Rroxscaffold_4G00298850

L-type lectin-domain containing receptor kinase IX.1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0032065
Physical Location & Seq
Reverse (-)
18703739 .. 18709158
5420 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00298850.1

Sequence Viewer

Length: 447 bp
ATGATTGATATTATCTCTCACGGCATGATCTTATCTCGCTTGGCATCATCACCTCGACATGATCTCGCTGGGCATGCTCTTACTCTCGGTCACCTCGACATCTTATCTCAGTGGGCATCAACTTATCTCGCTCAATATGAGTGTGCCAACACACGGCCGAAGGCCAAGTGTGCAATTGTAGATGTAGTAGATATAGTGCGCGTGTTCGACTTCATCGAACGACTAAAAGCCGAGGAAGGAACAATCTCGGTGAGGGTTCGATGCCTTGGAAACAAGGACTTTTGGGTTGTTCAATGGATGAGGCGAATGATGATTGAGAACATACTCTATGGAGGCGATGCCAGGCCTTACTTAGGAACTGTTGAACTCACCCCACGCTCGAAATCGTTCCCCGCAGGACGGTGTACTTATTCGCAACCTTATCACTTAAGGGACTCTACTACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lectin_legB Pkinase

Protein Analysis

148

Amino Acids

16.8

Weight (kDa)

8.75

Isoelectric Point (pI)

49.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0032065)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_4G00298850 Rroxscaffold_6G00422320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 201
AciI CCGC 1 cut(s) 393
AcoI YGGCCR 1 cut(s) 155
AfaI GTAC 1 cut(s) 406
AfiI CCNNNNNNNGG 3 cut(s) 153, 353, 399
AflII CTTAAG 1 cut(s) 427
AgsI TTSAA 2 cut(s) 293, 365
AjnI CCWGG 1 cut(s) 341
AoxI GGCC 3 cut(s) 155, 162, 344
Asp700I GAANNNNTTC 1 cut(s) 386
AspLEI GCGC 1 cut(s) 201
AsuHPI GGTGA 4 cut(s) 42, 83, 262, 361
BceAI ACGGC 2 cut(s) 37, 170
BciT130I CCWGG 1 cut(s) 343
BfrI CTTAAG 1 cut(s) 427
Bme1390I CCNGG 1 cut(s) 343
BmrFI CCNGG 1 cut(s) 343
BmsI GCATC 4 cut(s) 53, 125, 251, 328
BsaJI CCNNGG 2 cut(s) 231, 265
Bsc4I CCNNNNNNNGG 3 cut(s) 153, 353, 399
BseBI CCWGG 1 cut(s) 343
BseDI CCNNGG 2 cut(s) 231, 265
BseGI GGATG 1 cut(s) 303
BseLI CCNNNNNNNGG 3 cut(s) 153, 353, 399
BseMII CTCAG 1 cut(s) 122
BseX3I CGGCCG 1 cut(s) 155
BseYI CCCAGC 1 cut(s) 68
Bsh1236I CGCG 1 cut(s) 201
Bsh1285I CGRYCG 1 cut(s) 158
BshFI GGCC 3 cut(s) 157, 164, 346
BsiEI CGRYCG 1 cut(s) 158
BslI CCNNNNNNNGG 3 cut(s) 153, 353, 399
BsnI GGCC 3 cut(s) 157, 164, 346
Bsp143I GATC 2 cut(s) 27, 61
BspACI CCGC 1 cut(s) 393
BspANI GGCC 3 cut(s) 157, 164, 346
BspCNI CTCAG 1 cut(s) 121
BspFNI CGCG 1 cut(s) 201
BspTI CTTAAG 1 cut(s) 427
BssECI CCNNGG 2 cut(s) 231, 265
BssMI GATC 2 cut(s) 27, 61
BssT1I CCWWGG 1 cut(s) 265
Bst2UI CCWGG 1 cut(s) 343
Bst4CI ACNGT 2 cut(s) 361, 402
BstAFI CTTAAG 1 cut(s) 427
BstC8I GCNNGC 1 cut(s) 75
BstDEI CTNAG 3 cut(s) 108, 352, 444
BstEII GGTNACC 1 cut(s) 89
BstENI CCTNNNNNAGG 1 cut(s) 351
BstF5I GGATG 1 cut(s) 303
BstFNI CGCG 1 cut(s) 201
BstHHI GCGC 1 cut(s) 201
BstKTI GATC 2 cut(s) 30, 64
BstMBI GATC 2 cut(s) 27, 61
BstMCI CGRYCG 1 cut(s) 158
BstMWI GCNNNNNNNGC 2 cut(s) 74, 170
BstNI CCWGG 1 cut(s) 343
BstNSI RCATGY 1 cut(s) 77
BstPI GGTNACC 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 341
BstUI CGCG 1 cut(s) 201
BstZI CGGCCG 1 cut(s) 155
BsuRI GGCC 3 cut(s) 157, 164, 346
BtgZI GCGATG 1 cut(s) 351
BtsCI GGATG 1 cut(s) 303
BtsIMutI CAGTG 1 cut(s) 116
Cac8I GCNNGC 1 cut(s) 75
CfoI GCGC 1 cut(s) 201
Csp6I GTAC 1 cut(s) 405
CviAII CATG 3 cut(s) 25, 59, 74
CviJI RGCY 4 cut(s) 157, 164, 230, 346
CviKI_1 RGCY 4 cut(s) 157, 164, 230, 346
CviQI GTAC 1 cut(s) 405
DdeI CTNAG 3 cut(s) 108, 352, 444
DpnI GATC 2 cut(s) 29, 63
DpnII GATC 2 cut(s) 27, 61
EaeI YGGCCR 1 cut(s) 155
EagI CGGCCG 1 cut(s) 155
EclXI CGGCCG 1 cut(s) 155
Eco130I CCWWGG 1 cut(s) 265
Eco147I AGGCCT 1 cut(s) 346
Eco52I CGGCCG 1 cut(s) 155
Eco91I GGTNACC 1 cut(s) 89
EcoNI CCTNNNNNAGG 1 cut(s) 351
EcoO65I GGTNACC 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 341
EcoT14I CCWWGG 1 cut(s) 265
ErhI CCWWGG 1 cut(s) 265
FaeI CATG 3 cut(s) 28, 62, 77
FaiI YATR 7 cut(s) 26, 60, 75, 138, 194, 323, 330
FatI CATG 3 cut(s) 24, 58, 73
FauI CCCGC 1 cut(s) 400
FokI GGATG 1 cut(s) 310
GlaI GCGC 1 cut(s) 200
GsaI CCCAGC 1 cut(s) 72
HaeIII GGCC 3 cut(s) 157, 164, 346
HhaI GCGC 1 cut(s) 201
Hin1II CATG 3 cut(s) 28, 62, 77
Hin6I GCGC 1 cut(s) 199
HinP1I GCGC 1 cut(s) 199
HinfI GANTC 1 cut(s) 434
HphI GGTGA 4 cut(s) 42, 83, 262, 361
Hpy166II GTNNAC 1 cut(s) 405
Hpy8I GTNNAC 1 cut(s) 405
HpyAV CCTTC 2 cut(s) 154, 230
HpyCH4III ACNGT 2 cut(s) 361, 402
HpyCH4V TGCA 1 cut(s) 173
HpyF10VI GCNNNNNNNGC 2 cut(s) 74, 170
HpyF3I CTNAG 3 cut(s) 108, 352, 444
Hsp92II CATG 3 cut(s) 28, 62, 77
HspAI GCGC 1 cut(s) 199
Kzo9I GATC 2 cut(s) 27, 61
LpnPI CCDG 4 cut(s) 54, 328, 355, 381
LweI GCATC 4 cut(s) 53, 125, 251, 328
MaeIII GTNAC 1 cut(s) 89
MalI GATC 2 cut(s) 29, 63
MboI GATC 2 cut(s) 27, 61
MfeI CAATTG 1 cut(s) 174
MluCI AATT 1 cut(s) 174
MlyI GAGTC 1 cut(s) 428
MnlI CCTC 6 cut(s) 63, 104, 226, 246, 294, 326
MroXI GAANNNNTTC 1 cut(s) 386
MseI TTAA 1 cut(s) 428
MspCI CTTAAG 1 cut(s) 427
MspR9I CCNGG 1 cut(s) 343
MunI CAATTG 1 cut(s) 174
MvaI CCWGG 1 cut(s) 343
MvnI CGCG 1 cut(s) 201
MwoI GCNNNNNNNGC 2 cut(s) 74, 170
NdeII GATC 2 cut(s) 27, 61
NlaIII CATG 3 cut(s) 28, 62, 77
NmeAIII GCCGAG 1 cut(s) 256
NmuCI GTSAC 1 cut(s) 89
NspI RCATGY 1 cut(s) 77
PaeI GCATGC 1 cut(s) 77
PceI AGGCCT 1 cut(s) 346
PcsI WCGNNNNNNNCGW 2 cut(s) 93, 213
PdmI GAANNNNTTC 1 cut(s) 386
PleI GAGTC 1 cut(s) 428
PpsI GAGTC 1 cut(s) 428
Psp6I CCWGG 1 cut(s) 341
PspEI GGTNACC 1 cut(s) 89
PspFI CCCAGC 1 cut(s) 68
PspGI CCWGG 1 cut(s) 341
RsaI GTAC 1 cut(s) 406
RsaNI GTAC 1 cut(s) 405
SaqAI TTAA 1 cut(s) 428
Sau3AI GATC 2 cut(s) 27, 61
SchI GAGTC 1 cut(s) 428
ScrFI CCNGG 1 cut(s) 343
SetI ASST 3 cut(s) 55, 96, 421
SfaNI GCATC 4 cut(s) 53, 125, 251, 328
SmlI CTYRAG 1 cut(s) 427
SmoI CTYRAG 1 cut(s) 427
SphI GCATGC 1 cut(s) 77
Sse9I AATT 1 cut(s) 174
SseBI AGGCCT 1 cut(s) 346
SsiI CCGC 1 cut(s) 393
StuI AGGCCT 1 cut(s) 346
StyD4I CCNGG 1 cut(s) 341
StyI CCWWGG 1 cut(s) 265
TaaI ACNGT 2 cut(s) 361, 402
TaqI TCGA 6 cut(s) 55, 96, 207, 216, 259, 380
TaqII GACCGA 1 cut(s) 77
TasI AATT 1 cut(s) 174
TatI WGTACW 1 cut(s) 404
Tru1I TTAA 1 cut(s) 428
Tru9I TTAA 1 cut(s) 428
TscAI CASTG 1 cut(s) 116
TseFI GTSAC 1 cut(s) 89
Tsp45I GTSAC 1 cut(s) 89
TspDTI ATGAA 1 cut(s) 202
TspRI CASTG 1 cut(s) 116
Vha464I CTTAAG 1 cut(s) 427
XagI CCTNNNNNAGG 1 cut(s) 351
XceI RCATGY 1 cut(s) 77
XmnI GAANNNNTTC 1 cut(s) 386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.