
HinfI	GANTC	1 cut(s)	178
HphI	GGTGA	1 cut(s)	655
Hpy166II	GTNNAC	2 cut(s)	384, 538
Hpy188I	TCNGA	1 cut(s)	196
Hpy188III	TCNNGA	3 cut(s)	65, 365, 678
Hpy8I	GTNNAC	2 cut(s)	384, 538
HpyAV	CCTTC	4 cut(s)	77, 191, 557, 677
HpyCH4III	ACNGT	1 cut(s)	432
HpyCH4V	TGCA	6 cut(s)	273, 335, 353, 359, 610, 667
HpyF10VI	GCNNNNNNNGC	3 cut(s)	341, 350, 359
HpyF3I	CTNAG	3 cut(s)	345, 366, 576
Hsp92II	CATG	3 cut(s)	339, 637, 671
Kzo9I	GATC	1 cut(s)	376
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	2 cut(s)	124, 371
LweI	GCATC	1 cut(s)	541
MabI	ACCWGGT	1 cut(s)	279
MaeI	CTAG	1 cut(s)	51
MalI	GATC	1 cut(s)	378
MboI	GATC	1 cut(s)	376
MboII	GAAGA	2 cut(s)	94, 184
MluCI	AATT	6 cut(s)	55, 124, 217, 325, 503, 673
MmeI	TCCRAC	1 cut(s)	92
MnlI	CCTC	3 cut(s)	168, 295, 464
Mph1103I	ATGCAT	2 cut(s)	337, 355
MseI	TTAA	1 cut(s)	131
MslI	CAYNNNNRTG	2 cut(s)	167, 638
MspA1I	CMGCKG	1 cut(s)	137
MspR9I	CCNGG	2 cut(s)	147, 281
Mva1269I	GAATGC	1 cut(s)	355
MvaI	CCWGG	2 cut(s)	147, 281
MvnI	CGCG	1 cut(s)	469
MwoI	GCNNNNNNNGC	3 cut(s)	341, 350, 359
NdeI	CATATG	1 cut(s)	355
NdeII	GATC	1 cut(s)	376
NlaIII	CATG	3 cut(s)	339, 637, 671
NmeAIII	GCCGAG	1 cut(s)	643
NsiI	ATGCAT	2 cut(s)	337, 355
NspI	RCATGY	2 cut(s)	339, 671
PaeI	GCATGC	1 cut(s)	671
PctI	GAATGC	1 cut(s)	355
PfeI	GAWTC	1 cut(s)	178
PkrI	GCNGC	3 cut(s)	139, 361, 468
Psp6I	CCWGG	2 cut(s)	145, 279
PspFI	CCCAGC	1 cut(s)	262
PspGI	CCWGG	2 cut(s)	145, 279
PspPI	GGNCC	2 cut(s)	265, 590
PstNI	CAGNNNCTG	1 cut(s)	365
PvuII	CAGCTG	1 cut(s)	137
RsaI	GTAC	3 cut(s)	340, 572, 597
RsaNI	GTAC	3 cut(s)	339, 571, 596
RseI	CAYNNNNRTG	2 cut(s)	167, 638
SaqAI	TTAA	1 cut(s)	131
SatI	GCNGC	3 cut(s)	138, 360, 467
Sau3AI	GATC	1 cut(s)	376
Sau96I	GGNCC	2 cut(s)	265, 590
ScrFI	CCNGG	2 cut(s)	147, 281
SexAI	ACCWGGT	1 cut(s)	279
SfaNI	GCATC	1 cut(s)	541
SfcI	CTRYAG	1 cut(s)	403
SmiMI	CAYNNNNRTG	2 cut(s)	167, 638
SphI	GCATGC	1 cut(s)	671
Sse9I	AATT	6 cut(s)	55, 124, 217, 325, 503, 673
SsiI	CCGC	1 cut(s)	467
SspMI	CTAG	1 cut(s)	51
StyD4I	CCNGG	2 cut(s)	145, 279
StyI	CCWWGG	2 cut(s)	252, 293
TaaI	ACNGT	1 cut(s)	432
TaqI	TCGA	1 cut(s)	215
TasI	AATT	6 cut(s)	55, 124, 217, 325, 503, 673
TatI	WGTACW	2 cut(s)	338, 595
TauI	GCSGC	1 cut(s)	469
TfiI	GAWTC	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	131
Tru9I	TTAA	1 cut(s)	131
TseI	GCWGC	2 cut(s)	137, 359
TspDTI	ATGAA	3 cut(s)	50, 96, 117
XapI	RAATTY	4 cut(s)	55, 124, 325, 503
XceI	RCATGY	2 cut(s)	339, 671
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XspI	CTAG	1 cut(s)	51
Zsp2I	ATGCAT	2 cut(s)	337, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.