Rroxscaffold_6G00422320

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0032065
Physical Location & Seq
Forward (+)
43256063 .. 43259062
3000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00422320.1

Sequence Viewer

Length: 282 bp
ATGAATGGATTGCGGGAGCGTGCCAGCACACAGCCGAAGGCCAAGTGTGCAATTGTAGATGTAGTAGATGTAGTGCGCGTGTTCGACTTCGTCGAGCGACCGAAAGCCAAGGAAGGAACTATCTCGGTTGAGGATTACCCAATCAGGTTAGGTAGCTACAGGGGCACTTCCGTAAACTCACATGGCCTCACACCTACGTGTCGCGCCCAATTGCCGCAGTCTTCATTTCCGTTAAGGCCCAATCCCGCACCGCCACATCATACCAATGACCGGCTGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

93

Amino Acids

10.28

Weight (kDa)

9.5

Isoelectric Point (pI)

27.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0032065)

Species Orthologous Gene IDs
rosa_roxburghii Rroxscaffold_4G00298850 Rroxscaffold_6G00422320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 78, 204
AciI CCGC 4 cut(s) 13, 215, 246, 251
AfiI CCNNNNNNNGG 1 cut(s) 270
AflIII ACRYGT 1 cut(s) 197
AleI CACNNNNGTG 1 cut(s) 196
AluBI AGCT 2 cut(s) 156, 279
AluI AGCT 2 cut(s) 156, 279
AoxI GGCC 3 cut(s) 39, 184, 236
AspLEI GCGC 2 cut(s) 78, 206
AspS9I GGNCC 1 cut(s) 237
BaeGI GKGCMC 1 cut(s) 167
BbsI GAAGAC 1 cut(s) 213
BfmI CTRYAG 1 cut(s) 157
BisI GCNGC 1 cut(s) 215
BlpI GCTNAGC 1 cut(s) 275
BlsI GCNGC 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 213
Bpu1102I GCTNAGC 1 cut(s) 275
BsaAI YACGTR 1 cut(s) 198
BsaJI CCNNGG 1 cut(s) 108
Bsc4I CCNNNNNNNGG 1 cut(s) 270
Bse118I RCCGGY 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 108
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 266
BseSI GKGCMC 1 cut(s) 167
Bsh1236I CGCG 2 cut(s) 78, 204
Bsh1285I CGRYCG 1 cut(s) 101
BshFI GGCC 3 cut(s) 41, 186, 238
BsiEI CGRYCG 1 cut(s) 101
BsiSI CCGG 1 cut(s) 271
BslI CCNNNNNNNGG 1 cut(s) 270
BsnI GGCC 3 cut(s) 41, 186, 238
Bsp1286I GDGCHC 1 cut(s) 167
Bsp1720I GCTNAGC 1 cut(s) 275
BspACI CCGC 4 cut(s) 13, 215, 246, 251
BspANI GGCC 3 cut(s) 41, 186, 238
BspCNI CTCAG 1 cut(s) 267
BspFNI CGCG 2 cut(s) 78, 204
BsrFI RCCGGY 1 cut(s) 270
BssAI RCCGGY 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 108
BssT1I CCWWGG 1 cut(s) 108
BstBAI YACGTR 1 cut(s) 198
BstC8I GCNNGC 2 cut(s) 21, 25
BstDEI CTNAG 1 cut(s) 275
BstFNI CGCG 2 cut(s) 78, 204
BstHHI GCGC 2 cut(s) 78, 206
BstMCI CGRYCG 1 cut(s) 101
BstMWI GCNNNNNNNGC 2 cut(s) 47, 162
BstSFI CTRYAG 1 cut(s) 157
BstSLI GKGCMC 1 cut(s) 167
BstUI CGCG 2 cut(s) 78, 204
BstV2I GAAGAC 1 cut(s) 213
BsuRI GGCC 3 cut(s) 41, 186, 238
Cac8I GCNNGC 2 cut(s) 21, 25
CfoI GCGC 2 cut(s) 78, 206
Cfr10I RCCGGY 1 cut(s) 270
Cfr13I GGNCC 1 cut(s) 237
CviAII CATG 1 cut(s) 182
CviJI RGCY 8 cut(s) 34, 41, 107, 156, 186, 238, 274, 279
CviKI_1 RGCY 8 cut(s) 34, 41, 107, 156, 186, 238, 274, 279
DdeI CTNAG 1 cut(s) 275
Eco130I CCWWGG 1 cut(s) 108
EcoT14I CCWWGG 1 cut(s) 108
ErhI CCWWGG 1 cut(s) 108
FaeI CATG 1 cut(s) 185
FaiI YATR 2 cut(s) 183, 261
FatI CATG 1 cut(s) 181
FauI CCCGC 2 cut(s) 6, 253
Fnu4HI GCNGC 1 cut(s) 215
Fsp4HI GCNGC 1 cut(s) 215
GlaI GCGC 2 cut(s) 77, 205
GluI GCNGC 1 cut(s) 215
HaeIII GGCC 3 cut(s) 41, 186, 238
HapII CCGG 1 cut(s) 271
HhaI GCGC 2 cut(s) 78, 206
Hin1II CATG 1 cut(s) 185
Hin6I GCGC 2 cut(s) 76, 204
HinP1I GCGC 2 cut(s) 76, 204
HpaII CCGG 1 cut(s) 271
Hpy166II GTNNAC 1 cut(s) 175
Hpy8I GTNNAC 1 cut(s) 175
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 2 cut(s) 31, 107
HpyCH4IV ACGT 1 cut(s) 197
HpyCH4V TGCA 1 cut(s) 50
HpyF10VI GCNNNNNNNGC 2 cut(s) 47, 162
HpyF3I CTNAG 1 cut(s) 275
HpySE526I ACGT 1 cut(s) 197
Hsp92II CATG 1 cut(s) 185
HspAI GCGC 2 cut(s) 76, 204
LmnI GCTCC 1 cut(s) 16
LpnPI CCDG 3 cut(s) 37, 130, 145
MaeII ACGT 1 cut(s) 197
MboII GAAGA 1 cut(s) 213
MfeI CAATTG 2 cut(s) 51, 209
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 2 cut(s) 51, 209
MnlI CCTC 2 cut(s) 124, 197
MseI TTAA 1 cut(s) 233
MslI CAYNNNNRTG 2 cut(s) 196, 264
MspI CCGG 1 cut(s) 271
MunI CAATTG 2 cut(s) 51, 209
MvnI CGCG 2 cut(s) 78, 204
MwoI GCNNNNNNNGC 2 cut(s) 47, 162
NlaIII CATG 1 cut(s) 185
OliI CACNNNNGTG 1 cut(s) 196
PcsI WCGNNNNNNNCGW 1 cut(s) 90
PflFI GACNNNGTC 1 cut(s) 89
PkrI GCNGC 1 cut(s) 216
Ppu21I YACGTR 1 cut(s) 198
PspPI GGNCC 1 cut(s) 237
PsyI GACNNNGTC 1 cut(s) 89
RseI CAYNNNNRTG 2 cut(s) 196, 264
SaqAI TTAA 1 cut(s) 233
SatI GCNGC 1 cut(s) 215
Sau96I GGNCC 1 cut(s) 237
SduI GDGCHC 1 cut(s) 167
SetI ASST 6 cut(s) 149, 154, 158, 196, 200, 281
SfcI CTRYAG 1 cut(s) 157
SmiMI CAYNNNNRTG 2 cut(s) 196, 264
Sse9I AATT 2 cut(s) 51, 209
SsiI CCGC 4 cut(s) 13, 215, 246, 251
StyI CCWWGG 1 cut(s) 108
TaiI ACGT 1 cut(s) 200
TaqI TCGA 2 cut(s) 84, 93
TaqII GACCGA 1 cut(s) 115
TasI AATT 2 cut(s) 51, 209
TauI GCSGC 1 cut(s) 217
Tru1I TTAA 1 cut(s) 233
Tru9I TTAA 1 cut(s) 233
TspDTI ATGAA 2 cut(s) 17, 213
TspGWI ACGGA 2 cut(s) 160, 219
Tth111I GACNNNGTC 1 cut(s) 89
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.