Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0025830

Physical Location & Seq

Genomic Coordinates Reverse (-)

29532765 .. 29533379

Gene Structure 615 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00308020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAGGGCCGGCAGCAACAACCACGAGCGGGGTTTCAGAAAGTGGAAGGTGCTCATCATGGCCGCTGTCATCCTTGCTGCTGCCATCAGTGCCGCTCATCATTTTGAGGACCCTGATCTCGACACAAATCTATCTAAAGCTATCACTAATCCAGAAGAAGAACAGGATGAAGATCAAACACTTGGAGCAGCAGCCAGTACTGATGGCAGTAACAACGGCGCACAGGGACTCAGAATGCGGAAGATGCTCATCATTGCCGCTGTCGTCTTTATTCTCTCTTTATCTGTTCACTGGCTCTTCTCTTTCTCAGGTAGAGAGAGATCCATGTCGTCCATTTTGGTACCTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

116

Amino Acids

12.65

Weight (kDa)

6.04

Isoelectric Point (pI)

33.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0025830)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_4G00308020
rosa_samantha	Rh1AG202200 Rh1CG187100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	340
AccB1I	GGYRCC	1 cut(s)	340
AccBSI	CCGCTC	2 cut(s)	28, 95
AciI	CCGC	5 cut(s)	28, 63, 93, 238, 258
AclWI	GGATC	1 cut(s)	315
AcoI	YGGCCR	1 cut(s)	60
AfaI	GTAC	2 cut(s)	199, 342
AfiI	CCNNNNNNNGG	1 cut(s)	28
AluBI	AGCT	1 cut(s)	140
AluI	AGCT	1 cut(s)	140
Alw21I	GWGCWC	1 cut(s)	54
AlwI	GGATC	1 cut(s)	315
AoxI	GGCC	2 cut(s)	6, 60
ApeKI	GCWGC	5 cut(s)	12, 77, 80, 188, 191
Asp718I	GGTACC	1 cut(s)	340
AspLEI	GCGC	1 cut(s)	221
AspS9I	GGNCC	2 cut(s)	6, 109
AvaII	GGWCC	1 cut(s)	109
BanI	GGYRCC	1 cut(s)	340
BauI	CACGAG	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	54
BbvI	GCAGC	5 cut(s)	24, 64, 67, 200, 203
BccI	CCATC	2 cut(s)	92, 197
BceAI	ACGGC	1 cut(s)	232
BisI	GCNGC	8 cut(s)	13, 63, 78, 81, 93, 189, 192, 258
BlsI	GCNGC	8 cut(s)	14, 64, 79, 82, 94, 190, 193, 259
BmcAI	AGTACT	1 cut(s)	199
Bme18I	GGWCC	1 cut(s)	109
BmgT120I	GGNCC	2 cut(s)	6, 109
BmiI	GGNNCC	2 cut(s)	111, 342
BmsI	GCATC	1 cut(s)	234
BsaBI	GATNNNNATC	2 cut(s)	171, 248
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse118I	RCCGGY	1 cut(s)	8
Bse1I	ACTGG	2 cut(s)	195, 296
Bse3DI	GCAATG	1 cut(s)	252
Bse8I	GATNNNNATC	2 cut(s)	171, 248
BseGI	GGATG	2 cut(s)	69, 172
BseJI	GATNNNNATC	2 cut(s)	171, 248
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	2 cut(s)	244, 321
BseNI	ACTGG	2 cut(s)	195, 296
BseXI	GCAGC	5 cut(s)	24, 64, 67, 200, 203
BshFI	GGCC	2 cut(s)	8, 62
BshNI	GGYRCC	1 cut(s)	340
BsiHKAI	GWGCWC	1 cut(s)	54
BsiSI	CCGG	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	240
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmFI	GGGAC	1 cut(s)	240
BsmI	GAATGC	1 cut(s)	240
BsnI	GGCC	2 cut(s)	8, 62
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	3 cut(s)	115, 172, 320
BspACI	CCGC	5 cut(s)	28, 63, 93, 238, 258
BspANI	GGCC	2 cut(s)	8, 62
BspCNI	CTCAG	2 cut(s)	243, 320
BspLI	GGNNCC	2 cut(s)	111, 342
BspPI	GGATC	1 cut(s)	315
BspQI	GCTCTTC	1 cut(s)	302
BspT107I	GGYRCC	1 cut(s)	340
BsrBI	CCGCTC	2 cut(s)	28, 95
BsrDI	GCAATG	1 cut(s)	252
BsrFI	RCCGGY	1 cut(s)	8
BsrI	ACTGG	2 cut(s)	195, 296
BssAI	RCCGGY	1 cut(s)	8
BssMI	GATC	3 cut(s)	115, 172, 320
BssSI	CACGAG	1 cut(s)	23
Bst2BI	CACGAG	1 cut(s)	23
Bst6I	CTCTTC	1 cut(s)	302
BstC8I	GCNNGC	1 cut(s)	10
BstDEI	CTNAG	2 cut(s)	230, 307
BstF5I	GGATG	2 cut(s)	69, 172
BstHHI	GCGC	1 cut(s)	221
BstKTI	GATC	3 cut(s)	118, 175, 323
BstMBI	GATC	3 cut(s)	115, 172, 320
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 244
BstV1I	GCAGC	5 cut(s)	24, 64, 67, 200, 203
BstX2I	RGATCY	1 cut(s)	320
BstYI	RGATCY	1 cut(s)	320
BsuRI	GGCC	2 cut(s)	8, 62
BtsCI	GGATG	2 cut(s)	69, 172
BtsIMutI	CAGTG	2 cut(s)	94, 289
Cac8I	GCNNGC	1 cut(s)	10
CfoI	GCGC	1 cut(s)	221
Cfr10I	RCCGGY	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	6, 109
Csp6I	GTAC	2 cut(s)	198, 341
CviAII	CATG	3 cut(s)	58, 325, 348
CviJI	RGCY	5 cut(s)	8, 62, 140, 194, 295
CviKI_1	RGCY	5 cut(s)	8, 62, 140, 194, 295
CviQI	GTAC	2 cut(s)	198, 341
DdeI	CTNAG	2 cut(s)	230, 307
DpnI	GATC	3 cut(s)	117, 174, 322
DpnII	GATC	3 cut(s)	115, 172, 320
EaeI	YGGCCR	1 cut(s)	60
Eam1104I	CTCTTC	1 cut(s)	302
EarI	CTCTTC	1 cut(s)	302
Eco47I	GGWCC	1 cut(s)	109
EcoO109I	RGGNCCY	1 cut(s)	109
FaeI	CATG	3 cut(s)	61, 328, 351
FaiI	YATR	3 cut(s)	59, 326, 349
FaqI	GGGAC	1 cut(s)	240
FatI	CATG	3 cut(s)	57, 324, 347
FauI	CCCGC	1 cut(s)	21
Fnu4HI	GCNGC	8 cut(s)	13, 63, 78, 81, 93, 189, 192, 258
FokI	GGATG	2 cut(s)	56, 179
Fsp4HI	GCNGC	8 cut(s)	13, 63, 78, 81, 93, 189, 192, 258
GlaI	GCGC	1 cut(s)	220
GluI	GCNGC	8 cut(s)	13, 63, 78, 81, 93, 189, 192, 258
HaeIII	GGCC	2 cut(s)	8, 62
HapII	CCGG	1 cut(s)	9
HhaI	GCGC	1 cut(s)	221
Hin1II	CATG	3 cut(s)	61, 328, 351
Hin6I	GCGC	1 cut(s)	219
HinP1I	GCGC	1 cut(s)	219
HinfI	GANTC	1 cut(s)	228
HpaII	CCGG	1 cut(s)	9
Hpy166II	GTNNAC	1 cut(s)	289
Hpy188I	TCNGA	2 cut(s)	38, 233
Hpy188III	TCNNGA	2 cut(s)	119, 152
Hpy8I	GTNNAC	1 cut(s)	289
HpyAV	CCTTC	1 cut(s)	40
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 244
HpyF3I	CTNAG	2 cut(s)	230, 307
Hsp92II	CATG	3 cut(s)	61, 328, 351
HspAI	GCGC	1 cut(s)	219
KpnI	GGTACC	1 cut(s)	344
KroI	GCCGGC	1 cut(s)	8
KroNI	GCCGGC	1 cut(s)	10
Kzo9I	GATC	3 cut(s)	115, 172, 320
LguI	GCTCTTC	1 cut(s)	302
LmnI	GCTCC	1 cut(s)	185
LpnPI	CCDG	8 cut(s)	22, 126, 149, 165, 208, 209, 277, 294
Lsp1109I	GCAGC	5 cut(s)	24, 64, 67, 200, 203
LweI	GCATC	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	209
MalI	GATC	3 cut(s)	117, 174, 322
MbiI	CCGCTC	2 cut(s)	28, 95
MboI	GATC	3 cut(s)	115, 172, 320
MboII	GAAGA	5 cut(s)	167, 170, 182, 253, 289
MflI	RGATCY	1 cut(s)	320
MhlI	GDGCHC	1 cut(s)	54
MlyI	GAGTC	1 cut(s)	222
MnlI	CCTC	1 cut(s)	100
MroNI	GCCGGC	1 cut(s)	8
MspA1I	CMGCKG	2 cut(s)	65, 260
MspI	CCGG	1 cut(s)	9
Mva1269I	GAATGC	1 cut(s)	240
MwoI	GCNNNNNNNGC	2 cut(s)	89, 244
NaeI	GCCGGC	1 cut(s)	10
NdeII	GATC	3 cut(s)	115, 172, 320
NgoMIV	GCCGGC	1 cut(s)	8
NlaIII	CATG	3 cut(s)	61, 328, 351
NlaIV	GGNNCC	2 cut(s)	111, 342
PciSI	GCTCTTC	1 cut(s)	302
PctI	GAATGC	1 cut(s)	240
PdiI	GCCGGC	1 cut(s)	10
PkrI	GCNGC	8 cut(s)	14, 64, 79, 82, 94, 190, 193, 259
PleI	GAGTC	1 cut(s)	222
PpsI	GAGTC	1 cut(s)	222
PpuMI	RGGWCCY	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	109
PspN4I	GGNNCC	2 cut(s)	111, 342
PspPI	GGNCC	2 cut(s)	6, 109
PspPPI	RGGWCCY	1 cut(s)	109
PsuI	RGATCY	1 cut(s)	320
RsaI	GTAC	2 cut(s)	199, 342
RsaNI	GTAC	2 cut(s)	198, 341
SapI	GCTCTTC	1 cut(s)	302
SatI	GCNGC	8 cut(s)	13, 63, 78, 81, 93, 189, 192, 258
Sau3AI	GATC	3 cut(s)	115, 172, 320
Sau96I	GGNCC	2 cut(s)	6, 109
ScaI	AGTACT	1 cut(s)	199
SchI	GAGTC	1 cut(s)	222
SduI	GDGCHC	1 cut(s)	54
SetI	ASST	4 cut(s)	51, 142, 313, 346
SfaNI	GCATC	1 cut(s)	234
SinI	GGWCC	1 cut(s)	109
SsiI	CCGC	5 cut(s)	28, 63, 93, 238, 258
TaqI	TCGA	1 cut(s)	120
TatI	WGTACW	1 cut(s)	197
TauI	GCSGC	3 cut(s)	65, 95, 260
TscAI	CASTG	2 cut(s)	94, 296
TseI	GCWGC	5 cut(s)	12, 77, 80, 188, 191
TspDTI	ATGAA	1 cut(s)	183
TspRI	CASTG	2 cut(s)	94, 296
VpaK11BI	GGWCC	1 cut(s)	109
ZrmI	AGTACT	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.