Rroxscaffold_4G00302430

Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
22814905 .. 22815225
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00302430.1

Sequence Viewer

Length: 285 bp
ATGACCTTTATAGGTCTTCTTTGCCATGAGAAGTCATGCATGCGACTTTCAATCTCTCTTATCCCTCCTCTCTTTAAAGTTTCCATCTCTCCATCTTTGCCACCGGACACAACACCGGCGACTCCGAGCTCCAACTTGAGGGTAATCATCTACTACAACGAAGCCAACGCTGGAAAGTATGTTGCACGCACGGTCCTCGTGGATCCGGAGCTTAGGACCATGGATGGCGTTAGATCATGGTTAGATCGATTCTATTGTCAATGTGATGATCAAGGTAGATTCTAA

Protein Analysis

94

Amino Acids

10.63

Weight (kDa)

7.66

Isoelectric Point (pI)

48.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0031325)

Species Orthologous Gene IDs
rosa_multiflora Rmu_sc0004889.1_g000018
rosa_roxburghii Rroxscaffold_4G00302430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 205
AclWI GGATC 2 cut(s) 197, 210
AfiI CCNNNNNNNGG 1 cut(s) 138
AgsI TTSAA 1 cut(s) 51
AluBI AGCT 2 cut(s) 129, 211
AluI AGCT 2 cut(s) 129, 211
Alw21I GWGCWC 1 cut(s) 131
AlwI GGATC 2 cut(s) 197, 210
Aor13HI TCCGGA 1 cut(s) 205
AspS9I GGNCC 2 cut(s) 193, 216
AvaII GGWCC 2 cut(s) 193, 216
BamHI GGATCC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 131
BauI CACGAG 1 cut(s) 197
BbsI GAAGAC 1 cut(s) 8
Bbv12I GWGCWC 1 cut(s) 131
BccI CCATC 3 cut(s) 92, 100, 218
BcgI CGANNNNNNTGC 2 cut(s) 178, 212
BclI TGATCA 1 cut(s) 268
Bme18I GGWCC 2 cut(s) 193, 216
BmgT120I GGNCC 2 cut(s) 193, 216
BmiI GGNNCC 1 cut(s) 204
BpiI GAAGAC 1 cut(s) 8
Bpu10I CCTNAGC 1 cut(s) 212
BpuEI CTTGAG 1 cut(s) 157
Bsa29I ATCGAT 1 cut(s) 247
BsaJI CCNNGG 1 cut(s) 219
BsaWI WCCGGW 2 cut(s) 103, 205
Bsc4I CCNNNNNNNGG 1 cut(s) 138
Bse118I RCCGGY 1 cut(s) 115
BseAI TCCGGA 1 cut(s) 205
BseCI ATCGAT 1 cut(s) 247
BseDI CCNNGG 1 cut(s) 219
BseGI GGATG 1 cut(s) 229
BseLI CCNNNNNNNGG 1 cut(s) 138
BseRI GAGGAG 1 cut(s) 57
BshVI ATCGAT 1 cut(s) 247
BsiHKAI GWGCWC 1 cut(s) 131
BsiSI CCGG 3 cut(s) 104, 116, 206
BslI CCNNNNNNNGG 1 cut(s) 138
Bsp1286I GDGCHC 1 cut(s) 131
Bsp13I TCCGGA 1 cut(s) 205
Bsp143I GATC 4 cut(s) 202, 233, 244, 268
Bsp19I CCATGG 1 cut(s) 219
BspDI ATCGAT 1 cut(s) 247
BspEI TCCGGA 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 204
BspPI GGATC 2 cut(s) 197, 210
BsrFI RCCGGY 1 cut(s) 115
BssAI RCCGGY 1 cut(s) 115
BssECI CCNNGG 1 cut(s) 219
BssMI GATC 4 cut(s) 202, 233, 244, 268
BssSI CACGAG 1 cut(s) 197
BssT1I CCWWGG 1 cut(s) 219
Bst2BI CACGAG 1 cut(s) 197
Bst4CI ACNGT 1 cut(s) 193
BstC8I GCNNGC 2 cut(s) 41, 187
BstDEI CTNAG 1 cut(s) 212
BstDSI CCRYGG 1 cut(s) 219
BstF5I GGATG 1 cut(s) 229
BstKTI GATC 4 cut(s) 205, 236, 247, 271
BstMBI GATC 4 cut(s) 202, 233, 244, 268
BstNSI RCATGY 1 cut(s) 43
BstV2I GAAGAC 1 cut(s) 8
BstX2I RGATCY 1 cut(s) 202
BstYI RGATCY 1 cut(s) 202
Bsu15I ATCGAT 1 cut(s) 247
BsuTUI ATCGAT 1 cut(s) 247
BtgI CCRYGG 1 cut(s) 219
BtsCI GGATG 1 cut(s) 229
Cac8I GCNNGC 2 cut(s) 41, 187
Cfr10I RCCGGY 1 cut(s) 115
Cfr13I GGNCC 2 cut(s) 193, 216
ClaI ATCGAT 1 cut(s) 247
CviAII CATG 5 cut(s) 26, 36, 40, 220, 237
CviJI RGCY 3 cut(s) 129, 164, 211
CviKI_1 RGCY 3 cut(s) 129, 164, 211
DdeI CTNAG 1 cut(s) 212
DpnI GATC 4 cut(s) 204, 235, 246, 270
DpnII GATC 4 cut(s) 202, 233, 244, 268
DraI TTTAAA 1 cut(s) 76
Ecl136II GAGCTC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 219
Eco24I GRGCYC 1 cut(s) 131
Eco47I GGWCC 2 cut(s) 193, 216
Eco53kI GAGCTC 1 cut(s) 129
EcoICRI GAGCTC 1 cut(s) 129
EcoT14I CCWWGG 1 cut(s) 219
EcoT22I ATGCAT 1 cut(s) 41
EcoT38I GRGCYC 1 cut(s) 131
ErhI CCWWGG 1 cut(s) 219
FaeI CATG 5 cut(s) 29, 39, 43, 223, 240
FaiI YATR 7 cut(s) 11, 27, 37, 41, 180, 221, 238
FatI CATG 5 cut(s) 25, 35, 39, 219, 236
FbaI TGATCA 1 cut(s) 268
FokI GGATG 1 cut(s) 236
FriOI GRGCYC 1 cut(s) 131
HapII CCGG 3 cut(s) 104, 116, 206
Hin1II CATG 5 cut(s) 29, 39, 43, 223, 240
HinfI GANTC 3 cut(s) 121, 249, 279
HpaII CCGG 3 cut(s) 104, 116, 206
Hpy188I TCNGA 1 cut(s) 126
Hpy188III TCNNGA 1 cut(s) 206
HpyCH4III ACNGT 1 cut(s) 193
HpyCH4V TGCA 2 cut(s) 39, 185
HpyF3I CTNAG 1 cut(s) 212
Hsp92II CATG 5 cut(s) 29, 39, 43, 223, 240
Kpn2I TCCGGA 1 cut(s) 205
Ksp22I TGATCA 1 cut(s) 268
Kzo9I GATC 4 cut(s) 202, 233, 244, 268
LmnI GCTCC 2 cut(s) 134, 208
LpnPI CCDG 4 cut(s) 117, 129, 156, 219
MalI GATC 4 cut(s) 204, 235, 246, 270
MboI GATC 4 cut(s) 202, 233, 244, 268
MboII GAAGA 1 cut(s) 8
MflI RGATCY 1 cut(s) 202
MhlI GDGCHC 1 cut(s) 131
MlyI GAGTC 1 cut(s) 115
MmeI TCCRAC 1 cut(s) 156
MnlI CCTC 4 cut(s) 75, 78, 132, 206
Mph1103I ATGCAT 1 cut(s) 41
MroI TCCGGA 1 cut(s) 205
MseI TTAA 1 cut(s) 75
MspI CCGG 3 cut(s) 104, 116, 206
NcoI CCATGG 1 cut(s) 219
NdeII GATC 4 cut(s) 202, 233, 244, 268
NlaIII CATG 5 cut(s) 29, 39, 43, 223, 240
NlaIV GGNNCC 1 cut(s) 204
NsiI ATGCAT 1 cut(s) 41
NspI RCATGY 1 cut(s) 43
PaeI GCATGC 1 cut(s) 43
PfeI GAWTC 2 cut(s) 249, 279
PleI GAGTC 1 cut(s) 115
PpsI GAGTC 1 cut(s) 115
Psp124BI GAGCTC 1 cut(s) 131
PspN4I GGNNCC 1 cut(s) 204
PspPI GGNCC 2 cut(s) 193, 216
PsuI RGATCY 1 cut(s) 202
SacI GAGCTC 1 cut(s) 131
SaqAI TTAA 1 cut(s) 75
Sau3AI GATC 4 cut(s) 202, 233, 244, 268
Sau96I GGNCC 2 cut(s) 193, 216
SchI GAGTC 1 cut(s) 115
SduI GDGCHC 1 cut(s) 131
SetI ASST 5 cut(s) 8, 16, 131, 213, 277
SgrAI CRCCGGYG 1 cut(s) 115
SinI GGWCC 2 cut(s) 193, 216
SmlI CTYRAG 1 cut(s) 136
SmoI CTYRAG 1 cut(s) 136
SphI GCATGC 1 cut(s) 43
SstI GAGCTC 1 cut(s) 131
StyI CCWWGG 1 cut(s) 219
TaaI ACNGT 1 cut(s) 193
TaqI TCGA 1 cut(s) 247
TfiI GAWTC 2 cut(s) 249, 279
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
VpaK11BI GGWCC 2 cut(s) 193, 216
XceI RCATGY 1 cut(s) 43
Zsp2I ATGCAT 1 cut(s) 41
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.